Karst and groundwater in northeastern Coahuila: An Edwards Aquifer mirror

The northeastern corner of the Mexican state of Coahuila contains some of the most extensive limestone outcrops in the country, yet the karst and groundwater have seen relatively little investigation. The western (recharge) portion of the area contains ridge tops of Lower Cretaceous rocks over 1500 m in elevation, which slope down to the east and south to plunge underneath less karstic Upper Cretaceous outcrops. This represents a confined aquifer zone where wells can flow under artesian pressure. In this respect it resembles the Edwards Aquifer across the Rio Grande in Texas, with similar carbonate lithologies and karst components. Over 60 caves have been explored in the area, most since the year 2000. Upland portions of the recharge zone contain vertical caves that likely contribute to aquifer recharge, although numerous seep-spring caves in canyon walls disgorge some water prematurely. The canyons themselves are major rechargers, exemplified by El Abra, a horizontal stream cave that is the longest in Coahuila at 1841 m in length. In the lower part of the recharge zone close to the artesian zone, there are a number of caves which are estavelles. These have large funnel-shaped sinkhole entrances that slope down to pits, dropping up to 90 m to flowing streams. These normally take water, but during times of heavy rains in the recharge zone they can become springs.Integrative Biolog

The Mexican Blindcat Project: new discoveries and future efforts

content from an oral presentation March, 2017 at the 5th Astyanax International Meeting (http://www.stowers.org/sites/all/themes/aimfc/aim2017_prog.pdf)The endangered Mexican blindcat (Prietella phreatophila, Carranza 1954) is one of only four stygobitic ictalurid catfish in North America. Members of two monotypic genera (Satan eurystomus and Trogloglanis pattersoni) are known from the Edwards Aquifer in Texas and, until recently, Prietella (represented by P. lundbergi and P. phreatophila) was only known to occur in Mexico (northern Coahuila to southern Tamaulipas). The recent discovery of P. phreatophila in a cave on the Amistad National Recreation Area in Val Verde County, Texas is the result of decades of sporadic effort on both sides of the US/Mexican border and has stimulated a renewed effort to investigate the distribution, ecology, evolutionary history, and conservation status of this species. Collaborative efforts among The San Antonio Zoo, The University of Texas at Austin, Zara Environmental and The National Park Service are currently focused on habitat surveys in Texas as well as captive husbandry and propagation. Future efforts will include collaborators from the Comisión Nacional de Áreas Naturales Protegidas, Área de Protección de Recursos Naturales Sabinas, and the Laboratorio de Genética para la Conservación, Centro de Investigaciones Biológicas del Noroeste, La Paz to conduct expanded fieldwork in Mexico, hydrogeologic studies, and surveys using environmental DNA.San Antonio Zoo; University of Texas at Austin, Biodiversity Center, College of Natural Sciences; U.S. National Park ServiceIntegrative Biolog

Status of the Stony Brook Superconducting Heavy-Ion Linac

The present status of the Stony Brook Superconducting Heavy-Ion Linear Accelerator is described, with emphasis on recent operational results with a prototype unit of the accelerator. The basic LINAC elements are independently-phased lead-plated copper split-loop resonators operating at 151.7 MHz and optimized for velocities of either ß=v/c= 0.055 or ß=0.10. Resonators are grouped in units of either 4 low-ß or 3 high-ß resonators in compact cryostat modules separated by room-temperature quadrupole-doublet lenses. The LINAC consisting of 4 low-ß and 7 high-ß modules injected with heavy ions of mass A≃16-100 from the Stony Brook EN tandem will produce an additional energy gain of ~18 MeV per unit charge with a total heat dissipation at 4.5K of <300 Watts. In recent tests with low-ß prototype units, individual resonators were operated continuously at accelerating gradients in excess of 3.5 MV/m, and were phase and amplitude stabilized at 3.0 MV/ m using 175 Watts of RF power. Helium-temperature dissipation at 3.0 MV/m is ~8 Watts after helium-gas conditioning. The prototype low-ß module was used to accelerate a 30 Mev ^(16)O^(5+) beam to ~35 MeV

Snf2 family ATPases and DExx box helicases:differences and unifying concepts from high-resolution crystal structures

Proteins with sequence similarity to the yeast Snf2 protein form a large family of ATPases that act to alter the structure of a diverse range of DNA–protein structures including chromatin. Snf2 family enzymes are related in sequence to DExx box helicases, yet they do not possess helicase activity. Recent biochemical and structural studies suggest that the mechanism by which these enzymes act involves ATP-dependent translocation on DNA. Crystal structures suggest that these enzymes travel along the minor groove, a process that can generate the torque or energy in remodelling processes. We review the recent structural and biochemical findings which suggest a common mechanistic basis underlies the action of many of both Snf2 family and DExx box helicases

Discovery of Endangered Mexican Blindcat, Prietella phreatophila, in Texas: Implications for International Groundwater Management and Evolution of the Regional Karst Aquifer Biota

Paper presented July 15, 2017 at the annual Joint Meeting of Ichthyologists and Herpetologists in Austin, Texas, USA (http://conferences.k-state.edu/JMIH-Austin-2017/). The oral presentation of this content mentioned questions about the taxonomy and phylogenetic position of Prietella lundbergi and the only specimens attributed to P. lundbergi apart from the holotype. Since the presentation, we obtained high resolution CT scans of both the holotype and a specimen (TNHC 25767) from Cueva del Nacimiento del Río Frio, not far north of the type locality. The anatomy revealed in those CT scans suggests that these specimens represent a single species, and that P. lundbergi is only remotely related to Prietella phreatophila, which would be consistent with results of Wilcox, T.P., F.J. Garcı́a de León, Dean A. Hendrickson, and D.M. Hillis. 2004. “Convergence among Cave Catfishes: Long-Branch Attraction and a Bayesian Relative Rates Test.” Molecular Phylogenetics and Evolution 31 (3): 1101–13. doi:10.1016/j.ympev.2003.11.006). Thus, further research is in progress by Hendrickson, Lundberg, Luckenbill and Arce that may result in taxonomic revision removing P. lundbergi from Prietella.Mexican blindcat, Prietella phreatophila, described in 1954 from a cave system near the town of Múzquiz in central Coahuila state, and considered a Mexican endemic, was listed by the U.S. Fish and Wildlife Service as a foreign endangered species (protected "wherever found") in 1970. Explorations in the 1990s discovered many new localities extending nearly to the international border, and in 2016 the species was discovered in Amistad National Recreation Area (ANRA) in Texas, just north of the international border near Del Rio. Not only does the discovery support the aquifer of this fish being an internationally shared resource, but the stygobitic invertebrate biota found with the fish indicates a potentially large extent of the aquifer, and thus possibly the fish, in Texas. Invertebrate faunal connections (historic or current) extend from the Amistad Lake area of the new occurrence west into the Trans-Pecos region and east into the Edwards Aquifer of central Texas. We explore implications of this for both water management and evolutionary history of this and other blind ictalurids, and suggest that population genetic studies of both stygobitic fishes and invertebrates could help hydrogeologists better define often difficult to map aquifer extents and interconnections. While NPS is continuing to support the cave explorations of ANRA that produced the Texas discovery, we propose a broader bi-national sampling effort for both the fish and invertebrates extending well beyond the current known distribution of P. phreatophila. We also pointed out questions about phylogenetic relatedness of P. phreatophila and P. lundbergi further south, as well as the possibility of a monophyletic clade of blindcats, including those of the Edwards Aquifer, Satan and Trogloglanis. If substantiated, that evolutionary history would imply broader historic inter-aquifer connections ranging from the San Antonio area as far south as southernmost Tamaulipas. Finally, we report establishment of a small captive population of Prietella phreatophila at San Antonio Zoo for research and possibly eventual conservation applications.U.S. National Park Service; San Antonio Zoo; University of Texas at Austin College of Natural Sciences and Department of Integrative BiologyIntegrative Biolog

Discovery of the Mexican Blindcat, Prietella phreatophila, in the U.S., and an update on its rangewide conservation status

presented at the 2017 meeting of the Texas Academy of Science at Mary Hardin Baylor University, Belton, TexasMexican blindcat, Prietella phreatophila, was described in 1954 from a single locality in Northern Coahuila, México. Long listed as endangered by the Mexican federal government, it was listed by the U.S. Fish and Wildlife Service as a foreign endangered species in 1970, and the most recent (1996) update of its assessment for the IUCN Red List considers it endangered as well. Explorations in the late 1990s discovered many new localities extending nearly to the international border, and a captive population established provided insights into the species’ basic biology and behavior. In 2016 the species was discovered in a cave in the Amistad National Recreation Area (ANRA), just north of the Río Grande in Texas. The 1970 listing instantly gave the TX population full protection under the U.S. Endangered Species Act. The species’ subterranean and mostly inaccessible habitat endows it with extremely low detectability and its actual range is likely broader than physical sampling of specimens has revealed. We review all prior and new knowledge of the species and its habitat to provide an updated international reassessment of its overall conservation status and threats, which most notably include aquifer depletion and contamination in both the Mexican and U.S. portions of its known range. A live captive population of two specimens collected in 1997 in Coahuila and one Texas specimen is now at the San Antonio Zoo, we are working with NPS to further explore ANRA caves and hope eventually to return to Coahuila to more fully update the species’ conservation status.Integrative Biolog

Conformational changes of a Swi2/Snf2 ATPase during its mechano-chemical cycle

Remodelling protein nucleic acid interfaces is an important biological task, which is often carried out by nucleic acid stimulated ATPases of the Swi2/Snf2 superfamily. Here we study the mechano-chemical cycle of such an ATPase, namely the catalytic domain of the Sulfolobus solfataricus Rad54 homologue (SsoRad54cd), by means of fluorescence resonance energy transfer (FRET). The results of the FRET studies show that the enzyme can be found in (at least) two different possible conformations in solution. An open conformation, consistent with a recently reported crystal structure, is converted into a closed conformation after DNA binding. Upon subsequent binding of ATP no further change in conformation can be detected by the FRET measurements. Instead, a FRET detectable conformational change occurs after ATP hydrolysis and prior to ADP release, suggesting a powerstroke that is linked to phosphate release. Based on these data we will present a new model for the mechano-chemical cycle of this enzyme. This scheme in turn provides a working model for understanding the function of other members of the Swi2/Snf2 family

Tropical Subterranean Ecosystems in Mexico, Guatemala and Belize: A Review of Aquatic Biodiversity and Their Ecological Aspects

The subterranean ecosystems in tropical areas of Mexico, North of Guatemala & Belize are very abundant because the karstic soil that allow these formations are the main composition in the Yucatán Peninsula and several mountains systems in these countries; also, they have a strong relationship with tropical forest adjacent where the main energy into the caves have an alloctonous origin. In these three countries there are three different cave conditions: a) freshwater semi-dry caves, b) flooded freshwater systems and c) anchialine systems. Mainly crustaceans and freshwater fishes are the major representative group in the aquatic diversity in these systems because the anchialine members are restricted to Yucatán Peninsula and Islands adjacent. Around 5000 entries to subterranean world there are among these countries, where the Yucatan Peninsula is the area with major caves or cenotes in comparison with southern of Mexico, North of Guatemala and Belize. Into these systems are possible found crustaceans and fishes from different families. The objective of this paper is present a review of these systems according with each karstic areas and show the current map including the location of each systems; as well their subterranean aquatic biodiversity and, finally discuss the relationships among these different areas using their biological aquatic richness in consideration with ecological subterranean conditions

Catching Element Formation In The Act

Gamma-ray astronomy explores the most energetic photons in nature to address some of the most pressing puzzles in contemporary astrophysics. It encompasses a wide range of objects and phenomena: stars, supernovae, novae, neutron stars, stellar-mass black holes, nucleosynthesis, the interstellar medium, cosmic rays and relativistic-particle acceleration, and the evolution of galaxies. MeV gamma-rays provide a unique probe of nuclear processes in astronomy, directly measuring radioactive decay, nuclear de-excitation, and positron annihilation. The substantial information carried by gamma-ray photons allows us to see deeper into these objects, the bulk of the power is often emitted at gamma-ray energies, and radioactivity provides a natural physical clock that adds unique information. New science will be driven by time-domain population studies at gamma-ray energies. This science is enabled by next-generation gamma-ray instruments with one to two orders of magnitude better sensitivity, larger sky coverage, and faster cadence than all previous gamma-ray instruments. This transformative capability permits: (a) the accurate identification of the gamma-ray emitting objects and correlations with observations taken at other wavelengths and with other messengers; (b) construction of new gamma-ray maps of the Milky Way and other nearby galaxies where extended regions are distinguished from point sources; and (c) considerable serendipitous science of scarce events -- nearby neutron star mergers, for example. Advances in technology push the performance of new gamma-ray instruments to address a wide set of astrophysical questions.Comment: 14 pages including 3 figure