The effect of vegetation height and biomass on the sediment budget of a European saltmarsh

Sediment retention in saltmarshes is often attributed to the presence of vegetation, which enhances accretion by slowing water flow, reduces erosion by attenuating wave energy and increases surface stability through the presence of organic matter. Saltmarsh vegetation morphology varies considerably on a range of spatial and temporal scales, but the effect of different above ground morphologies on sediment retention is not well characterised. Understanding the biophysical interaction between the canopy and sediment trapping in situ is important for improving numerical shoreline models. In a novel field flume study, we measured the effect of vegetation height and biomass on sediment trapping using a mass balance approach. Suspended sediment profilers were placed at both openings of a field flume built across-shore on the seaward boundary of an intertidal saltmarsh in the Dengie Peninsula, UK. Sequential removal of plant material from within the flume resulted in incremental loss of vegetation height and biomass. The difference between the concentration of suspended sediment measured at each profiler was used to determine the sediment budget within the flume. Deposition of material on the plant/soil surfaces within the flume occurred during flood tides, while ebb flow resulted in erosion (to a lesser degree) from the flume area, with a positive sediment budget of on average 6.5 g m-2 tide-1 with no significant relationship between sediment trapping efficiency and canopy morphology. Deposition (and erosion) rates were positively correlated to maximum inundation depth. Our results suggest that during periods of calm conditions, changes to canopy morphology do not result in significant changes in sediment budgets in marshes

Storm impacts and shoreline recovery: Mechanisms and controls in the southern North Sea

Storm impacts play a significant role in shoreline dynamics on barrier coastlines. Furthermore, inter-storm recovery is a key parameter determining long-term coastal resilience to climate change, storminess variability and sea level rise. Over the last decade, four extreme storms, with strong energetic waves and high still water levels resulting from high spring tides and large skew surge residuals, have impacted the shoreline of the southern North Sea. The 5th December 2013 storm, with the highest run-up levels recorded in the last 60 years, resulted in large sections of the frontline of the North Norfolk coast being translated inland by over 10 m. Storms in March and November 2007 also generated barrier scarping and shoreline retreat, although not on the scale of 2013. Between 2008 and 2013, a calm period, recovery dominated barrier position and elevation but was spatially differentiated alongshore. For one study area, Scolt Head Island, no recovery was seen; this section of the coast is being reset episodically landwards during storms. By contrast, the study area at Holkham Bay showed considerable recovery between 2008 and 2013, with barrier sections developing seaward through foredune recovery. The third study area, Brancaster Bay, showed partial recovery in barrier location and elevation. Results suggest that recovery is promoted by high sediment supply and onshore intertidal bar migration, at rates of 40 m a$^{−1}$. These processes bring sand to elevations where substrate drying enables aeolian processes to entrain and transport sand from upper foreshores to foredunes. We identify three potential sediment transport pathways that create a region of positive diffusivity at Holkham Bay. During calm periods, a general westward movement of sediment from the drift divide at Sheringham sources the intertidal bar and foredune development at Holkham Bay. However, during and following storms the drift switches to eastward, not only on the beach itself but also below the – 7 m isobath. Sediment from the eroding barrier at Brancaster Bay, and especially Scolt Head Island, also sources the sediment sink of Holkham Bay. Knowledge of foredune growth and barrier recovery in natural systems are vital aspects of future coastal management planning with accelerated sea-level rise and storminess variability.This research was undertaken while SMB held a Research Fellowship awarded by The Leverhulme Trust. Information on alongshore variations in water level was collected under EU FP7 Collaborative Project (grant agreement no: 603458) ‘Resilience-increasing Strategies for Coasts – toolkit’ (http://www.risckit.eu). The research is also a contribution to UK NERC BLUECoast Project (NE/N015924/1)

Impact of management regime and regime change on gravel barrier response to a major storm surge

Gravel barriers represent physiographic, hydrographic, sedimentary, and ecological boundaries between inshore and open marine offshore environments, where they provide numerous important functions. The morphosedimentary features of gravel barriers (e.g., steep, energy reflective form) have led to their characterization as effective coastal defense features during extreme hydrodynamic conditions. Consequently, gravel barriers have often been intensively managed to enhance coastal defense functions. The Blakeney Point Barrier System (BPBS), U.K., is one such example, which offers the opportunity to investigate the impact of alternative management regimes under extreme hydrodynamic conditions. The BPBS was actively re-profiled along its eastern section from the 1950s to the winter of 2005, whilst undergoing no active intervention along its western section. Combining an analysis of remotely sensed elevation datasets with numerical storm surge modeling, this paper finds that interventionist management introduces systemic differences in barrier morphological characteristics. Overly steepened barrier sections experience greater wave run-up extents during storm surge conditions, leading to more extreme morphological changes and landward barrier retreat. Furthermore, while high, steep barriers can be highly effective at preventing landward flooding, in cases where overwashing does occur, the resultant landward overtopping volume is typically higher than would be the case for a relatively lower crested barrier with a lower angled seaward slope. There is a growing preference within coastal risk management for less interventionist management regimes, incorporating natural processes. However, restoring natural processes does not immediately or inevitably result in a reduction in coastal risk. This paper contributes practical insights regarding the time taken for a previously managed barrier to relax to a more natural state, intermediary morphological states, and associated landward water flows during extreme events, all of which should be considered if gravel barriers are to be usefully integrated into broader risk management strategies.</jats:p

Understanding spatio-temporal barrier dynamics through the use of multiple shoreline proxies

At the coast, risk arises where, and when, static human developments are situated within dynamic surroundings. Barrier islands are often sites of heightened coastal risk since they frequently support substantial human populations and undergo extensive morphological change owing to their low-lying form and persistence in energetic hydrodynamic and meteorological conditions. Using the mixed sand-gravel barrier of Blakeney Point, this study argues that to avoid an only partial understanding of coastal zone processes, it is necessary to make use of multiple shoreline proxies, capturing processes operating both at different timescales and different cross-shore positions. Here, five shoreline proxies were extracted from three data sources. Shoreline error was quantified and compared to observed shoreline change rates to establish proxy-specific, appropriate timescales for shoreline change analysis. The map derived Mean High Water Line at Blakeney Point revealed landward retreat of −0.61 m a−1 over the past 130 years with a shift from drift- towards swash-alignment of the barrier since 1981. Over the past 24 years, the High Water Line, Ridge Line and Vegetation Line reveal proxy-specific response to management regime change. The termination of barrier reprofiling of the eastern section of the barrier has resulted in increased sediment release to the downdrift barrier terminus, buffering retreat there at the expense of the updrift section. The Vegetation Line represents an effective proxy for storm-driven overwash with maximum shoreline retreat during surge events of 172 m, illustrating a strong event-driven component to barrier morphodynamics. By comparison to the other proxies, the LiDAR (Light Detection and Ranging) derived Mean High Water Line offers relatively limited insights into barrier dynamics, emphasising the importance of multi-proxy approaches. In the face of technological advance, we demonstrate the continued importance of critical attention towards the dependencies that exist between shoreline proxy selection and the processes that can be observed as a result.This work was funded by the NERC/ESRC Data, Risk and Environmental Analytical Methods (DREAM) CDT, Grant/Award Number: NE/M009009/1. It is also a contribution to the NERC-funded project “Physical and Biological dynamic coastal processes and their role in coastal recovery” (BLUE-coast), Grant Award Number: NE/N015924/1

A Bayesian network approach for coastal risk analysis and decision making

Emergency management and long-term planning in coastal areas depend on detailed assessments (meter scale) of flood and erosion risks. Typically, models of the risk chain are fragmented into smaller parts, because the physical processes involved are very complex and consequences can be diverse. We developed a Bayesian network (BN) approach to integrate the separate models. An important contribution is the learning algorithm for the BN. As input data, we used hindcast and synthetic extreme event scenarios, information on land use and vulnerability relationships (e.g., depth-damage curves). As part of the RISC-KIT (Resilience-Increasing Strategies for Coasts toolKIT) project, we successfully tested the approach and algorithm in a range of morphological settings. We also showed that it is possible to include hazards from different origins, such as marine and riverine sources. In this article, we describe the application to the town of Wells-next-the-Sea, Norfolk, UK, which is vulnerable to storm surges. For any storm input scenario, the BN estimated the percentage of affected receptors in different zones of the site by predicting their hazards and damages. As receptor types, we considered people, residential and commercial properties, and a saltmarsh ecosystem. Additionally, the BN displays the outcome of different disaster risk reduction (DRR) measures. Because the model integrates the entire risk chain with DRR measures and predicts in real-time, it is useful for decision support in risk management of coastal areas.European Community's 7th Framework Programme through the grant to RISC-KIT (Resilience-increasing Strategies for Coasts - Toolkit"), contract no. 603458

Regional coastal flood risk assessment for a tidally dominant, natural coastal setting: North Norfolk, southern North Sea

A Coastal Risk Assessment Framework (CRAF) provides two levels of coastal risk and vulnerability assessment, by combining information on the spatially variable hazard and exposure. In Phase 1, areas of greatest risk or `hotspots' are identified. In Phase 2, these hotspots are then analysed in greater detail to identify both direct and indirect extreme event impacts. This approach was applied to the barrier coastline of North Norfolk, eastern England. The CRAF identified high risk coastal hotspots on the basis of both hazard impacts (swash regime (tide + surge + wave runup) and overwash/terrestrial inundation regimes) from a 1 in 115 year return period storm and a range of land use, infrastructure, economic and social vulnerability indicators. Hazard extents and hazard severity, in some locations modified by the presence of intertidal saltmarsh, were calculated for 45, 1-2 km wide sections along the topographically complex coast. When combined with five exposure indicators, eight hotspots were identified along the 45 km long frontage. In a 2nd phase, two of these hotspots, one a chain of small villages (Brancaster/Brancaster Staithe/Burnham Deepdale) and one a small town (Wells-next-the-Sea), were compared in more detail using a suite of coastal inundation and impact assessment models to determine both direct and indirect impacts. Hazards at this higher resolution were calculated using the 1D process-based XBeach model and the 2D LISFLOOD inundation model. Vulnerability to the hazards was calculated using the INDRA (Integrated Disruption Assessment) model with comparison of the two hotspots through the use of a Multi Criteria Analysis (MCA). The selection of hazard hotspots and comparison of hotspots using these techniques allows areas at greatest risk to be identified, of vital importance for coastal management and resource allocation.This work was supported by the European Community’s 7th Framework Programme through the grant to RISC-KIT (“Resilience-increasing Strategies for Coasts Toolkit”), contract no. 603458, and by contributions by the partner institutes and a grant from The Isaac Newton Trust, Trinity College, Cambridge

Reef-building corals thrive within hot-acidified and deoxygenated waters

Coral reefs are deteriorating under climate change as oceans continue to warm and acidify and thermal anomalies grow in frequency and intensity. In vitro experiments are widely used to forecast reef-building coral health into the future, but often fail to account for the complex ecological and biogeochemical interactions that govern reefs. Consequently, observations from coral communities under naturally occurring extremes have become central for improved predictions of future reef form and function. Here, we present a semi-enclosed lagoon system in New Caledonia characterised by diel fluctuations of hot-deoxygenated water coupled with tidally driven persistently low pH, relative to neighbouring reefs. Coral communities within the lagoon system exhibited high richness (number of species = 20) and cover (24-35% across lagoon sites). Calcification rates for key species (Acropora formosa, Acropora pulchra, Coelastrea aspera and Porites lutea) for populations from the lagoon were equivalent to, or reduced by ca. 30-40% compared to those from the reef. Enhanced coral respiration, alongside high particulate organic content of the lagoon sediment, suggests acclimatisation to this trio of temperature, oxygen and pH changes through heterotrophic plasticity. This semi-enclosed lagoon therefore provides a novel system to understand coral acclimatisation to complex climatic scenarios and may serve as a reservoir of coral populations already resistant to extreme environmental conditions

Endogenous antigen processing drives the primary CD4+ T cell response to influenza.

By convention, CD4+ T lymphocytes recognize foreign and self peptides derived from internalized antigens in combination with major histocompatibility complex class II molecules. Alternative pathways of epitope production have been identified, but their contributions to host defense have not been established. We show here in a mouse infection model that the CD4+ T cell response to influenza, critical for durable protection from the virus, is driven principally by unconventional processing of antigen synthesized within the infected antigen-presenting cell, not by classical processing of endocytosed virions or material from infected cells. Investigation of the cellular components involved, including the H2-M molecular chaperone, the proteasome and γ-interferon-inducible lysosomal thiol reductase revealed considerable heterogeneity in the generation of individual epitopes, an arrangement that ensures peptide diversity and broad CD4+ T cell engagement. These results could fundamentally revise strategies for rational vaccine design and may lead to key insights into the induction of autoimmune and anti-tumor responses

Cell Free Expression of hif1α and p21 in Maternal Peripheral Blood as a Marker for Preeclampsia and Fetal Growth Restriction

Preeclampsia, a severe unpredictable complication of pregnancy, occurs in 6% of pregnancies, usually in the second or third trimester. The specific etiology of preeclampsia remains unclear, although the pathophysiological hallmark of this condition appears to be an inadequate blood supply to the placenta. As a result of the impaired placental blood flow, intrauterine growth restriction (IUGR) and consequential fetal oxidative stress may occur. Consistent with this view, pregnancies complicated by preeclampsia and IUGR are characterized by up-regulation of key transcriptional regulators of the hypoxic response including, hif1α and as well as p53 and its target genes. Recently, the presence of circulating cell-free fetal RNA has been documented in maternal plasma. We speculated that pregnancies complicated by preeclampsia and IUGR, will be associated with an abnormal expression of p53 and/or hif1α related genes in the maternal plasma. Maternal plasma from 113 singleton pregnancies (72 normal and 41 complicated pregnancies) and 19 twins (9 normal and 10 complicated pregnancies) were collected and cell free RNA was extracted. The expression of 18 genes was measured by one step real-time RT-PCR and was analyzed for prevalence of positive/negative expression levels. Results indicate that, among the genes examined, cell free plasma expressions of p21 and hif1α were more prevalent in pregnancies complicated by hypoxia and/or IUGR (p<0.001). To conclude, we present in this manuscript data to support the association between two possible surrogate markers of hypoxia and common complications of pregnancy. More work is needed in order to implement these findings in clinical practice