Xylella fastidiosa comparative genomic database is an information resource to explore the annotation, genomic features, and biology of different strains

The Xylella fastidiosa comparative genomic database is a scientific resource with the aim to provide a user-friendly interface for accessing high-quality manually curated genomic annotation and comparative sequence analysis, as well as for identifying and mapping prophage-like elements, a marked feature of Xylella genomes. Here we describe a database and tools for exploring the biology of this important plant pathogen. The hallmarks of this database are the high quality genomic annotation, the functional and comparative genomic analysis and the identification and mapping of prophage-like elements. It is available from web site http://www.xylella.lncc.br

Asymptotically Improved Convergence of Optimized Perturbation Theory in the Bose-Einstein Condensation Problem

We investigate the convergence properties of optimized perturbation theory, or linear $\delta$ expansion (LDE), within the context of finite temperature phase transitions. Our results prove the reliability of these methods, recently employed in the determination of the critical temperature T_c for a system of weakly interacting homogeneous dilute Bose gas. We carry out the explicit LDE optimized calculations and also the infrared analysis of the relevant quantities involved in the determination of $T_c$ in the large-N limit, when the relevant effective static action describing the system is extended to O(N) symmetry. Then, using an efficient resummation method, we show how the LDE can exactly reproduce the known large-N result for $T_c$ already at the first non-trivial order. Next, we consider the finite N=2 case where, using similar resummation techniques, we improve the analytical results for the nonperturbative terms involved in the expression for the critical temperature allowing comparison with recent Monte Carlo estimates of them. To illustrate the method we have considered a simple geometric series showing how the procedure as a whole works consistently in a general case.Comment: 38 pages, 3 eps figures, Revtex4. Final version in press Phys. Rev.

Quantificação do carbono das substâncias húmicas em diferentes sistemas de uso do solo e épocas de avaliação.

A quantificação do carbono nas diferentes frações da matéria orgânica do solo (MOS) torna-se necessária devido ao interesse de se conhecer o potencial de captura e armazenamento do carbono nos diferentes sistemas de uso do solo. O objetivo deste trabalho foi quantificar o carbono das substâncias húmicas em diferentes sistemas de uso do solo e épocas de avaliação e correlacioná-lo com algumas propriedades químicas e físicas do solo. Os sistemas selecionados foram: preparo convencional (PC-milho/feijão), plantio direto (PD-berinjela/milho), consórcio maracujá/Desmodium sp, cultivo com figo e sistema agroflorestal. As amostras de solo foram coletadas em duas profundidades (0-5 e 5-10 cm) e épocas (17/11/2005–verão e 23/6/2006-inverno). Foi determinado o carbono orgânico total (COT) e realizado o fracionamento químico da MOS, quantificando-se o carbono da fração humina (C-HUM), fração ácido húmico (C-FAH) e fração ácido fúlvico (C-FAF). O C-HUM constituiu a maior parte do COT, havendo correlação significativa com o COT em todos os sistemas avaliados e estações. Analisando o C-FAH foi possível identificar alterações no solo relacionadas aos sistemas de uso, na profundidade de 0-5 cm e no verão, destacando-se o PD com os maiores teores. Com o C-FAF ocorreu este mesmo comportamento, mas na profundidade de 5-10 cm e no inverno, destacando-se o PC com maiores valores. Foram verificadas correlações significativas entre Valor S, Valor T e DMP em todos os sistemas, com exceção da área de PC. O PD aumenta os teores de C-FAH, nas duas profundidades e nas duas estações, quando comparado ao PC do solo

A preliminary overview of skin and skeletal diseases and traumata in small cetaceans from South American waters

We succinctly review and document new cases of diseases of the skin and the skeletal system and external traumata in cetaceans from Ecuador, Colombia, Peru, Chile, Argentina, Uruguay, Brazil, and Venezuela. The survey revealed 590 cases diagnosed with a significant pathology, injury or malformation on a total of 7635 specimens of 12 odontocete species examined or observed in 1984-2007. Tattoo skin disease (TSD), lobomycosis-like disease (LLD) and cutaneous diseases of unknown aetiology seem to be emerging in several populations. TSD was confirmed in eight species from the SE Pacific and SW Atlantic. LLD affected only inshore Tursiops truncatus but was found in four tropical countries, namely Colombia, Ecuador, Peru and Brazil. Lobomycosis was confirmed by histology in one male from the Tramandaí estuary, southern Brazil. All LLD-affected specimens were encountered in the vicinity of major ports and cities and a possible association with chemical or organic water pollution is suspected. Whitish velvety cutaneous marks associated with scars occurred in inshore T. truncatus, Sotalia guianensis and Pseudorca crassidens. Large, rounded lesions were seen in a Cephalorhynchus eutropia calf and a C. commersonii. Cutaneous wounds and scars as well as body traumata possibly related to net entanglements and boat collisions were observed in 73 delphinids and Phocoena spinipinnis. Traumatic injuries resulted in the partial or complete amputation and other disfiguring scars of appendages in 17 cases. Fractures of the skull, ribs and vertebrae thought to be caused by fisheries-related interactions or boat collisions were seen in single individuals of Delphinus capensis, Lagenorhynchus obscurus, T. truncatus, S. guianensis and Ziphius cavirostris. Prevalence of osteopathology in small cetaceans from Peru, Brazil and Venezuela ranged widely, from 5.4% to 69.1%. In four species from Peru, lytic cranial lesions were the most frequently observed disease (5.4%-42.9%), followed by hyperostosis and ankylosing spondylitis in offshore (31%, n=42) and inshore (15.4%, n=26) T. truncatus. Fractures and other bone traumata were present in 47.2% of 53 axial skeletons of S. guianensis from the northern Rio de Janeiro state (Brazil) in 1987-1998. A high prevalence (48.4%, n=31) of, apparently congenital, malformations of cervical vertebrae, observed in a 2001-2006 sample, may be explained by a hypothetical genetic bottleneck in this population. Malformations with deficient ossification would clearly increase susceptibility for fractures. This study demonstrates the utility of a continent-wide analysis to discern epizootiological trends more readily than any local study could provide. Secondly, it underscores the need for focussed research on the effects of human activities on the spread of diseases in cetaceans, particularly in near-shore populations that utilize highly degraded coastal habitats

A review of methods to measure and monitor historical carbon emissions from forest degradation

In the absence of historical field data, developing countries can rely on consistent current ground data and remote sensing assessments