The Caledonian mountains. Northern Europe, and their changing ecosystems

With the exception of solar conditions, the climate of the Caledonian Mountains, Northern Europe, is influenced more by the nearness to the Atlantic Ocean and the Gulf Stream than by altitude and latitude. The length of the photoperiod during the growing season increases with latitude, although the total solar influx decreases. Heaths composed of species with a boreal distribution are particularly characteristic at low altitudes and latitudes, whereas species with an arctic and arctic-alpine distribution dominate at high altitudes and latitudes. Periodic events in the population dynamics of certain plant and animal species distinguish the ecosystems at high latitudes from those at low latitude. The effects of global change are likely to become most pronounced in the north since the rate at which the ultraviolet-B (UV-B) absorbing ozone layer is being reduced and the increase in concentration of «greenhouse gases» in the atmosphere are both higher in the arctic than in regions further south. Changes in the ecosystems due to increased direct human impacts are also likely to occur in some areas.[fr] À l'exception des conditions solaires, le climat des montagnes dites «Caledonian», au Nord de l'Europe, est beaucoup plus influencé par la proximité de l'Océan Atlantique et le Goulf Stream que par l'altitude ou la latitude. La durée de la photopériode pendant la saison de végétation augmente avec la latitude, tandis que la radiation solaire total s'abaisse. À des altitudes et latitudes basses, les landes riches en espèces à distribution boréale deviennent caractéristiques, tandis que les espèces arctiques et artico-alpines dominent dans les hautes altitudes ou latitudes. Des événements périodiques dans la dynamique de la population de certains animaux ou plantes peuvent distinguer les écosystèmes des hautes latitudes de ceux de basse latitude. Les effets du changement climatique global seraient bien sûr plus prononcés au nord, car d'une part le taux d'absortion de Vultraviolet-B (UV-B) par la couche d'ozone devient plus bas et d'autre part la concentration de gaz à effet de serre est plus forte dans les régions arctiques que plus au sud. De plus, dans certaines régions, il y a de changements dans les écosystèmes dûs à un impact direct croissant des activités humaines. [es] Condiciones solares aparte, el clima de las montañas caledonianas, situadas en el N de Europa, viene condicionado por la cercanía del Océano Atlántico y la corriente del Golfo, más que por la latitud y la altitud. Es sabido que la duración del fotoperíodo en el período de crecimiento vegetativo se incrementa con la latitud, aunque el flujo total solar descienda. Los brezales en cuya composición entran especies de distribución boreal son muy característicos de las bajas altitudes y latitudes. Ahora bien, las perturbaciones periódicas que tienen lugar en la dinámica poblacional de ciertas plantas o animales distinguen los ecosistemas de latitudes elevadas de los que están situados a baja latitud. Sin duda, los efectos del cambio global serán más intensos en el Norte, por cuanto la tasa de absorción de rayos ultravioleta B (UV-B) por parte de la capa de ozono se aminora y el incremento de la concentración de los «gases-invernadero» es consecuentemente mayor en el Ártico que en las zonas más meridionales. Además, en los ecosistemas también se están notando cambios por causa de los crecientes impactos directos de las actividades humanas en ciertas áreas

Combined detection and introgression of QTL in outbred populations

<p>Abstract</p> <p>Background</p> <p>Detecting a QTL is only the first step in genetic improvement programs. When a QTL with desirable characteristics is found, e.g. in a wild or unimproved population, it may be interesting to introgress the detected QTL into the commercial population. One approach to shorten the time needed for introgression is to combine both QTL identification and introgression, into a single step. This combines the strengths of fine mapping and backcrossing and paves the way for introgression of desirable but unknown QTL into recipient animal and plant lines.</p> <p>Methods</p> <p>The method consisting in combining QTL mapping and gene introgression has been extended from inbred to outbred populations in which QTL allele frequencies vary both in recipient and donor lines in different scenarios and for which polygenic effects are included in order to model background genes. The effectiveness of the combined QTL detection and introgression procedure was evaluated by simulation through four backcross generations.</p> <p>Results</p> <p>The allele substitution effect is underestimated when the favourable QTL allele is not fixed in the donor line. This underestimation is proportional to the frequency differences of the favourable QTL allele between the lines. In most scenarios, the estimates of the QTL location are unbiased and accurate. The retained donor chromosome segment and linkage drag are similar to expected values from other published studies.</p> <p>Conclusions</p> <p>In general, our results show that it is possible to combine QTL detection and introgression even in outbred species. Separating QTL mapping and introgression processes is often thought to be longer and more costly. However, using a combined process saves at least one generation. With respect to the linkage drag and obligatory drag, the results of the combined detection and introgression scheme are very similar to those of traditional introgression schemes.</p

Methane Production Pathway Regulated Proximally by Substrate Availability and Distally by Temperature in a High-Latitude Mire Complex

Projected 21st century changes in high-latitude climate are expected to have significant impacts on permafrost thaw, which could cause substantial increases in emissions to the atmosphere of carbon dioxide (CO2) and methane (CH4, which has a global warming potential 28 times larger than CO2 over a 100-year horizon). However, predicted CH4 emission rates are very uncertain due to difficulties in modeling complex interactions among hydrological, thermal, biogeochemical, and plant processes. Methanogenic production pathways (i.e., acetoclastic [AM] and hydrogenotrophic [HM]) and the magnitude of CH4 emissions may both change as permafrost thaws, but a mechanistic analysis of controls on such shifts in CH4 dynamics is lacking. In this study, we reproduced observed shifts in CH4 emissions and production pathways with a comprehensive biogeochemical model (ecosys) at the Stordalen Mire in subarctic Sweden. Our results demonstrate that soil temperature changes differently affect AM and HM substrate availability, which regulates magnitudes of AM, HM, and thereby net CH4 emissions. We predict very large landscape-scale, vertical, and temporal variations in the modeled HM fraction, highlighting that measurement strategies for metrics that compare CH4 production pathways could benefit from model informed scale of temporal and spatial variance. Finally, our findings suggest that the warming and wetting trends projected in northern peatlands could enhance peatland AM fraction and CH4 emissions even without further permafrost degradation

Effect of non-random mating on genomic and BLUP selection schemes

<p>Abstract</p> <p>Background</p> <p>The risk of long-term unequal contribution of mating pairs to the gene pool is that deleterious recessive genes can be expressed. Such consequences could be alleviated by appropriately designing and optimizing breeding schemes i.e. by improving selection and mating procedures.</p> <p>Methods</p> <p>We studied the effect of mating designs, random, minimum coancestry and minimum covariance of ancestral contributions on rate of inbreeding and genetic gain for schemes with different information sources, i.e. sib test or own performance records, different genetic evaluation methods, i.e. BLUP or genomic selection, and different family structures, i.e. factorial or pair-wise.</p> <p>Results</p> <p>Results showed that substantial differences in rates of inbreeding due to mating design were present under schemes with a pair-wise family structure, for which minimum coancestry turned out to be more effective to generate lower rates of inbreeding. Specifically, substantial reductions in rates of inbreeding were observed in schemes using sib test records and BLUP evaluation. However, with a factorial family structure, differences in rates of inbreeding due mating designs were minor. Moreover, non-random mating had only a small effect in breeding schemes that used genomic evaluation, regardless of the information source.</p> <p>Conclusions</p> <p>It was concluded that minimum coancestry remains an efficient mating design when BLUP is used for genetic evaluation or when the size of the population is small, whereas the effect of non-random mating is smaller in schemes using genomic evaluation.</p

Pulsatile Wall Motion (PWM) Measurements after Endovascular Abdominal Aortic Aneurysm Exclusion are not Useful in the Classification of Endoleak

AbstractThe pulsatile wall motion (PWM) of AAA is reduced after endovascular stent-graft placement. The purpose of this study was to identify whether PWM after endografting was useful in the classification of endoleak.Patients and Methods162 patients treated with EVAR underwent pre- and post-operative PWM assessment with ultrasonography. Follow-up was 1–9 years. 111 patients had well-excluded aneurysms, three patients had enlarging aneurysms without any recognizable endoleak (endotension), 16 had type I, 31 had type II and 1 had type III endoleak.ResultsThe PWM was reduced from about 1mm pre-operatively to 0.24mm post-operatively in well-excluded aneurysms. PWM remained stable during follow-up. Type I endoleak was associated with moderately reduced PWM (proximal endoleak 0.79mm and distal 0.32mm). PWM in patients with type II endoleak was higher (0.32mm) post-operatively (p=0.002) compared to well-excluded aneurysms.ConclusionPWM is permanently reduced after endografting. The smallest reduction in PWM was in patients with type II endoleaks. However, the overlap between the groups does not allow reliable identification of patients having endoleak with PWM-measurements

Strategies for implementing genomic selection in family-based aquaculture breeding schemes: double haploid sib test populations

<p>Abstract</p> <p>Background</p> <p>Simulation studies have shown that accuracy and genetic gain are increased in genomic selection schemes compared to traditional aquaculture sib-based schemes. In genomic selection, accuracy of selection can be maximized by increasing the precision of the estimation of SNP effects and by maximizing the relationships between test sibs and candidate sibs. Another means of increasing the accuracy of the estimation of SNP effects is to create individuals in the test population with extreme genotypes. The latter approach was studied here with creation of double haploids and use of non-random mating designs.</p> <p>Methods</p> <p>Six alternative breeding schemes were simulated in which the design of the test population was varied: test sibs inherited maternal (<it>Mat</it>), paternal (<it>Pat</it>) or a mixture of maternal and paternal (<it>MatPat</it>) double haploid genomes or test sibs were obtained by maximum coancestry mating (<it>MaxC</it>), minimum coancestry mating (<it>MinC</it>), or random (<it>RAND</it>) mating. Three thousand test sibs and 3000 candidate sibs were genotyped. The test sibs were recorded for a trait that could not be measured on the candidates and were used to estimate SNP effects. Selection was done by truncation on genome-wide estimated breeding values and 100 individuals were selected as parents each generation, equally divided between both sexes.</p> <p>Results</p> <p>Results showed a 7 to 19% increase in selection accuracy and a 6 to 22% increase in genetic gain in the <it>MatPat</it> scheme compared to the <it>RAND</it> scheme. These increases were greater with lower heritabilities. Among all other scenarios, i.e. <it>Mat, Pat, MaxC</it>, and <it>MinC</it>, no substantial differences in selection accuracy and genetic gain were observed.</p> <p>Conclusions</p> <p>In conclusion, a test population designed with a mixture of paternal and maternal double haploids, i.e. the <it>MatPat</it> scheme, increases substantially the accuracy of selection and genetic gain. This will be particularly interesting for traits that cannot be recorded on the selection candidates and require the use of sib tests, such as disease resistance and meat quality.</p

The use of communal rearing of families and DNA pooling in aquaculture genomic selection schemes

<p>Abstract</p> <p>Background</p> <p>Traditional family-based aquaculture breeding programs, in which families are kept separately until individual tagging and most traits are measured on the sibs of the candidates, are costly and require a high level of reproductive control. The most widely used alternative is a selection scheme, where families are reared communally and the candidates are selected based on their own individual measurements of the traits under selection. However, in the latter selection schemes, inclusion of new traits depends on the availability of non-invasive techniques to measure the traits on selection candidates. This is a severe limitation of these schemes, especially for disease resistance and fillet quality traits.</p> <p>Methods</p> <p>Here, we present a new selection scheme, which was validated using computer simulations comprising 100 families, among which 1, 10 or 100 were reared communally in groups. Pooling of the DNA from 2000, 20000 or 50000 test individuals with the highest and lowest phenotypes was used to estimate 500, 5000 or 10000 marker effects. One thousand or 2000 out of 20000 candidates were preselected for a growth-like trait. These pre-selected candidates were genotyped, and they were selected on their genome-wide breeding values for a trait that could not be measured on the candidates.</p> <p>Results</p> <p>A high accuracy of selection, i.e. 0.60-0.88 was obtained with 20000-50000 test individuals but it was reduced when only 2000 test individuals were used. This shows the importance of having large numbers of phenotypic records to accurately estimate marker effects. The accuracy of selection decreased with increasing numbers of families per group.</p> <p>Conclusions</p> <p>This new selection scheme combines communal rearing of families, pre-selection of candidates, DNA pooling and genomic selection and makes multi-trait selection possible in aquaculture selection schemes without keeping families separately until individual tagging is possible. The new scheme can also be used for other farmed species, for which the cost of genotyping test individuals may be high, e.g. if trait heritability is low.</p