Comprehensive transcriptomic analysis of cell lines as models of primary tumors across 22 tumor types.

Cancer cell lines are a cornerstone of cancer research but previous studies have shown that not all cell lines are equal in their ability to model primary tumors. Here we present a comprehensive pan-cancer analysis utilizing transcriptomic profiles from The Cancer Genome Atlas and the Cancer Cell Line Encyclopedia to evaluate cell lines as models of primary tumors across 22 tumor types. We perform correlation analysis and gene set enrichment analysis to understand the differences between cell lines and primary tumors. Additionally, we classify cell lines into tumor subtypes in 9 tumor types. We present our pancreatic cancer results as a case study and find that the commonly used cell line MIA PaCa-2 is transcriptionally unrepresentative of primary pancreatic adenocarcinomas. Lastly, we propose a new cell line panel, the TCGA-110-CL, for pan-cancer studies. This study provides a resource to help researchers select more representative cell line models

A Spectral Atlas of the Nu(sub 12) Fundamental of (13)C(12)CH6 in the 12 Micron Region

The recent discovery of the minor isotopomer of ethane, (13)C(12)CH6, in the planetary atmospheres of Jupiter and Neptune, added ethane to the molecules which can be used to determine isotopic (12)C(12)C ratios for the jovian planets. The increased spectral resolution and coverage of the IR and far-IR instruments to be carried on the Cassini mission to Saturn and Titan may enable the detection of the minor isotopomer. Accurate frequency and cross-section measurements of the nu(sub 12) fundamental under controlled laboratory condition are important to interpret current and future planetary spectra. High resolution spectra of the minor isotopomer (13)C(12)CH6 have been recorded in the 12.2 micron region using the Kitt Peak Fourier Transform (FTS) and the Goddard Tunable Diode Laser spectrometer (TDL). In a global fit to 19 molecular constants in a symmetric top Hamiltonian, transition frequencies of the nu(sub 12) fundamental ranging up to J=35 and K=20 have been determined with a standard deviation of less than 0.0005 cm(exp -1). From selected line intensity measurements, a vibrational dipole moment for the nu(sub 12) fundamental has been derived. Observed and calculated spectra covering the region from 740 cm(exp -1) and to 910 cm(exp -1) are presented. A compilation of transition frequencies, line intensities, and lower state energies are included for general use in the astronomical community

ICESat-2 Simulated Data from Airborne Altimetery

Ice, Cloud, and land Elevation Satellite-2 (ICESat-2) is scheduled to launch in 2015 and will carry onboard the Advanced Topographic Laser Altimeter System (ATLAS), which represents a new approach to spaceborne determination of surface elevations. Specifically, the current ATLAS design is for a micropulse, multibeam, photon-counting laser altimeter with lower energy, a shorter pulse width, and a higher repetition rate relative to the Geoscience Laser Altimeter (GLAS), the instrument that was onboard ICESat. Given the new and untested technology associated with ATLAS, airborne altimetry data is necessary (1) to test the proposed ATLAS instrument geometry, (2) to validate instrument models, and (3) to assess the atmospheric effects on multibeam altimeters. We present an overview of the airborne instruments and datasets intended to address the ATLAS instrument concept, including data collected over Greenland (July 2009) using an airborne SBIR prototype 100 channel, photon-counting, terrain mapping altimeter, which addresses the first of these 3 scientific concerns. Additionally, we present the plan for further simulator data collection over vegetated and ice covered regions using Multiple Altimeter Beam Experimental Lidar (MABEL), intended to address the latter two scientific concerns. As the ICESAT-2 project is in the design phase, the particular configuration of the ATLAS instrument may change. However, we expect this work to be relevant as long as ATLAS pursues a photon-counting approach

Slip Behavior and Hardness Indentations in MnSe and MnSe-MnS Solid Solutions

Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/65510/1/j.1151-2916.1969.tb11957.x.pd

Enabling precision medicine in neonatology, an integrated repository for preterm birth research.

Preterm birth, or the delivery of an infant prior to 37 weeks of gestation, is a significant cause of infant morbidity and mortality. In the last decade, the advent and continued development of molecular profiling technologies has enabled researchers to generate vast amount of 'omics' data, which together with integrative computational approaches, can help refine the current knowledge about disease mechanisms, diagnostics, and therapeutics. Here we describe the March of Dimes' Database for Preterm Birth Research (http://www.immport.org/resources/mod), a unique resource that contains a variety of 'omics' datasets related to preterm birth. The database is open publicly, and as of January 2018, links 13 molecular studies with data across tens of thousands of patients from 6 measurement modalities. The data in the repository are highly diverse and include genomic, transcriptomic, immunological, and microbiome data. Relevant datasets are augmented with additional molecular characterizations of almost 25,000 biological samples from public databases. We believe our data-sharing efforts will lead to enhanced research collaborations and coordination accelerating the overall pace of discovery in preterm birth research

Annihilation Emission from the Galactic Black Hole

Both diffuse high energy gamma-rays and an extended electron-positron annihilation line emission have been observed in the Galactic Center (GC) region. Although X-ray observations indicate that the galactic black hole Sgr A$^*$ is inactive now, we suggest that Sgr A$^*$ can become active when a captured star is tidally disrupted and matter is accreted into the black hole. As a consequence the galactic black hole could be a powerful source of relativistic protons. We are able to explain the current observed diffuse gamma-rays and the very detailed 511 keV annihilation line of secondary positrons by $p-p$ collisions of such protons, with appropriate injection times and energy. Relativistic protons could have been injected into the ambient material if the black hole captured a 50M$_\odot$ star at several tens million years ago. An alternative possibility is that the black hole continues to capture stars with $\sim$1M$_\odot$ every hundred thousand years. Secondary positrons produced by $p-p$ collisions at energies \ga 30 MeV are cooled down to thermal energies by Coulomb collisions, and annihilate in the warm neutral and ionized phases of the interstellar medium with temperatures about several eV, because the annihilation cross-section reaches its maximum at these temperatures. It takes about ten million years for the positrons to cool down to thermal temperatures so they can diffuse into a very large extended region around the Galactic center. A much more recent star capture may be also able to account for recent TeV observations within 10 pc of the galactic center as well as for the unidentified GeV gamma-ray sources found by EGRET at GC. The spectral difference between the GeV flux and the TeV flux could be explained naturally in this model as well.Comment: Accepted by ApJ on March 24, 200

A Classifier-based approach to identify genetic similarities between diseases

Motivation: Genome-wide association studies are commonly used to identify possible associations between genetic variations and diseases. These studies mainly focus on identifying individual single nucleotide polymorphisms (SNPs) potentially linked with one disease of interest. In this work, we introduce a novel methodology that identifies similarities between diseases using information from a large number of SNPs. We separate the diseases for which we have individual genotype data into one reference disease and several query diseases. We train a classifier that distinguishes between individuals that have the reference disease and a set of control individuals. This classifier is then used to classify the individuals that have the query diseases. We can then rank query diseases according to the average classification of the individuals in each disease set, and identify which of the query diseases are more similar to the reference disease. We repeat these classification and comparison steps so that each disease is used once as reference disease

Near-infrared imaging of FSC 10214+4724 with the W. M. Keck Telescope

Near-infrared observations of the z = 2.286 IRAS source FSC 10214+4724, made with the near-infrared camera on the W. M. Keck Telescope, are reported. Deep broad-band images at 2.15 and 1.27 micrometers, and narrow-band images at 2.165 and 2.125 µm with 0.”6 to 0.”9 seeing show that FSC 10214+4724 consists of at least three distinct components in a compact group of galaxies. The source of the infrared luminosity appears to be in a strongly interacting galaxy that has a luminosity of ~100 times that of a present-day L* galaxy. The interaction suggests and 'age' of this galaxy of ≃ 10^9 yr. The Hα emission is resolved as a source of diameter ≃ 5 kpc, suggesting that a starburst contributes to the observed Hα emission. There is an excess of objects in the FSC 10214+4724 field that could represent galaxies in an associated cluster

Generation of small-scale structures in the developed turbulence

The Navier-Stokes equation for incompressible liquid is considered in the limit of infinitely large Reynolds number. It is assumed that the flow instability leads to generation of steady-state large-scale pulsations. The excitation and evolution of the small-scale turbulence is investigated. It is shown that the developed small-scale pulsations are intermittent. The maximal amplitude of the vorticity fluctuations is reached along the vortex filaments. Basing on the obtained solution, the pair correlation function in the limit $r\to 0$ is calculated. It is shown that the function obeys the Kolmogorov law $r^{2/3}$.Comment: 18 page

Robotics Platforms Incorporating Manipulators Having Common Joint Designs

Manipulators in accordance with various embodiments of the invention can be utilized to implement statically stable robots capable of both dexterous manipulation and versatile mobility. Manipulators in accordance with one embodiment of the invention include: an azimuth actuator; three elbow joints that each include two actuators that are offset to allow greater than 360 degree rotation of each joint; a first connecting structure that connects the azimuth actuator and a first of the three elbow joints; a second connecting structure that connects the first elbow joint and a second of the three elbow joints; a third connecting structure that connects the second elbow joint to a third of the three elbow joints; and an end-effector interface connected to the third of the three elbow joints