Correcting mean-field approximations for spatially-dependent advection-diffusion-reaction processes

On the microscale, migration, proliferation and death are crucial in the development, homeostasis and repair of an organism; on the macroscale, such effects are important in the sustainability of a population in its environment. Dependent on the relative rates of migration, proliferation and death, spatial heterogeneity may arise within an initially uniform field; this leads to the formation of spatial correlations and can have a negative impact upon population growth. Usually, such effects are neglected in modeling studies and simple phenomenological descriptions, such as the logistic model, are used to model population growth. In this work we outline some methods for analyzing exclusion processes which include agent proliferation, death and motility in two and three spatial dimensions with spatially homogeneous initial conditions. The mean-field description for these types of processes is of logistic form; we show that, under certain parameter conditions, such systems may display large deviations from the mean field, and suggest computationally tractable methods to correct the logistic-type description

Models of collective cell motion for cell populations with different aspect ratio: diffusion, proliferation & travelling waves

Continuum, partial differential equation models are often used to describe the collective motion of cell populations, with various types of motility represented by the choice of diffusion coefficient, and cell proliferation captured by the source terms. Previously, the choice of diffusion coefficient has been largely arbitrary, with the decision to choose a particular linear or nonlinear form generally based on calibration arguments rather than making any physical connection with the underlying individual-level properties of the cell motility mechanism. In this work we provide a new link between individual-level models, which account for important cell properties such as varying cell shape and volume exclusion, and population-level partial differential equation models. We work in an exclusion process framework, considering aligned, elongated cells that may occupy more than one lattice site, in order to represent populations of agents with different sizes. Three different idealisations of the individual-level mechanism are proposed, and these are connected to three different partial differential equations, each with a different diffusion coefficient; one linear, one nonlinear and degenerate and one nonlinear and nondegenerate. We test the ability of these three models to predict the population-level response of a cell spreading problem for both proliferative and nonproliferative cases. We also explore the potential of our models to predict long time travelling wave invasion rates and extend our results to two-dimensional spreading and invasion. Our results show that each model can accurately predict density data for nonproliferative systems, but that only one does so for proliferative systems. Hence great care must be taken to predict density data with varying cell shape

Microscopic two-nucleon overlaps and knockout reactions from 12^{12}C

The nuclear structure dependence of direct reactions that remove a pair of like or unlike nucleons from a fast $^{12}$C projectile beam are considered. Specifically, we study the differences in the two-nucleon correlations present and the predicted removal cross sections when using $p$-shell shell-model and multi-$\hbar\omega$ no-core shell-model (NCSM) descriptions of the two-nucleon overlaps for the transitions to the mass $A$=10 projectile residues. The NCSM calculations use modern chiral two-nucleon and three-nucleon (NN+3N) interactions. The $np$-removal cross sections to low-lying $T$=0, $^{10}$B final states are enhanced when using the NCSM two-nucleon amplitudes. The calculated absolute and relative partial cross sections to the low energy $^{10}$B final states show a significant sensitivity to the interactions used, suggesting that assessments of the overlap functions for these transitions and confirmations of their structure could be made using final-state-exclusive measurements of the $np$-removal cross sections and the associated momentum distributions of the forward travelling projectile-like residues.Comment: 9 pages, 7 figure

Models of collective cell spreading with variable cell aspect ration: a motivation for degenerate diffusion models

Continuum diffusion models are often used to represent the collective motion of cell populations. Most previous studies have simply used linear diffusion to represent collective cell spreading, while others found that degenerate nonlinear diffusion provides a better match to experimental cell density profiles. In the cell modeling literature there is no guidance available with regard to which approach is more appropriate for representing the spreading of cell populations. Furthermore, there is no knowledge of particular experimental measurements that can be made to distinguish between situations where these two models are appropriate. Here we provide a link between individual-based and continuum models using a multiscale approach in which we analyze the collective motion of a population of interacting agents in a generalized lattice-based exclusion process. For round agents that occupy a single lattice site, we find that the relevant continuum description of the system is a linear diffusion equation, whereas for elongated rod-shaped agents that occupy L adjacent lattice sites we find that the relevant continuum description is connected to the porous media equation (PME). The exponent in the nonlinear diffusivity function is related to the aspect ratio of the agents. Our work provides a physical connection between modeling collective cell spreading and the use of either the linear diffusion equation or the PME to represent cell density profiles. Results suggest that when using continuum models to represent cell population spreading, we should take care to account for variations in the cell aspect ratio because different aspect ratios lead to different continuum models

Considerations for the design of an onboard air traffic situation display

The basic concept of remoting information to the cockpit is used to design and develop a computerized airborne traffic situation display device that automatically selects and presents segments of a controller's scope to the aircraft pilot via a narrow band digital data link. These data are integrated with aircraft heading and navigation information to provide a display useful in congested air space. The display can include alphanumerical symbols, air route maps, and controller instructions

Magnetic induction mapping of magnetite chains in magnetotactic bacteria at room temperature and close to the Verwey transition using electron holography

Off-axis electron holography in the transmission electron microscope is used to record magnetic induction maps of closely spaced magnetite crystals in magnetotactic bacteria at room temperature and after cooling the sample using liquid nitrogen. The magnetic microstructure is related to the morphology and crystallography of the particles, and to interparticle interactions. At room temperature, the magnetic signal is dominated by interactions and shape anisotropy, with highly parallel and straight field lines following the axis of each chain of crystals closely. In contrast, at low temperature the magnetic induction undulates along the length of the chain. This behaviour may result from a competition between interparticle interactions and an easy axis of magnetisation that is no longer parallel to the chain axis. The quantitative nature of electron holography also allows the change in magnetisation in the crystals with temperature to be measured

The ionization structure of the Orion nebula: Infrared line observations and models

Observations of the (O III) 52 and 88 micron lines and the (N III) 57 micron line have been made at 6 positions and the (Ne III) 36 micron line at 4 positions in the Orion Nebula to probe its ionization structure. The measurements, made with a -40" diameter beam, were spaced every 45" in a line south from and including the Trapezium. The wavelength of the (Ne III) line was measured to be 36.013 + or - 0.004 micron. Electron densities and abundance ratios of N(++)/O(++) have been calculated and compared to other radio and optical observations. Detailed one component and two component (bar plus halo) spherical models were calculated for exciting stars with effective temperatures of 37 to 40,000K and log g = 4.0 and 4.5. Both the new infrared observations and the visible line measurements of oxygen and nitrogen require T sub eff approx less than 37,000K. However, the double ionized neon requires a model with T sub eff more than or equal to 39,000K, which is more consistent with that inferred from the radio flux or spectral type. These differences in T sub eff are not due to effects of dust on the stellar radiation field, but are probably due to inaccuracies in the assumed stellar spectrum. The observed N(++)/O(++) ratio is almost twice the N(+)/O(+) ratio. The best fit models give N/H = 8.4 x 10 to the -5 power, O/H = 4.0 x 10 to the -4 power, and Ne/H = 1.3 x 10 to the -4 power. Thus neon and nitrogen are approximately solar, but oxygen is half solar in abundance. From the infrared O(++) lines it is concluded that the ionization bar results from an increase in column depth rather than from a local density enhancement

Reconciling transport models across scales: the role of volume exclusion

Diffusive transport is a universal phenomenon, throughout both biological and physical sciences, and models of diffusion are routinely used to interrogate diffusion-driven processes. However, most models neglect to take into account the role of volume exclusion, which can significantly alter diffusive transport, particularly within biological systems where the diffusing particles might occupy a significant fraction of the available space. In this work we use a random walk approach to provide a means to reconcile models that incorporate crowding effects on different spatial scales. Our work demonstrates that coarse-grained models incorporating simplified descriptions of excluded volume can be used in many circumstances, but that care must be taken in pushing the coarse-graining process too far

Tradeoff analysis of technology needs for public service helicopters

The design requirements for a family or type of Public Service Helicopter (PSH) is examined which will satisfy the needs of municipal and state governments in the following mission areas: Emergency Medical Service--Airborne Rescue Squad; Law Enforcement; Search and Rescue; and Environmental Control (Fire Fighting, Pollution, Resource Management). The report compares both design and performance requirements as specified by the PSH user's group against current technological capabilities, RTOPS and US Army LHX design requirements. The study explores various design trade-offs and options available to the aircraft designer/manufacturer in order to meet the several criteria specified by the PSH user's group. In addition, the report includes a brief assessment of the feasibility of employing certain advanced rotorcraft designs to meet the stringent combination of operational capabilities desired by the Public Service Helicopter Users