Antibodies Responses to SARS-CoV-2 in a Large Cohort of Vaccinated Subjects and Seropositive Patients

COVID-19 is a current global threat, and the characterization of antibody response is vitally important to update vaccine development and strategies. In this study we assessed SARS-CoV-2 antibody concentrations in SARS-CoV-2 positive patients (N = 272) and subjects vaccinated with the BNT162b2 m-RNA COVID-19 vaccine (N = 1256). For each participant, socio-demographic data, COVID-19 vaccination records, serological analyses, and SARS-CoV-2 infection status were collected. IgG antibodies against S1/S2 antigens of SARS-CoV-2 were detected. Almost all vaccinated subjects (99.8%) showed a seropositivity to anti-SARS-COV-2 IgG and more than 80% of vaccinated subjects had IgG concentrations > 200 AU/mL. In a Tobit multivariable regression analysis, SARS-CoV-2 vaccination was statistically significantly associated with increased IgG concentrations (β coef = 266.4; p < 0.001). A statistically significant reduction in SARS-CoV-2 IgG concentrations was found with older age (β coef = -1.96 per year increase; p < 0.001), male sex (β coef = -22.3; p < 0.001), and days after immunization (β coef = -1.67 per day increase; p < 0.001). Our findings could support the vaccination campaigns confirming the high immunogenicity of the SARS-CoV-2 vaccine under investigation with respect to the natural infection. Further studies will be required for evaluating the role of age and days after immunization in the persistence of vaccine antibodies and protection from the disease

Condition of pteropod shells near a volcanic CO2 vent region

Natural gradients of pH in the ocean are useful analogues for studying the projected impacts of Ocean Acidification (OA) on marine ecosystems. Here we document the in situ impact of submarine CO2 volcanic emissions (CO2 vents) on live shelled-pteropods (planktonic gastropods) species Creseis conica in the Gulf of Naples (Tyrrhenian Sea, Mediterranean). Since the currents inside the Gulf will likely drive those pelagic calcifying organisms into and out of the CO2 vent zones, we assume that pteropods will be occasionally exposed to the vents during their life cycle. Shell degradation and biomass were investigated in the stations located within and nearby the CO2 vent emission in relation to the variability of sea water carbonate chemistry. A relative decrease in shell biomass (22%), increase in incidence of shell fractures (38%) and extent of dissolution were observed in Creseis conica collected in the Gulf of Naples compared to those from the Northern Tyrrhenian Sea (control stations). These results suggest that discontinuous but recurrent exposure to highly variable carbonate chemistry could consistently affect the characteristic of the pteropod shells

Growth variability in Atlantic horse mackerel Trachurus trachurus (Linneus, 1758) across the central Mediterranean Sea: contrasting latitudinal gradient and different ecosystems

Data on Atlantic horse mackerel Trachurus trachurus (Linneus, 1758) were collected along 8-year acoustic surveys (2011-2018). Age and growth variability of horse mackerel from the Central Mediterranean Sea were investigated within different, contrasting habitats, from the south of Sicily to the north Tyrrhenian (Ligurian Sea). Data from satellite provided the habitat features along the study period over the whole surveyed area. For comparison purposes, according to the ecosystems difference the study area has been split into four subareas: Strait of Sicily (SoS), North of Sicily (NS), south Tyrrhenian Sea (ST) and north Tyrrhenian Sea (NT). In terms of the FAO Geographical Sub-Area definition the SoS corresponding to GSA15 and 16, NS to GSA 10 south, ST to GSA10 north and NT to GSA 9. Results showed a growth homogeneity in the study area, suggesting a unique stock inhabiting these waters. The only exception was recorded for juveniles (Age 0 class) in the SoS, where a lower size at age was detected compared to other areas. A multiple linear modelling analyses suggested that variability in length at age 0 was mainly linked to the oceanographic differences between an upwelling driven system (Strait of Sicily) and the other ecosystems, where enrichment processes are mainly due to river runoff (relevant in ST and NT). Namely, Absolute Dynamic Topography (ADT) and body condition factor (Kn) were significantly related to differences in length at age 0. Results revealed that currents (and gyres) are among the principal abiotic factors controlling Atlantic horse mackerel growth in its first year of life, suggesting that circulation and food-related processes (i.e., zooplankton concentration) are of major importance for this species. Finally preliminary observations suggest the Strait of Sicily may be the main spawning area among those analyzed

Calreticulin affects hematopoietic stem/progenitor cell fate by impacting erythroid and megakaryocytic differentiation

Calreticulin (CALR) is a chaperone protein that localizes primarily to the endoplasmic reticulum (ER) lumen where it is responsible for the control of proper folding of neo-synthesized glycoproteins and for the retention of calcium. Recently, mutations affecting exon 9 of the CALR gene have been described in approximately 40% of patients with myeloproliferative neoplasms (MPNs). Although the role of mutated CALR in the development of MPNs has begun to be clarified, there are still no data available on the function of wild-type (WT) CALR during physiological hematopoiesis. In order to shed light on the role of WT CALR during normal hematopoiesis, we performed gene silencing and overexpression experiments in Hematopoietic Stem Progenitor Cells (HSPCs). Our results showed that CALR overexpression is able to affect physiological hematopoiesis by enhancing both erythroid and megakaryocytic (MK) differentiation. In agreement with overexpression data, CALR silencing caused a significant decrease in both erythroid and MK differentiation of human HSPCs. Gene expression profiling (GEP) analysis showed that CALR is able to affect the expression of several genes involved in HSPCs differentiation towards both the erythroid and MK lineages. Moreover, GEP data also highlighted the modulation of several genes involved in ER stress response, unfolded protein response (UPR), DNA repair and of several genes already described to play a role in MPN development, such as pro-inflammatory cytokines and hematological neoplasms-related markers. Altogether, our data unraveled a new and unexpected role for CALR in the regulation of normal hematopoietic differentiation. Moreover, by showing the impact of CALR on the expression of genes involved in several biological processes already described in cellular transformation, our data strongly suggest a more complex role for CALR in MPN development that goes beyond the activation of the THPO receptor and involves ER stress response, UPR and DNA repair

Variability of water mass properties in the Strait of Sicily in summer period of 1998–2013

The Strait of Sicily plays a crucial role in determining the water-mass exchanges and related properties between the western and eastern Mediterranean. Hydrographic measurements carried out from 1998 to 2013 allowed the identification of the main water masses present in the Strait of Sicily: a surface layer composed of Atlantic water (AW) flowing eastward, intermediate and deep layers mainly composed of Levantine intermediate water (LIW), and transitional eastern Mediterranean deep water (tEMDW) flowing in the opposite direction. Furthermore, for the first time, the signature of intermittent presence of western intermediate water (WIW) is also highlighted in the northwestern part of the study area (12.235◦ E, 37.705◦ N). The excellent area coverage allowed to highlight the high horizontal and vertical inter-annual variability affecting the study area and also to recognize the permanent character of the main mesoscale phenomena present in the surface water layer. Moreover, strong temperature-salinity correlations in the intermediate layer, for specific time intervals, seem to be linked to the reversal of surface circulation in the central Ionian Sea. The analysis of CTD data in deeper water layer indicates the presence of a large volume of tEMDW in the Strait of Sicily during the summers of 2006 and 2009.peer-reviewe

Relazione tecnica sulle attività della campagna oceanografica “Ancheva 2015”

Nelle acque Italiane dello Stretto di Sicilia sin dal 1998 vengono effettuate ogni anno campagne di valutazione dell’abbondanza e distribuzione della biomassa pelagica con l’impiego di strumentazione elettroacustica. Dal 2009 lo svolgimento dei survey acustici è parte integrante del Progetto MEDIAS (MEDiterranean International Acoustic Survey), inserito dagli Stati Membri partecipanti al Progetto all'interno del Programma Nazionale 2014-2016. Il Progetto prevede lo svolgimento di survey acustici annuali con lo scopo di valutare la biomassa e la distribuzione spaziale dei piccoli pelagici in aree del Mediterraneo, appartenenti all’Unione Europea. Le specie target sono le principali specie commerciali di piccoli pelagici in Mediterraneo, ovvero l’acciuga (Engraulis encrasicolus) e la sardina (Sardina pilchardus). Si tratta di specie a ciclo di vita breve caratterizzate da ampie oscillazioni interannuali nella biomassa. Negli anni in cui i livelli di biomassa sono particolarmente bassi l’effetto di un elevato sforzo di pesca porterebbe ad un collasso di tali risorse anche da un anno all’altro. Il collasso di tali specie è stato ben documentato in letteratura mostrando che i tempi di recupero sono molto lunghi e hanno effetti socio-economici catastrofici anche sulle comunità marinare che vivono grazie agli introiti derivanti dalla pesca e commercializzazione di prodotti in scatola. La presente relazione mostra le attività svolte a seguito del survey condotto a bordo della N/O Dallaporta nello Stretto di Sicilia (GSA 16) nell’estate del 2015. Oltre all’acquisizione dei dati acustici, sono state eseguite stazioni di pesca sui piccoli pelagici con rete da traino pelagica sperimentale (volante monobarca), accessoriata con sensori per il controllo dell’apertura e della posizione della rete nella colonna d’acqua. Nell’area di studio sono stati inoltre acquisiti i profili delle principali variabili oceanografiche con sonda multiparametrica CTD. Il rapporto descrive le diverse procedure adottate per l’analisi dei dati acquisiti ed il trattamento dei campioni biologici raccolti. Per le due specie target viene quindi fornita la distribuzione spaziale e la stima della biomassa, complessiva ma anche suddivisa per classi di taglia e classi di età

Relazione tecnica sulle attività della Campagna oceanografica "Ancheva 2008"

La presente relazione riporta le attività di ricerca svolte nella Campagna oceanografica "Ancheva 2008", nel periodo dal 4 al 14 Agosto 2008 a bordo della N/O "G. Dallaporta". Le suddette attività sono state parte integrante del Progetto "lAboratori di testing per dispositivi eLettroacustici, sensorI oceanograFici e metodologie finalizzati al monitoraggio dello stato delle risorse biologiche del mare" (ALIF), finanziato dal CIPE attraverso l’Assessorato Industria della Regione Sicilia. Alla Campagna oceanografica hanno partecipato i seguenti Enti: 1. Istituto per l’Ambiente Marino Costiero (IAMC), CNR, U.O. (TP); 2. Istituto Scienze Marine (ISMAR–CNR), Sezione Pesca Marittima, CNR, Ancona; 3. FAO - MedSudMed Project; 4. Malta Centre for Fisheries Sciences (MCFS), Fort S. Lucjan, MarsaXlokk, Malta. L'obiettivo della Campagna oceanografica è stato quello di valutare la distribuzione e l’abbondanza di piccoli pelagici, prevalentemente sardina (Sardina pilchardus) e acciuga (Engraulis encrasicolus), con l’impiego di strumentazione elettroacustica. Nella prima parte, l’area di lavoro è stata delimitata dalla piattaforma meridionale della Sicilia (da Marsala a oltre Capo Passero), nella seconda parte è stata poi studiata la piattaforma continentale di Malta. Le attività svolte sono di seguito descritte sinteticamente: - Rilevazioni acustiche degli stock di piccoli pelagici con echosounder scientifico “Simrad EK60”, con trasduttori split beam a scafo; - Campionamenti biologici di piccoli pelagici con rete pelagica dotata di sistema acustico “Simrad ITI” per il controllo della geometria della rete durante le attività di campionamento; - Campionamento acqua per la misurazione dei parametri fisico-chimici della colonna d’acqua con la sonda multiparametrica “Seabird 9/11”

Role of interferon lambda 4 and ALT levels in optimising treatment of HCV for patients with low-stage fibrosis

The use of new anti-HCV drugs is currently limited by high costs and dual therapy; pegylated interferon and ribavirin (peg-IFN+RBV) still represents the only affordable treatment in patients with low-stage fibrosis. We evaluated the role of Interferon lambda4 (IFNL4) polymorphisms and its combination with on-treatment alanine transaminase (ALT) modification in predicting sustained virological response (SVR) in HCV genotype 1 and 4 patients with low-stage fibrosis. We retrospectively analysed 124 patients with Metavir ≤F2, who received dual therapy at our centre. Genotyping for IFNL4 polymorphisms was assessed at baseline, as well as ALT levels (baseline and week 2, 4, 12 and 24 of therapy). Thirty patients (24%) were TT/TT, 74 (60%) TT/DG and 20 (16%) DG/DG. The SVR rate was significantly higher in TT/TT genotype compare to TT/DG and DG/DG (97% vs. 53% and 50%, respectively, p=0.001). Patients that achieved a 60% reduction of ALT baseline value after 4 weeks of therapy had a significantly higher SVR rate (94% vs. 52%, p<0.001). Factors significantly associated with SVR were TT/TT genotype (p=0.029), RVR (p=0.019) and 60% ALT reduction at 4 week of therapy (p=0.005). The absence of both TT/TT genotype and 60% ALT reduction were negative predictors of SVR (p<0.001). In conclusion, the combined use of IFNL4 polymorphisms and ALT reduction at 4 week of treatment is able to optimize candidates’ selection for peg-IFN+RBV, discriminating those that could still benefit from dual therapy from the ones that need the new regimen

Role of TGF-\u3b21/miR-382-5p/SOD2 axis in the induction of oxidative stress in CD34+ cells from primary myelofibrosis

Primary myelofibrosis (PMF) is a myeloproliferative neoplasm characterized by an excessive production of pro-inflammatory cytokines resulting in chronic inflammation and genomic instability. Besides the driver mutations in JAK2, MPL, and CALR genes, the deregulation of miRNA expression may also contribute to the pathogenesis of PMF. To this end, we recently reported the upregulation of miR-382-5p in PMF CD34+ cells. In order to unveil the mechanistic details of the role of miR-382-5p in pathogenesis of PMF, we performed gene expression profiling of CD34+ cells overexpressing miR-382-5p. Among the downregulated genes, we identified superoxide dismutase 2 (SOD2), which is a predicted target of miR-382-5p. Subsequently, we confirmed miR-382-5p/SOD2 interaction by luciferase assay and we showed that miR-382-5p overexpression in CD34+ cells causes the decrease in SOD2 activity leading to reactive oxygen species (ROS) accumulation and oxidative DNA damage. In addition, our data indicate that inhibition of miR-382-5p in PMF CD34+ cells restores SOD2 function, induces ROS disposal, and reduces DNA oxidation. Since the pro-inflammatory cytokine transforming growth factor-\u3b21 (TGF-\u3b21) is a key player in PMF pathogenesis, we further investigated the effect of TGF-\u3b21 on ROS and miR-382-5p levels. Our data showed that TGF-\u3b21 treatment enhances miR-382-5p expression and reduces SOD2 activity leading to ROS accumulation. Finally, inhibition of TGF-\u3b21 signaling in PMF CD34+ cells by galunisertib significantly reduced miR-382-5p expression and ROS accumulation and restored SOD2 activity. As a whole, this study reports that TGF-\u3b21/miR-382-5p/SOD2 axis deregulation in PMF cells is linked to ROS overproduction that may contribute to enhanced oxidative stress and inflammation. Our results suggest that galunisertib may represent an effective drug reducing abnormal oxidative stress induced by TGF-\u3b21 in PMF patients. Database linking: GEO: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE103464