816 research outputs found
Exact ground states and correlation functions of chain and ladder models of interacting hardcore bosons or spinless fermions
By removing one empty site between two occupied sites, we map the ground
states of chains of hardcore bosons and spinless fermions with infinite
nearest-neighbor repulsion to ground states of chains of hardcore bosons and
spinless fermions without nearest-neighbor repulsion respectively, and
ultimately in terms of the one-dimensional Fermi sea. We then introduce the
intervening-particle expansion, where we write correlation functions in such
ground states as a systematic sum over conditional expectations, each of which
can be ultimately mapped to a one-dimensional Fermi-sea expectation. Various
ground-state correlation functions are calculated for the bosonic and fermionic
chains with infinite nearest-neighbor repulsion, as well as for a ladder model
of spinless fermions with infinite nearest-neighbor repulsion and correlated
hopping in three limiting cases. We find that the decay of these correlation
functions are governed by surprising power-law exponents.Comment: 20 pages, 18 figures, RevTeX4 clas
Fumaric acid ester–induced renal Fanconi syndrome: evidence of mitochondrial toxicity
Background:
Fumaric acid esters (FAEs) are used to treat chronic plaque psoriasis. Fumarate is a crucial component of the Krebs cycle and mitochondrial function. Proximal tubule cells have high energy demands and rely on aerobic respiration. Proximal tubular dysfunction can cause renal Fanconi syndrome and acute kidney injury. We sought to better understand the mechanism for this in the context of FAE therapy.
Methods:
We describe a case series of 10 patients with FAE-associated Fanconi syndrome. Patients were diagnosed and managed at a tertiary renal tubular disorder clinic, with examination of serum and urine biochemistry. Five patients had a renal biopsy with examination of the specimens by electron microscopy.
Results:
The median age was 36.5 years [interquartile range (IQR) 32.25–54.25]. The median dose of FAE was 720 mg/day (IQR 390–720). There was low molecular weight proteinuria: the median urinary retinol-binding protein (RBP) at presentation was 8385 μg/mL (IQR 2793–14 600) and the RBP:creatinine ratio was 710 (IQR 390–2415). All patients had hyperphosphaturia [median fractional excretion of phosphate 24.2% (IQR 20.8–26.9), normal range <20%] as well as relative hypophosphataemia, with a median serum phosphate concentration of 0.93 mmol/L (IQR 0.83–0.97). Renal histology showed proximal tubular damage and abnormal mitochondrial morphology. Two patients had a favourable biochemical response to treatment with probenecid.
Conclusions:
We document for the first time that FAE-associated renal Fanconi syndrome is associated with mitochondrial damage visible on electron microscopy. This effect may be ameliorated by antagonism of the organic anion transporter with probenecid
A qualitative study on personal hygiene knowledge and practices among food handlers at selected primary schools in Klang Valley area, Selangor, Malaysia
A study was conducted to determine personal hygiene knowledge among 25 food handlers at
12 selected primary schools in Klang Valley area, Selangor, Malaysia. A qualitative approach
using in-depth interviews was employed and respondents were selected by a convenience
sampling. The results showed that the respondents had basic knowledge on personal hygiene
practices, mainly on hand washing (30.7%) and glove use (18.7%). The food handlers (<11%)
also demonstrated their knowledge on other good personal hygiene practices that were related
to the use of hair restrain/cap/apron, keeping tidy hair/ clean nails/ clean hand, no bare hand
contact with food, not wearing ring/jewelry, no smoking, tidy/clean attire and typhoid injection.
Further assessment demonstrated that only 12% respondents were able to describe a reasonable
procedure for hand washing and the steps that were missed most were the failure to specify
the need to rinse and dry hands after washing. The respondents knew that the use of glove was
to prevent bare hand contact (80%) and can reduce risk of food contamination (88%). All the
respondents agreed that food handlers with abrasion or cuts on their fingers or hands should
not touch unwrapped foods. A high percentage respondents (>90%) practiced various good
hand washing practices, with only 36% did not practice washing hands after eating or drinking.
Most respondents (>70%) practiced glove use, however more than 50% did not wash hands
with every glove change, change gloves when change type of products and after preparing raw
material. The study showed that the food handlers have basic knowledge one good personal
hygiene practices. However, some discrepancies were revealed in the proper hand washing
procedure. This study recommended good hand washing procedure to be reiterated among the
food handlers. There is also an immediate need for continuous training among food handlers
regarding good personal hygiene practices
Does the Vulnerable sun bear Helarctos malayanus damage crops and threaten people in oil palm plantations?
Largely as a result of the expansion of oil palm Elaeis guineensis, forest fragmentation has occurred on a large scale in Borneo. There is much concern about how forest-dependent species, such as the Vulnerable sun bear Helarctos malayanus, can persist in this landscape. The absence of sufficient natural food in forest fragments could drive sun bears into oil palm plantations, where they risk coming into conflict with people. We interviewed oil palm plantation workers and farmers in the Lower Kinabatangan region of Sabah, Malaysian Borneo, to ascertain if sun bears were utilizing plantations, if they were causing damage to the crop, and how the bears were perceived by people. To obtain a comparative baseline we extended these questions to include other species as well. We found that bears were rarely encountered in plantations and were not considered to be destructive to the oil palm crop, although they were generally feared. Other species, such as macaques Macaca spp., bearded pigs Sus barbatus, and elephants Elephas maximus, had more destructive feeding habits. Sun bears could use this readily available food resource without being targeted for retribution, although incidental human-related mortality remains a risk. Although bears could gain some nutritional benefit from oil palm, plantations do not provide the diversity of food and cover available in a natural forest
Lower gut abundance of Eubacterium rectale is linked to COVID-19 mortality
IntroductionEmerging preclinical and clinical studies suggest that altered gut microbiome composition and functions are associated with coronavirus 2019 (COVID- 19) severity and its long-term complications. We hypothesize that COVID-19 outcome is associated with gut microbiome status in population-based settings.MethodsGut metagenomic data of the adult population consisting of 2871 subjects from 16 countries were obtained from ExperimentHub through R, while the dynamic death data of COVID-19 patients between January 22, 2020 and December 8, 2020 in each country was acquired from Johns Hopkins Coronavirus Resource Center. An adjusted stable mortality rate (SMR) was used to represent these countries’ mortality and correlated with the mean relative abundance (mRA) of healthy adult gut microbiome species.ResultsAfter excluding bacterial species with low prevalence (prevalence <0.2 in the included countries), the β-diversity was significantly higher in the countries with high SMR when compared with those with median or low SMR (p <0.001). We then identified the mRA of two butyrate producers, Eubacterium rectale and Roseburia intestinalis, that were negatively correlated with SMR during the study period. And the reduction of these species was associated with severer COVID-19 manifestation.ConclusionPopulation-based microbiome signatures with the stable mortality rate of COVID-19 in different countries suggest that altered gut microbiome composition and functions are associated with mortality of COVID-19
TherMos: Estimating protein-DNA binding energies from in vivo binding profiles
Accurately characterizing transcription factor (TF)-DNA affinity is a central goal of regulatory genomics. Although thermodynamics provides the most natural language for describing the continuous range of TF-DNA affinity, traditional motif discovery algorithms focus instead on classification paradigms that aim to discriminate 'bound' and 'unbound' sequences. Moreover, these algorithms do not directly model the distribution of tags in ChIP-seq data. Here, we present a new algorithm named Thermodynamic Modeling of ChIP-seq (TherMos), which directly estimates a positionspecific binding energy matrix (PSEM) from ChIPseq/exo tag profiles. In cross-validation tests on seven genome-wide TF-DNA binding profiles, one of which we generated via ChIP-seq on a complex developing tissue, TherMos predicted quantitative TF-DNA binding with greater accuracy than five well-known algorithms. We experimentally validated TherMos binding energy models for Klf4 and Esrrb, using a novel protocol to measure PSEMs in vitro. Strikingly, our measurements revealed strong nonadditivity at multiple positions within the two PSEMs. Among the algorithms tested, only TherMos was able to model the entire binding energy landscape of Klf4 and Esrrb. Our study reveals new insights into the energetics of TF-DNA binding in vivo and provides an accurate first-principles approach to binding energy inference from ChIP-seq and ChIP-exo data. © 2013 The Author(s).Link_to_subscribed_fulltex
Dislocation Kinks in Copper: Widths, Barriers, Effective Masses, and Quantum Tunneling
We calculate the widths, migration barriers, effective masses, and quantum
tunneling rates of kinks and jogs in extended screw dislocations in copper,
using an effective medium theory interatomic potential. The energy barriers and
effective masses for moving a unit jog one lattice constant are close to
typical atomic energies and masses: tunneling will be rare. The energy barriers
and effective masses for the motion of kinks are unexpectedly small due to the
spreading of the kinks over a large number of atoms. The effective masses of
the kinks are so small that quantum fluctuations will be important. We discuss
implications for quantum creep, kink--based tunneling centers, and Kondo
resonances
Neutrophil gelatinase-associated lipocalin as a marker of tubular damage appears to be unrelated to fractional excretion of sodium as a marker of tubular function in septic patients, with or without AKI
Acute kidney disease and renal recovery : consensus report of the Acute Disease Quality Initiative (ADQI) 16 Workgroup
Consensus definitions have been reached for both acute kidney injury (AKI) and chronic kidney disease (CKD) and these definitions are now routinely used in research and clinical practice. The KDIGO guideline defines AKI as an abrupt decrease in kidney function occurring over 7 days or less, whereas CKD is defined by the persistence of kidney disease for a period of > 90 days. AKI and CKD are increasingly recognized as related entities and in some instances probably represent a continuum of the disease process. For patients in whom pathophysiologic processes are ongoing, the term acute kidney disease (AKD) has been proposed to define the course of disease after AKI; however, definitions of AKD and strategies for the management of patients with AKD are not currently available. In this consensus statement, the Acute Disease Quality Initiative (ADQI) proposes definitions, staging criteria for AKD, and strategies for the management of affected patients. We also make recommendations for areas of future research, which aim to improve understanding of the underlying processes and improve outcomes for patients with AKD
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