Nanotopographic Cell Culture Substrate: Polymer-Demixed Nanotextured Films Under Cell Culture Conditions

Modulating physical cell culture environments via nanoscale substrate topographic modification has recently been of significant interest in regenerative medicine. Many studies have utilized a polymer-demixing technique to produce nanotextured films and showed that cellular adhesion, proliferation, and differentiation could be regulated by the shape and scale of the polymer-demixed nanotopographies. However, little attention has been paid to the topographic fidelity of the polymer-demixed films when exposed to cell culture conditions. In this brief article, two polymer-demixing systems were employed to assess topographic changes in polymer-demixed films after fibronectin (FN) extracellular matrix protein adsorption and after incubation in phosphate-buffered saline at 37◦C. We showed that FN adsorption induced very small variations ( \u3c 2 nm) to the polystyrene/polybromostyrene (PS/PBrS)-demixed nanoisland textures, not substantially altering the nanotopographies given by the polymer demixing. In addition, poly(L-lactic acid)/PS (PLLA/PS)-demixed nanoisland topographies using PLLA with Mw = 50 x 103 did not show notable degradation up to day 24

Downstream and Intermediate Interactions of Synovial Sarcoma-Associated Fusion Oncoproteins and Their Implication for Targeted Therapy

Synovial sarcoma (SS), an aggressive type of soft tissue tumor, occurs mostly in adolescents and young adults. The origin and molecular mechanism of the development of SS remain only partially known. Over 90% of SS cases are characterized by the t(X;18)(p11.2;q11.2) translocation, which results mainly in the formation of SS18-SSX1 or SS18-SSX2 fusion genes. In recent years, several reports describing direct and indirect interactions of SS18-SSX1/SSX2 oncoproteins have been published. These reports suggest that the fusion proteins particularly affect the cell growth, cell proliferation, TP53 pathway, and chromatin remodeling mechanisms, contributing to SS oncogenesis. Additional research efforts are required to fully explore the protein-protein interactions of SS18-SSX oncoproteins and the pathways that are regulated by these partnerships for the development of effective targeted therapy

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„Genetyka i genomika zwierząt"Krystyna M. Charon, Marek Świtoński „Nowotwory przewodu pokarmowego”red. Ronald Fuchs, Dorothee Guggenberger, Ulf Neuman, Christian TrautweinRedakcja naukowa wydania polskiego: Wojciech Polkowski „Nowotwory złośliwe. Postępowanie wielodyscyplinarne:leczenie systemowe, chirurgia, radioterapia”Richard Pazdur, Lawrence D. Wagman, Kevin A. Camphausen, William J. HoskinsRedakcja naukowa wydania polskiego: Maciej Krzakowski i Andrzej Kaweck

LiveOcean: a daily forecast model of biogeochemistry in Washington marine waters

LiveOcean is a daily forecast model of ocean conditions for the coastal waters of Washington, Oregon, and Vancouver Island, as well as the Salish Sea. It is forced with realistic tides, winds, rivers, and ocean conditions. The model simulates biogeochemical properties including phytoplankton, nitrate, dissolved oxygen, dissolved inorganic carbon, and alkalinity, up to 3 days in the future. It is used for the prediction of ocean acidification events in coastal estuaries, and for harmful algal bloom events on coastal beaches. I will describe the model construction, comparisons with observations, uses, and future developments

Mechanism for export of sediment-derived iron in an upwelling regime

Author Posting. © American Geophysical Union, 2012. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Geophysical Research Letters 39 (2012): L03601, doi:10.1029/2011GL050366.Model simulations performed with a three-dimensional, high-resolution, process study ocean model of eastern boundary upwelling systems are used to describe a mechanism that efficiently transports sediment-derived dissolved iron offshore in the subsurface through the bottom boundary layer (BBL) during downwelling-favorable wind events. In the model, sediment-derived iron accumulates in the BBL on the outer shelf when the winds are upwelling-favorable. When the wind reverses, the iron-laden BBL is mixed into the water column and transported offshore along isopycnals that intersect the bottom. Depending on the frequency of wind reversal, between 10–50% of the shelf sediment-derived iron flux is exported offshore through this previously unidentified subsurface pathway. If this mechanism operates on all coastal upwelling regimes, the global export of sediment-derived iron to the open ocean would be equivalent to ten times larger than the estimated source of dissolved iron from aerosols.NSF supported this work.2012-08-1

Hairpin structure within the 3′UTR of DNA polymerase β mRNA acts as a post-transcriptional regulatory element and interacts with Hax-1

Aberrant expression of DNA polymerase β, a key enzyme involved in base excision repair, leads to genetic instability and carcinogenesis. Pol β expression has been previously shown to be regulated at the level of transcription, but there is also evidence of post-transcriptional regulation, since rat transcripts undergo alternative polyadenylation, and the resulting 3′UTR contain at least one regulatory element. Data presented here indicate that RNA of the short 3′UTR folds to form a strong secondary structure (hairpin). Its regulatory role was established utilizing a luciferase-based reporter system. Further studies led to the identification of a protein factor, which binds to this element—the anti-apoptotic, cytoskeleton-related protein Hax-1. The results of in vitro binding analysis indicate that the formation of the RNA–protein complex is significantly impaired by disruption of the hairpin motif. We demonstrate that Hax-1 binds to Pol β mRNA exclusively in the form of a dimer. Biochemical analysis revealed the presence of Hax-1 in mitochondria, but also in the nuclear matrix, which, along with its transcript-binding properties, suggests that Hax-1 plays a role in post-transcriptional regulation of expression of Pol β