Plastome organization and evolution of chloroplast genes in Cardamine species adapted to contrasting habitats

© 2015 Hu et al.; licensee BioMed Central. Background: Plastid genomes, also known as plastomes, are shaped by the selective forces acting on the fundamental cellular functions they code for and thus they are expected to preserve signatures of the adaptive path undertaken by different plant species during evolution. To identify molecular signatures of positive selection associated to adaptation to contrasting ecological niches, we sequenced with Solexa technology the plastomes of two congeneric Brassicaceae species with different habitat preference, Cardamine resedifolia and Cardamine impatiens. Results: Following in-depth characterization of plastome organization, repeat patterns and gene space, the comparison of the newly sequenced plastomes between each other and with 15 fully sequenced Brassicaceae plastomes publically available in GenBank uncovered dynamic variation of the IR boundaries in the Cardamine lineage. We further detected signatures of positive selection in ten of the 75 protein-coding genes of the examined plastomes, identifying a range of chloroplast functions putatively involved in adaptive processes within the family. For instance, the three residues found to be under positive selection in RUBISCO could possibly be involved in the modulation of RUBISCO aggregation/activation and enzymatic specificty in Brassicaceae. In addition, our results points to differential evolutionary rates in Cardamine plastomes. Conclusions: Overall our results support the existence of wider signatures of positive selection in the plastome of C. resedifolia, possibly as a consequence of adaptation to high altitude environments. We further provide a first characterization of the selective patterns shaping the Brassicaceae plastomes, which could help elucidate the driving forces underlying adaptation and evolution in this important plant family

An Exploration on Undertaking Commercial Projects in School-Enterprise Cooperation from the Perspective of Applied Talents Cultivation

With the vibrant growth of IT and strong encouragement from the "Internet Plus" policy, China's craving for high-end IT talents has been aroused to another high level. With norms in IT talents requirement become more diverse and demanding, IT talents are pushed to embody both solid theoretical software knowledge and high capability in practice. All of these make it an extremely urgent task for strengthening applied talents with their practice capability in commercial projects. This paper, based on cultivating applied talents and by exemplifying the applied IT major in one university in H province, reinforced educational and cultivating reform, explored the undertaking of commercial projects in school-enterprise cooperation and contemplated the mode construction of applied talents cultivation to raise the cultivation quality and employment of applied talents in universities, effectively enhance the commercial value of education as well as its capability in serving local economy and finally achieve the goal of intensifying the link of talents cultivation through practice.

Dentin Sialophosphoprotein: A Regulatory Protein for Dental Pulp Stem Cell Identity and Fate

The dentin sialophosphoprotein (dspp) transcript is expressed during tooth development as a DSPP precursor protein, which then undergoes cleavage to form mature dentin sialoprotein (DSP) and phosphophoryn (PP) proteins. Previous studies using DSPP-knockout (KO) mice have reported that these animals have hypomineralized teeth, thin dentin, and a large dental pulp chamber, similar to those from patients with dentinogenesis imperfecta III. However, there is no information about factors that regulate dental pulp stem cell lineage fate, a critical early event in the odontoblast-dentin mineralization scheme. To reveal the role of DSPP in odontoblast lineage differentiation during tooth development, we systematically examined teeth from wild-type (wt) and DSPP-KO C57BL/6 mice between the ages of postnatal day 1 and 3 months. We found developmental abnormalities not previously reported, such as circular dentin formation within dental pulp cells and altered odontoblast differentiation in DSPP-KO mice, even as early as 1 day after birth. Surprisingly, we also identified chondrocyte-like cells in the dental pulp from KO-mice teeth. Thus, these studies that compare wt and DSPP-KO mice suggest that the expression of DSPP precursor protein is required for normal odontoblast lineage differentiation and that the absence of DSPP allows dental pulp cells to differentiate into chondrocyte-like cells, which could negatively impact pulpal wound healing and tissue regeneration.Peer Reviewedhttps://deepblue.lib.umich.edu/bitstream/2027.42/140203/1/scd.2014.0066.pd

Inulin ameliorates metabolic syndrome in high-fat diet-fed mice by regulating gut microbiota and bile acid excretion

Background: Inulin is a natural plant extract that improves metabolic syndrome by modulating the gut microbiota. Changes in the gut microbiota may affect intestinal bile acids. We suggest that inulin may improve metabolism by inducing bile acid excretion by gut microbes.Methods: Male C57/BL mice were fed either a high-fat diet (60% calories) or a regular diet for 16 weeks, with oral inulin (10% w/w). At the end of the experiment, the gene expression levels (FGF15, CD36, Srebp-1c, FASN, and ACC) in the liver and intestines, as well as the serum levels of triglycerides (TGs), low-density lipoprotein (LDL) cholesterol, total cholesterol, and free fatty acids, were collected. The expression of FGF15 was examined using Western blot analysis. The fat distribution in the liver and groin was detected by oil red and hematoxylin and eosin staining. Simultaneously, the levels of serum inflammatory factors (alanine aminotransferase and aspartate aminotransferase) were detected to explore the side effects of inulin.Results: Inulin significantly improved glucose tolerance and insulin sensitivity, and decreased body weight and serum TG and LDL levels, in mice fed normal diet. Furthermore, inulin increased the α-diversity of the gut microbiota and increased the fecal bile acid and TG excretion in inulin-treated mice. In addition, inulin significantly reduced lipid accumulation in liver and inguinal fat, white fat weight, and hepatic steatosis. Western blot analysis showed that inulin reduced the expression of FGF15, a bile acid reabsorption protein.Conclusion: Inulin ameliorates the glucose and lipid metabolic phenotypes of mice fed a normal diet, including decreased intestinal lipid absorption, increased glucose tolerance, increased insulin sensitivity, and decreased body weight. These changes may be caused by an increase in bile acid excretion resulting from changes in the gut microbiota that affect intestinal lipid absorption

Plant biomass allocation and driving factors of grassland revegetation in a Qinghai-Tibetan Plateau chronosequence

Biomass allocation is a key factor in understanding how ecosystems respond to changing environmental conditions. The role of soil chemistry in the above- and belowground plant biomass allocation in restoring grassland is still incompletely characterized. Consequently, it has led to two competing hypotheses for biomass allocation: optimal partitioning, where the plants allocate biomass preferentially to optimize resource use; and the isometric hypothesis, which postulates that biomass allocation between roots and shoots is fixed. Here we tested these hypotheses over a chronosequence of alpine grasslandsion undergoing restoration in the Qinghai-Tibetan Plateau, these range from severely degraded to those with 18 years of revegetation with an intact grassland (as a reference). A high proportion of biomass was allocated to the roots in the revegetated grasslands, and more biomass to shoots in the degraded and intact grasslands. The grasslands gradually decreased their root to shoot ratio as revegetation continued, with the lowest value in year 18 of revegetation. Our results showed that aboveground biomass (AGB) was increased by available phosphorus (P), soil moisture, and negatively related to bulk density, while belowground biomass (BGB) was positively impacted by total P and negatively by nitrate nitrogen (N). The trade-off between them was positively associated with available P and nitrate-N, and soil nutrient availability is more linked to increased AGB relative to BGB. Our study indicates that biomass allocation is highly variable during the revegetation period from degraded grassland, and is linked with soil properties, thus supporting the optimal partitioning hypothesis.</p

Genome-wide comparative analysis of digital gene expression tag profiles during maize ear development

Background: Development of the maize (Zea mays L.) female inflorescence (ear) has an important impact on corn yield. However, the molecular mechanisms underlying maize ear development are poorly understood. Results: We profiled and analyzed gene expression of the maize ear at four developmental stages: elongation phase (I), spikelet differentiation phase (II), floret primordium differentiation phase (III), and floret organ differentiation phase (IV). Based on genome-wide profile analysis, we detected differential mRNA of maize genes. Among the ~6,800 differentially expressed genes (DEGs), 3,325 genes were differentially expressed in stage II, 3,765 genes in III, and 1,698 genes in IV, compared to its previous adjacent stages, respectively. Furthermore, some of DEGs were predicted to be potential candidates in maize ear development, such as AGAMOUS (GRMZM2G052890) and ATFP3 (GRMZM2G155281). Meanwhile, some genes were well-known annotated to the mutants during maize inflorescence development such as compact plant2 (ct2), zea AGAMOUS homolog1 (zag1), bearded ear (bde), and silky1 (si1). Some DEGs were predicted targets of microRNAs such as microRNA156. K-means clustering revealed that the DEGs showed 18 major expression patterns. Thirteen transcriptional factors from 10 families were differentially expressed across three comparisons of adjacent stages (II vs. I, III vs. II, IV vs. III). Antisense transcripts were widespread during all four stages, and might play important roles in maize ear development. Finally, we randomly selected 32 DEGs to validate their expression patterns using quantitative reverse-transcription polymerase chain reaction (qRT-PCR). The results were consistent with those from Solexa sequencing. Conclusions: DEGs technique had shown an advantage in detecting candidates, and some transcription factors during maize ear development. RT-PCR data were consistent with our sequencing data and supplied additional information on ear developmental processes. These results provide a molecular foundation for future research on maize ear development

Structural and magnetic phase diagram of CeFeAsO1-xFx and its relationship to high-temperature superconductivity

We use neutron scattering to study the structural and magnetic phase transitions in the iron pnictides CeFeAsO1-xFx as the system is tuned from a semimetal to a high-transition-temperature (high-Tc) superconductor through Fluorine (F) doping x. In the undoped state, CeFeAsO develops a structural lattice distortion followed by a stripe like commensurate antiferromagnetic order with decreasing temperature. With increasing Fluorine doping, the structural phase transition decreases gradually while the antiferromagnetic order is suppressed before the appearance of superconductivity, resulting an electronic phase diagram remarkably similar to that of the high-Tc copper oxides. Comparison of the structural evolution of CeFeAsO1-xFx with other Fe-based superconductors reveals that the effective electronic band width decreases systematically for materials with higher Tc. The results suggest that electron correlation effects are important for the mechanism of high-Tc superconductivity in these Fe pnictides.Comment: 19 pages, 5 figure