Fractionation of Hydrogen Isotopes by Sulfate- and Nitrate-Reducing Bacteria.

Hydrogen atoms from water and food are incorporated into biomass during cellular metabolism and biosynthesis, fractionating the isotopes of hydrogen-protium and deuterium-that are recorded in biomolecules. While these fractionations are often relatively constant in plants, large variations in the magnitude of fractionation are observed for many heterotrophic microbes utilizing different central metabolic pathways. The correlation between metabolism and lipid δ(2)H provides a potential basis for reconstructing environmental and ecological parameters, but the calibration dataset has thus far been limited mainly to aerobes. Here we report on the hydrogen isotopic fractionations of lipids produced by nitrate-respiring and sulfate-reducing bacteria. We observe only small differences in fractionation between oxygen- and nitrate-respiring growth conditions, with a typical pattern of variation between substrates that is broadly consistent with previously described trends. In contrast, fractionation by sulfate-reducing bacteria does not vary significantly between different substrates, even when autotrophic and heterotrophic growth conditions are compared. This result is in marked contrast to previously published observations and has significant implications for the interpretation of environmental hydrogen isotope data. We evaluate these trends in light of metabolic gene content of each strain, growth rate, and potential flux and reservoir-size effects of cellular hydrogen, but find no single variable that can account for the differences between nitrate- and sulfate-respiring bacteria. The emerging picture of bacterial hydrogen isotope fractionation is therefore more complex than the simple correspondence between δ(2)H and metabolic pathway previously understood from aerobes. Despite the complexity, the large signals and rich variability of observed lipid δ(2)H suggest much potential as an environmental recorder of metabolism

Transport Anomalies and Marginal Fermi-Liquid Effects at a Quantum Critical Point

The behavior of the conductivity and the density of states, as well as the phase relaxation time, of disordered itinerant electrons across a quantum ferromagnetic transition is discussed. It is shown that critical fluctuations lead to anomalies in the temperature and energy dependence of the conductivity and the tunneling density of states, respectively, that are stronger than the usual weak-localization anomalies in a disordered Fermi liquid. This can be used as an experimental probe of the quantum critical behavior. The energy dependence of the phase relaxation time at criticality is shown to be that of a marginal Fermi liquid.Comment: 4 pp., LaTeX, no figs., requires World Scientific style files (included), Contribution to MB1

Quantifying microbial utilization of petroleum hydrocarbons in salt-marsh sediments using the ^(13)C content of bacterial rRNA

Natural remediation of oil spills is catalyzed by complex microbial consortia. Here we take a whole-community approach to investigate bacterial incorporation of petroleum hydrocarbons from a simulated oil spill. We utilized the natural difference in carbon-isotopic abundance between a salt marsh ecosystem supported by the ^(13)C-enriched C4 grass, Spartina alterniflora, and the ^(13)C-depleted composition of petroleum to monitor changes in the ^(13)C content of biomass. Magnetic-bead capture methods for the selective recovery of bacterial RNA were used to monitor the ^(13)C content of bacterial biomass during a two-week experiment. The data show that by the end of the experiment, up to 26% of bacterial biomass derived from consumption of the freshly-spilled oil. The results contrast with the inertness of a nearby relict spill, which occurred in 1969 in West Falmouth, MA. Sequences of 16S rRNA genes from our experimental samples also were consistent with previous reports suggesting the importance of {gamma}- and {delta}-Proteobacteria and Firmicutes in the remineralization of hydrocarbons. The magnetic-bead capture approach makes it possible to quantify uptake of petroleum hydrocarbons by microbes in-situ. Although employed here at the Domain level, RNA-capture procedures can be highly specific. The same strategy could be used with genus-level specificity, something which is not currently possible using the ^(13)C content of biomarker lipids

Fabrication of submicrometer high refractive index tantalum pentoxide waveguides for optical propulsion of microparticles

Design, fabrication, and optimization of tantalum pentoxide (Ta2O5) waveguides to obtain low-loss guidance at a wavelength of 1070 nm are reported. The high-refractive index contrast (Δn ~ 0.65, compared to silicon oxide) of Ta2O5 allows strong confinement of light in waveguides of submicrometer thickness (200 nm), with enhanced intensity in the evanescent field. We have employed the strong evanescent field from the waveguide to propel micro-particles with higher velocity than previously reported. An optical propelling velocity of 50 µm/s was obtained for 8 µm polystyrene particles with guided power of only 20 mW

Incorporating Soil Surface Erosion Prediction into Forest Road Alignment Optimization

A previous study introduced a forest road design model developed to simultaneously optimize horizontal and vertical alignments of forest roads using a Tabu Search optimization technique and a high-resolution Digital Elevation Model (DEM). In this study, surface erosion prediction was incorporated into the road design model, so that users can optimize horizontal and vertical alignments of forest roads while constrained by maximum allowable sediment delivery from roads to streams. The road alignment optimization model was applied to a part of the Capitol State Forest in western Washington state. The application confirms the potential of the model to determine forest road alignments in a way to reduce total road costs as well as sediment delivery to streams. This paper also discusses the effects of DEM resolution on forest road alignment optimization. The accuracy of generating ground profile and forest road alignments depends on the resolution and accuracy of the DEM. The study results suggest that a 10-m grid DEM might be inappropriate to use for the purpose of road design and alignment optimization due to the lower accuracy in its elevation representation

Verifying Heap-Manipulating Programs with Unknown Procedure Calls

10.1007/978-3-642-16901-4_13Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)6447 LNCS171-18