Evolution of Interferons and Interferon Receptors

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Selenium Supplementation in Fish : A Combined Chemical and Biomolecular Study to Understand Sel-Plex Assimilation and Impact on Selenoproteome Expression in Rainbow Trout (Oncorhynchus mykiss)

Correction Published: February 10, 2016 Acknowledgements This study was supported by Alltech (ZY002 RGF0258) and the Principal’s Interdisciplinary Fund at the University of Aberdeen (award BL900.ROQ0061). Thanks go to the Hellenic Centre for Marine Research, which synthesized all the diets used in this experiment. D.P. carried out the experiment and performed all the molecular biology analysis, interpreted the results and drafted the manuscript. C.J.S and S.A.M.M. supervised the experiment, participating in the experimental design and revision of the manuscript. M.M.L. participated in the sampling and performed all the chemical analysis under the supervision of J.F. Pacitti D, Lawan MM, Sweetman J, Martin SAM, Feldmann J, Secombes CJ (2016) Correction: Selenium Supplementation in Fish: A Combined Chemical and Biomolecular Study to Understand Sel-Plex Assimilation and Impact on Selenoproteome Expression in Rainbow Trout (Oncorhynchus mykiss). PLoS ONE 11(2): e0144681. doi:10.1371/journal.pone.0144681 The unit used to indicate Selenium concentration appears incorrectly throughout the manuscript. The correct unit is mg Kg-1. The values for Selenium concentrations provided as 0.5, 4, and 8 mg Kg-1 throughout the article are incorrect. The correct Selenium concentrations are 0.25, 2, and 4 mg Kg-1 respectively.Peer reviewedPublisher PD

Four selenoprotein P genes exist in salmonids : Analysis of their origin and expression following Se supplementation and bacterial infection

Acknowledgements: This research was funded by Alltech. We thank Dr. Jun Zou (Shanghai Ocean University) for the provision of the recombinant proteins and PAMPS used in this study. Data Availability: All cloned sequences as reported in this study were submitted to the GenBank database at https://www.ncbi.nlm.nih.gov/genbank/ (accession number(s) MH085053-MH085057). Funding: M.A.N.P. received funding of his PhD studies by Alltech (https://www.alltech.com/) under the grant code rg13398-10. The research yielded this manuscript. The authors can confirm the funder provided support in the form of a studentship for author M.A.N.P. and salaries for JS but did not have any additional role in the study design, data collection and analysis, decision to publish, or preparation of the manuscript.Peer reviewedPublisher PD

An insight into piscidins : The discovery, modulation and bioactivity of greater amberjack, Seriola dumerili, piscidin

This project has received funding from the European Union’s Seventh Framework Programme for research, technological development and demonstration (KBBE-2013-07 single stage, GA 603121, DIVERSIFY).Peer reviewedPostprin

Increased parasite resistance of greater amberjack (Serbia dumerili Risso 1810) juveniles fed a cMOS supplemented diet is associated with upregulation of a discrete set of immune genes in mucosal tissues

This work has been cofinanced by the “Agencia Canaria de investigación, Innovación y Sociedad de la Información de la Consejería de Economía, Industria, Comercio y Conocimiento” and the European social funding, “Programa Operativo Integrado de Canarias 2014-2020”, as funding for the PhD grant of AFM. This project also received funding from the European Union Seventh Framework Programme for research, technological development and demonstration (KBBE-2013-07 single stage, GA 603121, DIVERSIFY).Peer reviewedPostprin

Differential responses of the gut transcriptome to plant protein diets in farmed Atlantic salmon

Background The potential for alternative plant protein sources to replace limited marine ingredients in fish feeds is important for the future of the fish farming industry. However, plant ingredients in fish feeds contain antinutritional factors (ANFs) that can promote gut inflammation (enteritis) and compromise fish health. It is unknown whether enteritis induced by plant materials with notable differences in secondary metabolism is characterised by common or distinct gene expression patterns, and how using feeds with single vs mixed plant proteins may affect the gut transcriptome and fish performance. We used Atlantic salmon parr to investigate the transcriptome responses of distal gut to varying dietary levels (0-45%) of soy protein concentrate (SPC) and faba bean (Vicia faba) protein concentrate (BPC) following an 8-week feeding trial. Soybean meal (SBM) and fish meal (FM) were used as positive and negative controls for enteritis, respectively. Gene expression profiling was performed using a microarray platform developed and validated for Atlantic salmon.  Results Different plant protein materials (SPC, BPC and SBM) generated substantially different gut gene expression profiles, with relatively few transcriptomic alterations (genes, pathways and GO terms) common for all plant proteins used. When SPC and BPC were simultaneously included in the diet, they induced less extensive alterations of gut transcriptome than diets with either SPC or BPC singly, probably due to reduced levels of individual ANFs. The mixed plant protein diets were also associated with improved body composition of fish relative to the single plant protein diets, which may provide evidence for a link between the magnitude of changes in gut transcriptome and whole-animal performance.  Conclusions Our results indicate that gut transcriptomic profiling provides a useful tool for testing the applicability of alternative protein sources for aquaculture feeds and designing diets with reduced impact of ANFs on fish health. Ultimately, understanding diet-gut interactions and intestinal homeostasis in farmed fish is important to maximise performance and to ensure that aquaculture continues to be a sustainable source of food for a growing world population

A description of the origins, design and performance of the TRAITS-SGP Atlantic salmon Salmo salar L. cDNA microarray

The origins, design, fabrication and performance of an Atlantic salmon microarray are described. The microarray comprises 16 950 Atlantic salmon-derived cDNA features, printed in duplicate and mostly sourced from pre-existing expressed sequence tag (EST) collections [SALGENE and salmon genome project (SGP)] but also supplemented with cDNAs from suppression subtractive hybridization libraries and candidate genes involved in immune response, protein catabolism, lipid metabolism and the parr–smolt transformation. A preliminary analysis of a dietary lipid experiment identified a number of genes known to be involved in lipid metabolism. Significant fold change differences (as low as 1.2x) were apparent from the microarray analysis and were confirmed by quantitative real-time polymerase chain reaction analysis. The study also highlighted the potential for obtaining artefactual expression patterns as a result of cross-hybridization of similar transcripts. Examination of the robustness and sensitivity of the experimental design employed demonstrated the greater importance of biological replication over technical (dye flip) replication for identification of a limited number of key genes in the studied system. The TRAITS (TRanscriptome Analysis of Important Traits of Salmon)–salmon genome project microarray has been proven, in a number of studies, to be a powerful tool for the study of key traits of Atlantic salmon biology. It is now available for use by researchers in the wider scientific community

Correction: Selenium Supplementation in Fish: A Combined Chemical and Biomolecular Study to Understand Sel-Plex Assimilation and Impact on Selenoproteome Expression in Rainbow Trout (Oncorhynchus mykiss).

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