Reduction of time-resolved space-based CCD photometry developed for MOST Fabry Imaging data

The MOST (Microvariability & Oscillations of STars) satellite obtains ultraprecise photometry from space with high sampling rates and duty cycles. Astronomical photometry or imaging missions in low Earth orbits, like MOST, are especially sensitive to scattered light from Earthshine, and all these missions have a common need to extract target information from voluminous data cubes. They consist of upwards of hundreds of thousands of two-dimensional CCD frames (or sub-rasters) containing from hundreds to millions of pixels each, where the target information, superposed on background and instrumental effects, is contained only in a subset of pixels (Fabry Images, defocussed images, mini-spectra). We describe a novel reduction technique for such data cubes: resolving linear correlations of target and background pixel intensities. This stepwise multiple linear regression removes only those target variations which are also detected in the background. The advantage of regression analysis versus background subtraction is the appropriate scaling, taking into account that the amount of contamination may differ from pixel to pixel. The multivariate solution for all pairs of target/background pixels is minimally invasive of the raw photometry while being very effective in reducing contamination due to, e.g., stray light. The technique is tested and demonstrated with both simulated oscillation signals and real MOST photometry.Comment: 16 pages, 23 figure

The host galaxies of three radio-loud quasars: 3C 48, 3C 345, and B2 1425+267

Observations with the Wide-Field/Planetary Camera-2 of the Hubble Space Telescope (HST) are presented for three radio-loud quasars: 3C 48 (z=0.367), B2 1425+267 (z=0.366), and 3C 345 (z=0.594). All three quasars have luminous (~4 L^*) galaxies as hosts, which are either elliptical (B2 1425+267 and 3C 345) or interacting (3C 48), and all hosts are 0.5 - 1.0 mag bluer in (V-I) than other galaxies with the same overall morphology at similar redshifts to the quasars. The host of 3C 48 has many H II regions and a very extended tidal tail. All nine of the radio-loud quasars studied here and in Bahcall et al. (1997) either have bright elliptical hosts or occur in interacting systems. There is a robust correlation between the radio emission of the quasar and the luminosity of host galaxy; the radio-loud quasars reside in galaxies that are on average about 1 mag brighter than hosts of the radio-quiet quasars.Comment: Accepted for publication in ApJ. 3 postscript and 3 jpeg figures. Original figures may be found in ftp://eku.sns.ias.edu/pub/sofia/RadioLoud

Von-Hippel-Lindau-Gen-Mutationstypen: Assoziation mit Genexpressionssignaturen in klarzelligen Nierenzellkarzinomen

Zusammenfassung: Fragestellung: Der Von-Hippel-Lindau- (VHL-)Tumorsuppressor ist ein multifunktionelles Protein. VHL-Mutationen treten häufig auf im klarzelligen Nierenzellkarzinom (kNZK). Verschiedene Mutationstypen führen vermutlich zu spezifischen pVHL-Funktionsveränderungen, die wiederum einen signifikanten Einfluss auf die Genexpression und schließlich auf den Krankheitsverlauf haben dürften. Ziel der vorliegenden Studie ist die Korrelation von Genexpressionssignaturen mit spezifischen VHL-Mutationstypen im kNZK. Methodik: Transkriptomanalyse wurde für 94 kNZK und 21 papilläre NZK (pNZK) mittels Affymetrix HG U133A Genchips durchgeführt. Alle 94 kNZK wurden auf VHL-Mutationen analysiert. Ergebnisse: Ein "hierarchical clustering" anhand der zwischen kNZK und pNZK differenziell regulierten Gene zeigt eine deutliche Stratifizierung der beiden histologischen Subtypen. 186 Gene wurden zwischen VHL-Wildtyp kNZK und kNZK mit mutiertem VHL-Gen differenziell exprimiert. Schlussfolgerung: Unsere Resultate weisen auf eine signifikante Auswirkung von VHL-Mutationen auf die Genexpression im NZK hi

Next Generation Sequencing of Reactive Stroma and Residual Breast Cancer Cells in Tumor Bed after Neoadjuvant Chemotherapy

Primary systemic or neoadjuvant chemotherapy of breast cancer has become a standard therapy option in locally advanced or predefined intrinsic subtypes such as triple negative or Her2 positive breast cancer. Neoadjuvant chemotherapy can result in complete pathological response without residual tumor cells (tumor bed) or partial response and non-response with different amounts of reactive stroma and residual tumor cells. The interaction between therapy regimens and tumoral driver mutations have been extensively studied, although the reactive stroma of the tumor bed received less attention. In this study, we characterized the mutational status of residual breast cancer cells and reactive tumor stroma devoid of residual tumor cells in partial or non-responders using next generation sequencing. Twenty-one post-therapeutic breast surgical specimens after neoadjuvant chemotherapy underwent pathogenic driver-mutation screening using microdissected residual breast cancer cells and in reactive stroma adjacent to tumor bed areas. In reactive stroma, no mutations could be validated. In residual breast cancer cells, mutations were detected in sixteen of twenty-one cases (76%). In nine of these twenty-one cases (43%), pathogenic driver mutations (PIK3CA, PTEN, TP53, FN1, PLAG1) were identified. Pathogenic driver-mutations are exclusively restricted to residual carcinoma cells and are absent in reactive stroma independently from intrinsic breast cancer subtypes or tumor stage. These data suggest that the absence of pathogenic mutations in a tumor bed without residual tumor cells may have prognostic implications after neoadjuvant chemotherapy

Computers and Electronics in Agriculture / Towards the applicability of biometric wood log traceability using digital log end images

Log traceability in the timber based industries is a basic requirement to fulfil economical, social and legal requirements. This work introduces biometric log recognition using digital log end images and explores the robustness to a set of log end cross-section (CS) variations. In order to investigate longitudinal and surface CS variations three tree logs were sliced and captured in different sessions. A texture feature-based technique well known from fingerprint recognition is adopted to compute and match biometric templates of CS images captured from log ends. In the experimental evaluation insights and constraints on the general applicability and robustness of log end biometrics to identify logs in an industrial application are presented. Results for different identification performance scenarios indicate that the matching procedure which is based on annual ring pattern and shape information is very robust to log length cutting using different cutting tools. The findings of this study are a further step towards the development of a biometric log recognition system.(VLID)223160

VLBI study of maser kinematics in high-mass SFRs. II. G23.01-0.41

The present paper focuses on the high-mass star-forming region G23.01-0.41. Methods: Using the VLBA and the EVN arrays, we conducted phase-referenced observations of the three most powerful maser species in G23.01-0.41: H2O at 22.2 GHz (4 epochs), CH3OH at 6.7 GHz (3 epochs), and OH at 1.665 GHz (1 epoch). In addition, we performed high-resolution (> 0".1), high-sensitivity (< 0.1 mJy) VLA observations of the radio continuum emission from the HMC at 1.3 and 3.6 cm. Results: We have detected H2O, CH3OH, and OH maser emission clustered within 2000 AU from the center of a flattened HMC, oriented SE-NW, from which emerges a massive 12CO outflow, elongated NE-SW, extended up to the pc-scale. Although the three maser species show a clearly different spatial and velocity distribution and sample distinct environments around the massive YSO, the spatial symmetry and velocity field of each maser specie can be explained in terms of expansion from a common center, which possibly denotes the position of the YSO driving the maser motion. Water masers trace both a fast shock (up to 50 km/s) closer to the YSO, powered by a wide-angle wind, and a slower (20 km/s) bipolar jet, at the base of the large-scale outflow. Since the compact free-free emission is found offset from the putative location of the YSO along a direction consistent with that of the maser jet axis, we interpret the radio continuum in terms of a thermal jet. The velocity field of methanol masers can be explained in terms of a composition of slow (4 km/s in amplitude) motions of radial expansion and rotation about an axis approximately parallel to the maser jet. Finally, the distribution of line of sight velocities of the hydroxyl masers suggests that they can trace gas less dense (n(H2) < 10^6 cm^-3) and more distant from the YSO than that traced by the water and methanol masers, which is expanding toward the observer. (Abridged)Comment: 23 pages, 8 figures, 4 tables, accepted by Astronomy and Astrophysic

An interleukin-1 polymorphism additionally intensified by atopy as prognostic factor for aseptic non-mechanical complications in metal knee and hip arthroplasty

Background: In contrast to infection or mechanical issues joint replacement failure following inflammatory adverse reactions is poorly understood. Objective: To assess the association of IL-1β polymorphisms and history of allergy with aseptic non-mechanical complications following arthroplasty. Methods: In 102 patients with aseptic non-mechanically caused symptomatic knee or hip arthroplasty (SA) and 93 patients with asymptomatic arthroplasty (AA) questionnaire-based history, patch test with at least standard series, lymphocyte transformation test (LTT) with nickel, cobalt and chromium and interleukin-1 polymorphism analysis were done. Three polymorphisms of the IL1B gene [IL-1b -3954 (rs1143634), IL-1b -511 (rs16944) and IL-1b -31 (rs1143627)] and one polymorphism of the IL1RN gene [IL1RN intron 2, variable number of tandem repeats, VNTR (rs2234663)] were assessed by PCR and gel electrophoresis. Results: We found no significant difference in smoking history and atopy but 25% versus 10% of self-reported metal allergy in SA versus AA; the patch test (respective, LTT) for metal sensitivity was more often positive in SA patients. The allele 498 bp of the IL1RN polymorphism occurred significantly more often in the SA group (37% versus 11%; p < 0.0001). Upon additional presence of atopy, the difference was even greater (60% vs 10%) (p < 0.000001). There was no association of IL-1 polymorphisms with metal allergy. Conclusion: The IL1RN VNTR allele 498 bp was strongly associated with SA. In patients with a history of atopy, presence of the IL1RN VNTR allele 498 bp led to a four-fold higher SA prevalence compared to patients without this allele