Riparian trees as common denominators across the river flow spectrum: are ecophysiological methods useful tools in environmental flow assessments?

Riparian tree species, growing under different conditions of water availability, can adapt their physiology to maximise their survival chances. Rivers in South Africa may flow perennially, seasonally or ephemerally (episodically). Different riparian species are adapted to survive under each of these different flow regimes by making use of surface, ground, soil, rainwater, or some combination of these. These water sources are available to varying degrees, depending on local climatic, hydrological, geohydrological and geomorphological conditions. This paper tests physiological differences among trees along rivers with varying flow regimes. In this study 3 parameters were selected and tested, namely wood density, specific leaf area and water use efficiency through stable carbon isotope measurements. All three parameters are quick, simple and cheap to determine and as such their value for standard-procedure river monitoring programmes or environmental flow requirement procedures was tested. Acacia erioloba is an arid-adapted riparian tree along the ephemeral Kuiseb (Namibia) and Kuruman (South Africa) Rivers that shows decreasing specific leaf area and increasing wood density correlating with deeper groundwater levels. Intraspecific changes for specific leaf area and carbon isotope values were demonstrated for Acacia mellifera and Croton gratissimus at varying distances from the active channel of the seasonal Mokolo River (South Africa). No significant differences in physiology were noted for Salix mucronata, Brabejum stellatifolium and Metrosideros angustifolia, growing along the perennial Molenaars and Sanddrifskloof Rivers (South Africa) under reduced flow conditions. Only the measurement of specific leaf area recurrently showed that significant physiological differences for trees occurred along rivers of the drier flow regime spectrum (seasonal and ephemeral). As such, this physiological measurement may be a valuable indicator for water stress, while the other measurements might provide more conclusive results if a larger sampling size were used. Specific leaf area, in conjunction with other carefully picked water stress measurement methods, could be considered for monitoring programmes during environmental flow assessments, river health monitoring exercises and restoration projects. This would be particularly valuable in rivers without permanent flow, where there is little species-specific knowledge and where current monitoring methods are unsuited.Keywords: ecophysiology, stable δ13C isotopes, wood density, specific leaf area, EFAs, river flow regimes, tree

Health risk implications from simultaneous exposure to multiple environmental contaminants

Water quality has deteriorated in the upper Olifants River system, South Africa, as a result of land use activities which include mining, agriculture and industries. A health risk assessment was conducted from 2009 to 2011 in the catchment to determine the possible risks local communities face from various pollutants such as microbials, heavy metals and oestrogen in the river water and vegetation. Aluminium and manganese accumulated in plants and vanadium and aluminium concentrations found in selective water samples posed significant health risks when consumed. A quantitative microbial risk assessment revealed that the combined risk of infection ranged from 1 to 26 percent with the Norovirus posing the overall greatest health risk. The anticipated disability adjusted life years resulting from drinking untreated water from these sites are in the order of 10,000 times greater than what is considered acceptable. The oestradiol activity, caused by endocrine disrupting compounds in the water, measured above the trigger value of 0.7 ng L−1. Impoverished communities in the area, who partially depend on river water for potable and domestic use, are exposed to immune-compromising metals that increase their probability of infection from waterborne diseases caused by the excess microbial pathogens in the contaminated surface water.Olifants River Forumhttp://www.elsevier.com/locate/ecoenvhb201

A Genetic Porcine Model of Cancer

The large size of the pig and its similarity in anatomy, physiology, metabolism, and genetics to humans make it an ideal platform to develop a genetically defined, large animal model of cancer. To this end, we created a transgenic oncopig line encoding Cre recombinase inducible porcine transgenes encoding KRASG12D and TP53R167H, which represent a commonly mutated oncogene and tumor suppressor in human cancers, respectively. Treatment of cells derived from these oncopigs with the adenovirus encoding Cre (AdCre) led to KRASG12D and TP53R167H expression, which rendered the cells transformed in culture and tumorigenic when engrafted into immunocompromised mice. Finally, injection of AdCre directly into these oncopigs led to the rapid and reproducible tumor development of mesenchymal origin. Transgenic animals receiving AdGFP (green fluorescent protein) did not have any tumor mass formation or altered histopathology. This oncopig line could thus serve as a genetically malleable model for potentially a wide spectrum of cancers, while controlling for temporal or spatial genesis, which should prove invaluable to studies previously hampered by the lack of a large animal model of cancer

Electrothermal soft manipulator enabling safe transport and handling of thin cell/tissue sheets and bioelectronic devices

“Living” cell sheets or bioelectronic chips have great potentials to improve the quality of diagnostics and therapies. However, handling these thin and delicate materials remains a grand challenge because the external force applied for gripping and releasing can easily deform or damage the materials. This study presents a soft manipulator that can manipulate and transport cell/tissue sheets and ultrathin wearable biosensing devices seamlessly by recapitulating how a cephalopod’s suction cup works. The soft manipulator consists of an ultrafast thermo-responsive, microchanneled hydrogel layer with tissue-like softness and an electric heater layer. The electric current to the manipulator drives microchannels of the gel to shrink/expand and results in a pressure change through the microchannels. The manipulator can lift/detach an object within 10 s and can be used repeatedly over 50 times. This soft manipulator would be highly useful for safe and reliable assembly and implantation of therapeutic cell/tissue sheets and biosensing devices

Universal DNA methylation age across mammalian tissues

Aging, often considered a result of random cellular damage, can be accurately estimated using DNA methylation profiles, the foundation of pan-tissue epigenetic clocks. Here, we demonstrate the development of universal pan-mammalian clocks, using 11,754 methylation arrays from our Mammalian Methylation Consortium, which encompass 59 tissue types across 185 mammalian species. These predictive models estimate mammalian tissue age with high accuracy (r > 0.96). Age deviations correlate with human mortality risk, mouse somatotropic axis mutations and caloric restriction. We identified specific cytosines with methylation levels that change with age across numerous species. These sites, highly enriched in polycomb repressive complex 2-binding locations, are near genes implicated in mammalian development, cancer, obesity and longevity. Our findings offer new evidence suggesting that aging is evolutionarily conserved and intertwined with developmental processes across all mammals.Publisher PDFPeer reviewe

Universal DNA methylation age across mammalian tissues.

Aging, often considered a result of random cellular damage, can be accurately estimated using DNA methylation profiles, the foundation of pan-tissue epigenetic clocks. Here, we demonstrate the development of universal pan-mammalian clocks, using 11,754 methylation arrays from our Mammalian Methylation Consortium, which encompass 59 tissue types across 185 mammalian species. These predictive models estimate mammalian tissue age with high accuracy (r > 0.96). Age deviations correlate with human mortality risk, mouse somatotropic axis mutations and caloric restriction. We identified specific cytosines with methylation levels that change with age across numerous species. These sites, highly enriched in polycomb repressive complex 2-binding locations, are near genes implicated in mammalian development, cancer, obesity and longevity. Our findings offer new evidence suggesting that aging is evolutionarily conserved and intertwined with developmental processes across all mammals

Evolutionary signals of selection on cognition from the great tit genome and methylome

For over 50 years, the great tit (Parus major) has been a model species for research in evolutionary, ecological and behavioural research; in particular, learning and cognition have been intensively studied. Here, to provide further insight into the molecular mechanisms behind these important traits, we de novo assemble a great tit reference genome and whole-genome re-sequence another 29 individuals from across Europe. We show an overrepresentation of genes related to neuronal functions, learning and cognition in regions under positive selection, as well as increased CpG methylation in these regions. In addition, great tit neuronal non-CpG methylation patterns are very similar to those observed in mammals, suggesting a universal role in neuronal epigenetic regulation which can affect learning-, memory- and experience-induced plasticity. The high-quality great tit genome assembly will play an instrumental role in furthering the integration of ecological, evolutionary, behavioural and genomic approaches in this model species.</p

Analyses of pig genomes provide insight into porcine demography and evolution

For 10,000 years pigs and humans have shared a close and complex relationship. From domestication to modern breeding practices, humans have shaped the genomes of domestic pigs. Here we present the assembly and analysis of the genome sequence of a female domestic Duroc pig (Sus scrofa) and a comparison with the genomes of wild and domestic pigs from Europe and Asia. Wild pigs emerged in South East Asia and subsequently spread across Eurasia. Our results reveal a deep phylogenetic split between European and Asian wild boars ∼1 million years ago, and a selective sweep analysis indicates selection on genes involved in RNA processing and regulation. Genes associated with immune response and olfaction exhibit fast evolution. Pigs have the largest repertoire of functional olfactory receptor genes, reflecting the importance of smell in this scavenging animal. The pig genome sequence provides an important resource for further improvements of this important livestock species, and our identification of many putative disease-causing variants extends the potential of the pig as a biomedical model

Groundwater quality monitoring around Bass Lake, Betty's Bay, South Africa

The study involves the analysis of groundwater around Bass Lake, part of a fragile black water lake system situated along a narrow coastal plain in the southern Cape, in order to establish the quality of the water and to identify the sources of pollution. The study was conducted in 1998 during the winter season in which water samples were taken from Bass Lake and from eight well-points surrounding the lake. The samples were analysed for traces of faecal pollution, nutrient concentrations, pH and conductivity. The results of these tests showed that the water is relatively uncontaminated during the winter season. Only slight contamination was found at one sampling site. However there was enough secondary evidence to suggest that the lake had being reasonably polluted at various times of the year. This evidence was in the form of medical reports, changes in the natural vegetation and incidences of algal blooms. It is expected that significant contamination only occurs during the summer time, when the visitor occupancy rate in the surrounding houses is high and consequently there is an increase in the volume of waste water and sewage received by domestic sewage systems. The study suggests that water monitoring methodology used in this study should yield better results during the drier summer period when there is decrease in the rate of groundwater flow and a lower water table. Monitoring throughout the year is recommended. Keywords: groundwater quality; septic tanks; sewage pollution (Afr J Aqua Sci: 2000 25(1)