Super-Fast MST Algorithms in the Congested Clique Using o(m) Messages

In a sequence of recent results (PODC 2015 and PODC 2016), the running time of the fastest algorithm for the minimum spanning tree (MST) problem in the Congested Clique model was first improved to O(log(log(log(n)))) from O(log(log(n))) (Hegeman et al., PODC 2015) and then to O(log^*(n)) (Ghaffari and Parter, PODC 2016). All of these algorithms use Theta(n^2) messages independent of the number of edges in the input graph. This paper positively answers a question raised in Hegeman et al., and presents the first "super-fast" MST algorithm with o(m) message complexity for input graphs with m edges. Specifically, we present an algorithm running in O(log^*(n)) rounds, with message complexity ~O(sqrt{m * n}) and then build on this algorithm to derive a family of algorithms, containing for any epsilon, 0 < epsilon <= 1, an algorithm running in O(log^*(n)/epsilon) rounds, using ~O(n^{1 + epsilon}/epsilon) messages. Setting epsilon = log(log(n))/log(n) leads to the first sub-logarithmic round Congested Clique MST algorithm that uses only ~O(n) messages. Our primary tools in achieving these results are (i) a component-wise bound on the number of candidates for MST edges, extending the sampling lemma of Karger, Klein, and Tarjan (Karger, Klein, and Tarjan, JACM 1995) and (ii) Theta(log(n))-wise-independent linear graph sketches (Cormode and Firmani, Dist. Par. Databases, 2014) for generating MST candidate edges

Using graph partitioning for scalable distributed quantum molecular dynamics

The simulation of the physical movement of multi-body systems at an atomistic level, with forces calculated from a quantum mechanical description of the electrons, motivates a graph partitioning problem studied in this article. Several advanced algorithms relying on evaluations of matrix polynomials have been published in the literature for such simulations. We aim to use a special type of graph partitioning to efficiently parallelize these computations. For this, we create a graph representing the zero–nonzero structure of a thresholded density matrix, and partition that graph into several components. Each separate submatrix (corresponding to each subgraph) is then substituted into the matrix polynomial, and the result for the full matrix polynomial is reassembled at the end from the individual polynomials. This paper starts by introducing a rigorous definition as well as a mathematical justification of this partitioning problem. We assess the performance of several methods to compute graph partitions with respect to both the quality of the partitioning and their runtime

Graph Partitioning Methods for Fast Parallel Quantum Molecular Dynamics

We study a graph partitioning problem motivated by the simulation of the physical movement of multi-body systems on an atomistic level, where the forces are calculated from a quantum mechanical description of the electrons. Several advanced algorithms have been published in the literature for such simulations that are based on evaluations of matrix polynomials. We aim at efficiently parallelizing these computations by using a special type of graph partitioning. For this, we represent the zero-nonzero structure of a thresholded matrix as a graph and partition that graph into several components. The matrix polynomial is then evaluated for each separate submatrix corresponding to the subgraphs and the evaluated submatrix polynomials are used to assemble the final result for the full matrix polynomial. The paper provides a rigorous definition as well as a mathematical justification of this partitioning problem. We use several algorithms to compute graph partitions and experimentally evaluate their performance with respect to the quality of the partition obtained with each method and the time needed to produce it