Two Genetic Determinants Acquired Late in Mus Evolution Regulate the Inclusion of Exon 5, which Alters Mouse APOBEC3 Translation Efficiency

Mouse apolipoprotein B mRNA-editing enzyme catalytic polypeptide-like editing complex 3 (mA3), an intracellular antiviral factor, has 2 allelic variations that are linked with different susceptibilities to beta- and gammaretrovirus infections among various mouse strains. In virus-resistant C57BL/6 (B6) mice, mA3 transcripts are more abundant than those in susceptible BALB/c mice both in the spleen and bone marrow. These strains of mice also express mA3 transcripts with different splicing patterns: B6 mice preferentially express exon 5-deficient (Δ5) mA3 mRNA, while BALB/c mice produce exon 5-containing full-length mA3 mRNA as the major transcript. Although the protein product of the Δ5 mRNA exerts stronger antiretroviral activities than the full-length protein, how exon 5 affects mA3 antiviral activity, as well as the genetic mechanisms regulating exon 5 inclusion into the mA3 transcripts, remains largely uncharacterized. Here we show that mA3 exon 5 is indeed a functional element that influences protein synthesis at a post-transcriptional level. We further employed in vitro splicing assays using genomic DNA clones to identify two critical polymorphisms affecting the inclusion of exon 5 into mA3 transcripts: the number of TCCT repeats upstream of exon 5 and the single nucleotide polymorphism within exon 5 located 12 bases upstream of the exon 5/intron 5 boundary. Distribution of the above polymorphisms among different Mus species indicates that the inclusion of exon 5 into mA3 mRNA is a relatively recent event in the evolution of mice. The widespread geographic distribution of this exon 5-including genetic variant suggests that in some Mus populations the cost of maintaining an effective but mutagenic enzyme may outweigh its antiviral function

Process of converting starch to glucose and glucose to lactic acid

This document describes a method for converting starch into lactic acid of sufficient purity for use as a substrate for biodegradable plastics. The process is designed to work on industrial food waste streams such as potato wastes or cheese whey permeate. For potato waste, {alpha}-amylase and calcium chloride are added to the starch containing waste and incubated at a pH of 4--7, a temperature of 90--130{degree}C, and a pressure above 15 psi for not less than 15 minutes. At this point, glucoamylase is added and the mixture is incubated at a temperature of 50--70{degree}C and a pH below 6.5 for 4 hours. This results in the conversion of more than 90% of the starch into glucose, which is substantially free of microbial contamination. The hydrolysate is filtered, and introduced with additional nutrients to a fermentor containing a lactose producing microorganism to form a fermentation broth. This results in the fermentation of glucose to lactose, which is filtered and subjected to electrodialysis for purification. Conversion of glucose to lactic acid or lactate occurs with an efficiency of over 95%. 1 fig. (MHB

Process of converting starch to glucose and glucose to lactic acid

This document describes a method for converting starch into lactic acid of sufficient purity for use as a substrate for biodegradable plastics. The process is designed to work on industrial food waste streams such as potato wastes or cheese whey permeate. For potato waste, {alpha}-amylase and calcium chloride are added to the starch containing waste and incubated at a pH of 4--7, a temperature of 90--130{degree}C, and a pressure above 15 psi for not less than 15 minutes. At this point, glucoamylase is added and the mixture is incubated at a temperature of 50--70{degree}C and a pH below 6.5 for 4 hours. This results in the conversion of more than 90% of the starch into glucose, which is substantially free of microbial contamination. The hydrolysate is filtered, and introduced with additional nutrients to a fermentor containing a lactose producing microorganism to form a fermentation broth. This results in the fermentation of glucose to lactose, which is filtered and subjected to electrodialysis for purification. Conversion of glucose to lactic acid or lactate occurs with an efficiency of over 95%. 1 fig. (MHB

DFT+U Calculations and XAS Study: Further Confirmation of the Presence of CoO 5

International audienceLiCoO2, one of the major positive electrode materials for Li-ion batteries, can be synthesized with excess Li. Previous experimental work suggested the existence of intermediate spin (IS) Co3+ ions in square-based pyramids to account for the defect in this material. We present here a theoretical study based on density functional theory (DFT) calculations together with an X-ray absorption spectroscopy (XAS) experimental study. In the theoretical study, a hypothetical Li4Co2O5 material, where all the Co ions are in pyramids, was initially considered as a model material. Using DFT+U, the intermediate spin state of the Co3+ ions is found stable for U values around 1.5 eV. The crystal and electronic structures are studied in detail, showing that the defect must actually be considered as a pair of such square-based pyramids, and that Co-Co bonding can explain the position of Co in the basal plane. Using a supercell corresponding to more diluted defects (as in the actual material), the calculations show that the IS state is also stabilized. In order to investigate experimentally the change in the electronic structure in the Li-overstoichiometric LiCoO2, we used X-ray absorption near edge structure (XANES) spectroscopy and propose an interpretation of the O Kedge spectra based on the DFT+U calculations, that fully supports the presence of pairs of intermediate spin state Co3+ defects in Li-overstoichiometric LiCoO2

Development of classical molecule-surface interaction potentials based on density functional theory calculations : investigation of force field representability

A simple classical force field, based only on Coulomb and Lennard-Jones potentials, was developed to describe the interaction of an ethanol molecule physisorbed on the a-alumina (0001) surface. A range of adsorption structures were calculated using density functional theory (DFT) and these results were used for the force field parametrization. This system has a very inhomogeneous adsorption energy landscape, and the importance of the choice of data set used for fitting the force field was investigated. It was found that a Lennard-Jones and Coulombic potential can describe the ethanol-alumina interaction in reasonable qualitative agreement with the OFT reference data, provided that the data set was representative of both short- and long-range interactions and high- and low-energy configurations. Using a few distance-dependent adsorption energy curves at different surface sites gives the best compromise between computing time and accuracy of a Lennard-Jones based force field. This approach demonstrates a systematic way to test the quality of a force field and provides insight into how to improve upon the representability for a complex adsorption energy landscape