2.1. Reflections on Custom Mobile App Development for Archaeological Data Collection

With the widespread adoption of tablet computers in 2010, archaeologists quickly began to envision new ways of completing traditional tasks. The technology seemed particularly well-suited for replacing the paper-and-pencil approach to data collection. In 2011, a custom mobile application—PKapp—was developed for the 2012 field season of the Pyla-Koutsopetria Archaeological Project in Cyprus. That application illuminated numerous possibilities for digital workflow in archaeological field research. Subsequently, mobile devices and software development tools have improved, making it easier to develop custom applications for data collection. Open-source HTML5 standards can ensure the software runs on any device regardless of platform, a robust selection of coding interfaces, libraries, and frameworks can speed up the development process and help avoid coding each line of the application by hand. This paper reflects upon the development of PKapp, considers the lessons learned, and describes how custom app development with open-source standards might be currently undertaken.https://dc.uwm.edu/arthist_mobilizingthepast/1009/thumbnail.jp

Archaeological Data and Small Projects: A Case Study from the Pyla-Koustopetria Archaeological Project on Cyprus

A case study in how small projects use digital tools

An Interview with Tony David Sampson: Author of Virality: Contagion Theory in the Age of Networks

We are delighted to have the opportunity to talk with Tony about how his work touches on issues of imitation and contagion—a loaded term unpacked within his 2013 book

The Role of Exosomal miR-181c-3p Within the Ovarian Tumor Microenvironment

https://openworks.mdanderson.org/sumexp22/1034/thumbnail.jp

Spatially Resolved Transcriptomics Identified Distinct Tumor-Stroma Crosstalk Networks Associated With Chemoresistance in Ovarian Cancer

https://openworks.mdanderson.org/sumexp21/1135/thumbnail.jp

Automorphisms of Real 4 Dimensional Lie Algebras and the Invariant Characterization of Homogeneous 4-Spaces

The automorphisms of all 4-dimensional, real Lie Algebras are presented in a comprehensive way. Their action on the space of $4\times 4$, real, symmetric and positive definite, matrices, defines equivalence classes which are used for the invariant characterization of the 4-dimensional homogeneous spaces which possess an invariant basis.Comment: LaTeX2e, 23 pages, 2 Tables. To appear in Journal of Physics A: Mathematical & Genera

Mll5 Is Required for Normal Spermatogenesis

Mll5 is currently a member of the Mll family of SET domain histone methyltransferase proteins but studies have also showed that it could be part of the SET3 branch of proteins. Recently, constitutive knock out animal studies have shown that Mll5 is required for proper haematopoietic stem cell differentiation, and loss of Mll5 results in synthetic lethality for genome de-methylation. Mll5 deficient male mice are infertile and here we analyse the consequences of Mll5 deficiency for spermatogenesis.Mll5 deficient male mice, but not female mice, are infertile. Here we show using RNA in-situ hybridization that Mll5 is expressed in the germ cells of the testes of wild type mice. Consistent with the expression of Mll5, we demonstrate by electron microscopy, video microscopy and in vitro fertilisation techniques that Mll5 deficient mice have defects in terminal maturation and packaging of sperm. The defects seen include detachment of the acrosomal cap and impaired excess cytoplasm removal. Functional tests of sperm motility show a lack of progressive motility of spermatozoa from Mll5 deficient animals. None of these defects could be rescued by in vitro fertilization. Using microarray analysis we show that transcripts implicated in spermatogenesis are dysregulated.Our data demonstrate a clear role of Mll5 in mammalian spermatogenesis at the level of terminal differentiation providing further support for its classification in the SET3 branch of proteins. Moreover, this study identifies Tlk2, Utx, Gpr64, Sult4a1, Rap2ip, Vstm2 and HoxA10 as possible Mll5 targets that together may account for the observed spermatozoa maturation defects

The testosterone-dependent and independent transcriptional networks in the hypothalamus of Gpr54 and Kiss1 knockout male mice are not fully equivalent.

BACKGROUND: Humans and mice with loss of function mutations in GPR54 (KISS1R) or kisspeptin do not progress through puberty, caused by a failure to release GnRH. The transcriptional networks regulated by these proteins in the hypothalamus have yet to be explored by genome-wide methods. RESULTS: We show here, using 1 million exon mouse arrays (Exon 1.0 Affymetrix) and quantitative polymerase chain reaction (QPCR) validation to analyse microdissected hypothalamic tissue from Gpr54 and Kiss1 knockout mice, the extent of transcriptional regulation in the hypothalamus. The sensitivity to detect important transcript differences in microdissected RNA was confirmed by the observation of counter-regulation of Kiss1 expression in Gpr54 knockouts and confirmed by immunohistochemistry (IHC). Since Gpr54 and Kiss1 knockout animals are effectively pre-pubertal with low testosterone (T) levels, we also determined which of the validated transcripts were T-responsive and which varied according to genotype alone. We observed four types of transcriptional regulation (i) genotype only dependent regulation, (ii) T only dependent regulation, (iii) genotype and T-dependent regulation with interaction between these variables, (iv) genotype and T-dependent regulation with no interaction between these variables. The results implicate for the first time several transcription factors (e.g. Npas4, Esr2), proteases (Klk1b22), and the orphan 10-transmembrane transporter TMEM144 in the biology of GPR54/kisspeptin function in the hypothalamus. We show for the neuronal activity regulated transcription factor NPAS4, that distinct protein over-expression is seen in the hypothalamus and hippocampus in Gpr54 knockout mice. This links for the first time the hypothalamic-gonadal axis with this important regulator of inhibitory synapse formation. Similarly we confirm TMEM144 up-regulation in the hypothalamus by RNA in situ hybridization and western blot. CONCLUSIONS: Taken together, global transcriptional profiling shows that loss of GPR54 and kisspeptin are not fully equivalent in the mouse hypothalamus.RIGHTS : This article is licensed under the BioMed Central licence at http://www.biomedcentral.com/about/license which is similar to the 'Creative Commons Attribution Licence'. In brief you may : copy, distribute, and display the work; make derivative works; or make commercial use of the work - under the following conditions: the original author must be given credit; for any reuse or distribution, it must be made clear to others what the license terms of this work are

Persistent anthrax as a major driver of wildlife mortality in a tropical rainforest

Anthrax is a globally important animal disease and zoonosis. Despite this, our current knowledge of anthrax ecology is largely limited to arid ecosystems, where outbreaks are most commonly reported. Here we show that the dynamics of an anthrax-causing agent, Bacillus cereus biovar anthracis, in a tropical rainforest have severe consequences for local wildlife communities. Using data and samples collected over three decades, we show that rainforest anthrax is a persistent and widespread cause of death for a broad range of mammalian hosts. We predict that this pathogen will accelerate the decline and possibly result in the extirpation of local chimpanzee (Pan troglodytes verus) populations. We present the epidemiology of a cryptic pathogen and show that its presence has important implications for conservation