The ROTSE-III Robotic Telescope System

The observation of a prompt optical flash from GRB990123 convincingly demonstrated the value of autonomous robotic telescope systems. Pursuing a program of rapid follow-up observations of gamma-ray bursts, the Robotic Optical Transient Search Experiment (ROTSE) has developed a next-generation instrument, ROTSE-III, that will continue the search for fast optical transients. The entire system was designed as an economical robotic facility to be installed at remote sites throughout the world. There are seven major system components: optics, optical tube assembly, CCD camera, telescope mount, enclosure, environmental sensing & protection and data acquisition. Each is described in turn in the hope that the techniques developed here will be useful in similar contexts elsewhere.Comment: 19 pages, including 4 figures. To be published in PASP in January, 2003. PASP Number IP02-11

An engineered Tetrahymena tRNA(Gln) for in vivo incorporation of unnatural amino acids into proteins by nonsense suppression

A new tRNA, THG73, has been designed and evaluated as a vehicle for incorporating unnatural amino acids site-specifically into proteins expressed in vivo using the stop codon suppression technique. The construct is a modification of tRNAGln(CUA) from Tetrahymena thermophila, which naturally recognizes the stop codon UAG. Using electrophysiological studies of mutations at several sites of the nicotinic acetylcholine receptor, it is established that THG73 represents a major improvement over previous nonsense suppressors both in terms of efficiency and fidelity of unnatural amino acid incorporation. Compared with a previous tRNA used for in vivo suppression, THG73 is as much as 100-fold less likely to be acylated by endogenous synthetases of the Xenopus oocyte. This effectively eliminates a major concern of the in vivo suppression methodology, the undesirable incorporation of natural amino acids at the suppression site. In addition, THG73 is 4-10-fold more efficient at incorporating unnatural amino acids in the oocyte system. Taken together, these two advances should greatly expand the range of applicability of the in vivo nonsense suppression methodology

On the full scale and model scale cavitation comparisons of a Deep-V catamaran research vessel

In pushing for greener ships and more sustainable operations, designers and researchers are being challenged to increase vessel performance whilst reducing environmental impact. One topical, and a somewhat challenging aspect of this pursuit, is the reduction in Underwater Radiated Noise (URN). There are several European Collaborative Research Projects currently underway that aim to outline a framework for noise standards, amongst these projects is the Seventh Framework Project (FP7) “Suppression of Underwater Noise Induced by Cavitation” (SONIC) that has been tasked with concentrating on the URN from propeller cavitation; the main contributor to underwater noise generation. As one of the participants of the SONIC project the Newcastle University was involved in the full-scale trials and model-scale propeller testing campaign. The full-scale trial conducted on board Newcastle University’s catamaran research vessel R/V The Princess Royal involved cavitation observations though the dedicated observation windows above each propeller, Propeller Excited Vibration measurements as well as the off-board URN measurements. The model scale tests were made in The Emerson Cavitation Tunnel using a 1:3.5 scale dummy model of the starboard side demi-hull of the vessel. These tests tried to emulate, as best as possible, the full-scale trials in terms of measurement locations and viewing angles

The biological context of HIV-1 host interactions reveals subtle insights into a system hijack

<p>Abstract</p> <p>Background</p> <p>In order to replicate, HIV, like all viruses, needs to invade a host cell and hijack it for its own use, a process that involves multiple protein interactions between virus and host. The HIV-1, Human Protein Interaction Database available at NCBI's website captures this information from the primary literature, containing over 2,500 unique interactions. We investigate the general properties and biological context of these interactions and, thus, explore the molecular specificity of the HIV-host perturbation. In particular, we investigate (i) whether HIV preferentially interacts with highly connected and 'central' proteins, (ii) known phenotypic properties of host proteins inferred from essentiality and disease-association data, and (iii) biological context (molecular function, processes and location) of the host proteins to identify attributes most strongly associated with specific HIV interactions.</p> <p>Results</p> <p>After correcting for ascertainment bias in the literature, we demonstrate a significantly greater propensity for HIV to interact with highly connected and central host proteins. Unexpectedly, we find there are no associations between HIV interaction and inferred essentiality. Similarly, we find a tendency for HIV not to interact with proteins encoded by genes associated with disease. Crucially, we find that functional categories over-represented in HIV-host interactions are innately enriched for highly connected and central proteins in the host system.</p> <p>Conclusions</p> <p>Our results imply that HIV's propensity to interact with highly connected and central proteins is a consequence of interactions with particular cellular functions, rather than being a direct effect of network topological properties. The lack of a propensity for interactions with phenotypically essential proteins suggests a selective pressure to minimise virulence in retroviral evolution. Thus, the specificity of HIV-host interactions is complex, and only superficially explained by network properties.</p

Bulletin No. 371 - Fifty Years of Dry Land Research at the Nephi Field Station

The Nephi Field Station is the oldest dry-Iand experimental farm in America still in operation. It was established in 1903 by action of the Utah legislature and has been in continuous operation since. Five other arid experimental farms were established in Utah at the same time (Widtsoe and Merrill 1905) but they were all discontinued prior to 1920 (Harris et al. 1920). The Nephi Field Station has had a most interesting history, and it is worthy of note that many of the men who were closely associated with it during its early history subsequently distinguished themselves as outstanding leaders. The station came into being largely as a result of the efforts of Dr. John A. Widtsoe, noted irrigation and dry farm authority of the west until his death in 1952. Under his leadership a systematic investigation was undertaken in 1901 to determine the possibilities of farming without irrigation in Utah. The experimental farm at Nephi was established largely as a result of that study

Leaf area index (LAI) of loblolly pine and emergent vegetation following a harvest. Trans

ABSTRACT. Forests provide goods and services to society and, often, refugia for plants and animals; forest managers utilize silviculture to provide ecosystem services and to create habitat. On the Coastal Plain of North Carolina, forest management objectives typically include wood fiber production but may also include the maintenance of environmental quality and, sometimes, species diversity. Silvicultural prescriptions alter stand structure and development trajectories by influencing the competitive interactions among plant species for site resources. Early site intervention may include nutrient additions and/or vegetation control; in coastal loblolly pine (Pinus taeda L.) stands, herbaceous and arborescent species can dominate the site leaf area index (LAI) for many years after a harvest (followed by planting). LAI is an important structural and functional component of a forest stand. Many eco‐hydrologic and water quality models do not accurately account for LAI as the process driver to evapotranspiration (ET), and thus they ignore the ecophysiological effects of LAI on site water balance and nutrient loading. We measured LAI of emergent vegetation following a harvest, mechanical site preparation, and then pine planting for a drained loblolly pine plantation in coastal North Carolina. For six years monthly, growing season estimates of LAI were obtained using a LI‐COR LAI 2000 Plant Canopy Analyzer (PCA) for control (D1), thinned (D3), and harvested (D2) watersheds. In this article, we present results from the D2 treatment. In D2, we “harvested ” all emergent vegetation in 18 randomly placed 1 m 2 clip plots for three growing seasons where we estimated LAI using species‐pooled estimates of specific leaf area and total leaf dry mass (i.e., LAICLIP); PCA measurements were recorded prior to clipping (LAIPCA). We als

Electron impact excitation cross sections for allowed transitions in atoms

We present a semiempirical Gaunt factor for widely used Van Regemorter formula [Astrophys. J. 136, 906 (1962)] for the case of allowed transitions in atoms with the LS coupling scheme. Cross sections calculated using this Gaunt factor agree with measured cross sections to within the experimental error.Comment: RevTeX, 3 pages, 10 PS figures, 2 PS tables, submitted to Phys. Rev.