Nitrogen isotopes in chlorophyll and the origin of Eastern Mediterranean sapropels

Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy at the Massachusetts Institute of Technology and the Woods Hole Oceanographic Institution February 1997The goals of this thesis were: (1) to establish methods for the determination of nitrogen and carbon isotope ratios in marine particulate and sedimentary chlorophyll derivatives; (2) to establish chlorophyll δ15N and δl3C as proxies for the nitrogen and carbon isotopic composition of marine phytoplankton; and (3) to use chlorophyll nitrogen isotopic ratios to understand the origin of Late Quaternary Eastern Mediterranean sapropels. Techniques are presented for the determination of chlorin nitrogen and carbon isotopic ratios in marine particles and sediments with a precision greater than 0.15 per mil for both isotopes. The procedure can be performed in about 4 hours for particulate and 8 hours for sediment samples, and relies on multiple chromatographic purifications. About 20 g of a moderately organic-rich sediment are required. A technique is also presented for the determination of chlorin nitrogen and carbon isotopic ratios by isotope-ratio monitoring gas chromatography-mass spectrometry (irmGC-MS) by synthesizing bis-(tert.-butyldimethylsiloxy)Si(IV) chlorin derivatives. However, yields for the 4-step synthesis were only about 5-6% and there was a net isotopic depletion of 1.2 (± 0.3) per mil in the derivative, relative to the starting material. These techniques are then used to show that the nitrogen isotopic difference between chlorophyll and whole cells in six species of marine phytoplankton is 5.16 ± 2.40 per mil. For carbon, the isotopic difference between chlorophyll and whole cells in five species of marine phytoplankton is -0.02 ± 2.12 per mil. A model of the distribution of 15N in phytoplankton is constructed and it is demonstrated that the interspecies variability observed for the nitrogen isotopic difference between chlorophyll and whole cells can be attributed to differences in the partitioning of cellular nitrogen between non-protein biochemicals. In the field, where mixed assemblages of phytoplankton prevail, the isotopic difference beween chlorophyll and whole cells is expected to tend toward the average value of 5.16 per mil. Finally, the average nitrogen isotopic composition of chlorins from six Late Quaternary Eastern Mediterranean sapropels (-5.01 + 0.38 per mil) was found to be very similar to the δ15N of chlorophyll from the modem deep chlorophyll maximum (-6.38 ± 1.80 per mil) in the Eastern Mediterranean. In addition, sapropel photoautotrophic material, calculated from the chlorin δ15N, had the same isotopic composition (0.15 per mil) as both bulk sapropel sediments (-0.08 ± 0.53 per mil) and deep water nitrate (-0.05 per mil). These data suggest (a) that bottom waters were anoxic, (b) that organic matter burial efficiency was enhanced, and (c) that oligotrophic conditions similar to today persisted, in the Eastern Mediterranean during sapropel deposition. These results contradict earlier interpretations of Late Quaternary bulk sedimentary δ15N in the Eastern Mediterranean. The latter concluded that the pattern of high δ15N values in intercalated marl oozes and low values in sapropels was the result of decreased nutrient utilization, and hence, increased primary production, during sapropel events. The low δ15N of deep water nitrate in the Eastern Mediterranean suggests a significant source of new nitrogen from biological N2-fixation. It is suggested that attempts to reconstruct the nitrogen isotopic composition of marine organic matter in the past by measuring the δ15N of whole sediments may be subject to misinterpretation due to the alteration of isotopic ratios during diagenesis. The partial oxidation of marine organic matter can result in significant isotopic enrichment of the preserved residual. The magnitude of this enrichment appears to be large when bottom waters are well-oxygenated, and small when bottom waters are anoxic. Environments where large temporal reqox changes have occurred are expected to be the most problematic for the interpretation of bulk sedimentary δ15N. In these environments, the diagenetic signal can be at least as large as the primary isotopic signal being sought. The Eastern Mediterranean Sea during the Late Quaternary appears to be one such environment.Funding for this work came from an Office of Naval Research Graduate Fellowship, the Woods Hole Oceanographic Institution Ocean Ventures Fund, and a Petroleum Research Grant(# 30124-AC2)

Climate and oceanography of the Galapagos in the 21st century : expected changes and research needs

With the likelihood that carbon dioxide and other greenhouse-gas levels in the atmosphere will continue to increase for the next decades, and that the planet as a whole will likely warm as a result, we expect the oceanography and climate of the Galapagos to change. Based on an analysis of observational studies and climate models, the main changes are likely to include higher sea-surface temperatures, continued El Niño and La Niña events, some of which will be intense, a rise in sea level of several cm, increased precipitation, lower surface ocean pH, and a reduction in upwelling. These changes will likely alter the marine and terrestrial ecosystems of the Galapagos in ways that are difficult to predict. Major uncertainties exist concerning the relationship between the expected regional changes in ocean temperatures, precipitation, upwelling and seawater pH that most climate models consider, and the local changes in the Galapagos Islands

Nitrogen isotopes in chlorophyll and the origin of Eastern Mediterranean sapropels

Thesis (Ph. D.)--Massachusetts Institute of Technology, Dept. of Earth, Atmospheric, and Planetary Sciences, 1997.Includes bibliographical references (p. 248-265).by Julian P. Sachs.Ph.D

A physico-chemical survey of inland lakes and saline ponds: Christmas Island (Kiritimati) and Washington (Teraina) Islands, Republic of Kiribati

The equatorial Pacific Ocean atoll islands of Kiritimati and Teraina encompass great physical, chemical and biological variability within extreme lacustrine environments. Surveys of lake chemistry and sediments revealed both intra- and inter-island variability. A survey of more than 100 lakes on Kiritimati found salinities from nearly fresh to 150 ppt with the highest values occurring within the isolated, inland portions of the island away from the influence of groundwater or extreme tides. Dissolved oxygen (DO) and pH values also showed considerable variability with a less regular spatial pattern, but were both generally inversely related to salinity. Series of lakes, progressively more isolated from marine communication, present a modern analog to the chemical and morphologic evolution of presently isolated basins. Sediments on both islands consist of interbedded red and green silt, possibly degraded bacterial mat, overlying white, mineralogenic silt precipitate. Variability may be indicative of shifts in climatological parameters such as the El Niño Southern Oscillation (ENSO) or the Pacific Intertropical Convergence Zone (ITCZ)

Eastern tropical Pacific hydrologic changes during the past 27,000 years from D/H ratios in alkenones

Author Posting. © American Geophysical Union, 2007. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Paleoceanography 22 (2007): PA4214, doi:10.1029/2007PA001468.The tropical Pacific plays a central role in the climate system by providing large diabatic heating that drives the global atmospheric circulation. Quantifying the role of the tropics in late Pleistocene climate change has been hampered by the paucity of paleoclimate records from this region and the lack of realistic transient climate model simulations covering this period. Here we present records of hydrogen isotope ratios (δD) of alkenones from the Panama Basin off the Colombian coast that document hydrologic changes in equatorial South America and the eastern tropical Pacific over the past 27,000 years (a) and the past 3 centuries in detail. Comparison of alkenone δD values with instrumental records of precipitation over the past ∼100 a suggests that δD can be used as a hydrologic proxy. On long timescales our records indicate reduced rainfall during the last glacial period that can be explained by a southward shift of the mean position of the Intertropical Convergence Zone and an associated reduction of Pacific moisture transport into Colombia. Precipitation increases at ∼17 ka in concert with sea surface temperature (SST) cooling in the North Atlantic and the eastern tropical Pacific. A regional coupled model, forced by negative SST anomalies in the Caribbean, simulates an intensification of northeasterly trade winds across Central America, increased evaporative cooling, and a band of increased rainfall in the northeastern tropical Pacific. These results are consistent with the alkenone SST and δD reconstructions that suggest increasing precipitation and SST cooling at the time of Heinrich event 1.K. P. and J. P. S. thank the Comer Science and Education Foundation for financial support. J. P. S. acknowledges support by the National Science Foundation (grant NSF-ESH-0639640). NSF grant OCE-0317702 funded cruise KNR176 to the Panama Basin and L. D. K.’s results presented here. A. T. is supported by the Japan Agency for Marine-Earth Science and Technology. S. P. X. is supported by the National Oceanic and Atmospheric Administration CLIVAR Program, the Japan Ministry of Education, Culture, Science and Technology through the Kyosei-7 Project, and the Japan Agency for Marine-Earth Science and Technology

Kazalište SUNO E ROMENGO – čiji san sanja romski teatar?

Relate well with surface elevation [29] at Redberry Lake. This correlation reflects the increasing rate of salinity change at Redberry.<p><b>Copyright information:</b></p><p>Taken from "Chemical and physical properties of some saline lakes in Alberta and Saskatchewan"</p><p>http://www.salinesystems.org/content/4/1/3</p><p>Saline Systems 2008;4():3-3.</p><p>Published online 22 Apr 2008</p><p>PMCID:PMC2365950.</p><p></p

Deep-Sea Oxygen Depletion and Ocean Carbon Sequestration During the Last Ice Age

Enhanced ocean carbon storage during the Pleistocene ice ages lowered atmospheric CO2 concentrations by 80 to 100 ppm relative to interglacial levels. Leading hypotheses to explain this phenomenon invoke a greater efficiency of the ocean's biological pump, in which case carbon storage in the deep sea would have been accompanied by a corresponding reduction in dissolved oxygen. We exploit the sensitivity of organic matter preservation in marine sediments to bottom water oxygen concentration to constrain the level of dissolved oxygen in the deep central equatorial Pacific Ocean during the last glacial period (18,000–28,000 years BP) to have been within the range of 20–50 μmol/kg, much less than the modern value of ~168 μmol/kg. We further demonstrate that reduced oxygen levels characterized the water column below a depth of ~1,000 m. Converting the ice age oxygen level to an equivalent concentration of respiratory CO2, and extrapolating globally, we estimate that deep‐sea CO2 storage during the last ice age exceeded modern values by as much as 850 Pg C, sufficient to balance the loss of carbon from the atmosphere (~200 Pg C) and from the terrestrial biosphere (~300–600 Pg C). In addition, recognizing the enhanced preservation of organic matter in ice age sediments of the deep Pacific Ocean helps reconcile previously unexplained inconsistencies among different geochemical and micropaleontological proxy records used to assess past changes in biological productivity of the ocean.Several grants from the U.S. National Science Foundation supported the production of the data reported here during the course of previous studies. However, the synthesis of results presented here was carried out without directed grant support except that S. L. J. acknowledges financial support by the Swiss National Science Foundation (grants PP00P2‐144811 and PP00P2‐172915)

Coral Reefs Will Transition to Net Dissolving Before End of Century

Ocean acidification refers to the lowering of the ocean’s pH due to the uptake of anthropogenic CO2 from the atmosphere. Coral reef calcification is expected to decrease as the oceans become more acidic. Dissolving calcium carbonate (CaCO3) sands could greatly exacerbate reef loss associated with reduced calcification but is presently poorly constrained. Here we show that CaCO3 dissolution in reef sediments across five globally distributed sites is negatively correlated with the aragonite saturation state (Ωar) of overlying seawater and that CaCO3 sediment dissolution is 10-fold more sensitive to ocean acidification than coral calcification. Consequently, reef sediments globally will transition from net precipitation to net dissolution when seawater Ωar reaches 2.92 ± 0.16 (expected circa 2050 CE). Notably, some reefs are already experiencing net sediment dissolution

Incentivising Use of Structured Language in Biological Descriptions: Author-Driven Phenotype Data and Ontology Production

Phenotypes are used for a multitude of purposes such as defining species, reconstructing phylogenies, diagnosing diseases or improving crop and animal productivity, but most of this phenotypic data is published in free-text narratives that are not computable. This means that the complex relationship between the genome, the environment and phenotypes is largely inaccessible to analysis and important questions related to the evolution of organisms, their diseases or their response to climate change cannot be fully addressed. It takes great effort to manually convert free-text narratives to a computable format before they can be used in large-scale analyses. We argue that this manual curation approach is not a sustainable solution to produce computable phenotypic data for three reasons: 1) it does not scale to all of biodiversity; 2) it does not stop the publication of free-text phenotypes that will continue to need manual curation in the future and, most importantly, 3) It does not solve the problem of inter-curator variation (curators interpret/convert a phenotype differently from each other). Our empirical studies have shown that inter-curator variation is as high as 40% even within a single project. With this level of variation, it is difficult to imagine that data integrated from multiple curation projects can be of high quality. The key causes of this variation have been identified as semantic vagueness in original phenotype descriptions and difficulties in using standardised vocabularies (ontologies). We argue that the authors describing phenotypes are the key to the solution. Given the right tools and appropriate attribution, the authors should be in charge of developing a project’s semantics and ontology. This will speed up ontology development and improve the semantic clarity of phenotype descriptions from the moment of publication. A proof of concept project on this idea was funded by NSF ABI in July 2017. We seek readers input or critique of the proposed approaches to help achieve community-based computable phenotype data production in the near future. Results from this project will be accessible through https://biosemantics.github.io/author-driven-production