An Upper Limit on Nickel Overabundance in the Supercritical Accretion Disk Wind of SS 433 from X-ray Spectroscopy

We analyze a long (with a total exposure time of 120 ks) X-ray observation of the unique Galactic microquasar SS 433 carried out by the XMM-Newton space observatory with the goal of searching for the fluorescent line of neutral (or weakly ionized) nickel at energy 7.5 keV. We consider two models for the formation of fluorescent lines in the spectrum of SS 433: (1) through the reflection of radiation from a putative central X-ray source off the optically thick neutral gas of the supercritical disk "funnel" walls; and (2) due to the scattering of the radiation coming from the hottest parts of the jets in the optically thin wind of the system. We show that for these two cases the flux of the Ni I K-alpha fluorescent line is expected to be 0.45 of the flux of the Fe I K-alpha fluorescent line at 6.4 keV for the relative nickel overabundance Z (Ni)/Z = 10 observed in the jets of SS 433. For the continuum model without the absorption edge of neutral iron, we have found an upper limit on the flux of the narrow Ni I K-alpha fluorescent line of 0.9 x 10(-5) phot s(-1) cm(-2) (90% confidence level). In the continuum model with the absorption edge we have determined an upper limit on the flux of the Ni I K-alpha line at the level of 2.5x10(-5) phot s(-1) cm(-2). At the same time, the flux of the fluorescent iron line has been measured to be 9.9 (8.4) (11.2) x 10(-5) phot s(-1) cm(-2). This result implies that the nickel overabundance in the accretion disk wind should be at least a factor of 1.5 times smal than the corresponding nickel overabundance observed in the jets of SS 433

Two state scattering problem to Multi-channel scattering problem: Analytically solvable model

Starting from few simple examples we have proposed a general method for finding an exact analytical solution for the two state scattering problem in presence of a delta function coupling. We have also extended our model to deal with general one dimensional multi-channel scattering problems

Simple isatin derivatives as free radical scavengers: Synthesis, biological evaluation and structure-activity relationship

To develop more potent small molecules with enhanced free radical scavenger properties, a series of N-substituted isatin derivatives was synthesized, and the cytoprotective effect on the apoptosis of PC12 cells induced by H2O2 was screened. All these compounds were found to be active, and N-ethyl isatin was found with the most potent activity of 69.7% protective effect on PC12 cells. Structure-activity relationship analyses showed the bioactivity of N-alkyl isatins decline as the increasing of the chain of the alkyl group, furthermore odd-even effect was found in the activity, which is interesting for further investigation

Curve Crossing Problem with Arbitrary Coupling: Analytically Solvable Model

We give a general method for finding an exact analytical solution for the two state curve crossing problem. The solution requires the knowledge of the Green's function for the motion on the uncoupled potential. We use the method to find the solution of the problem in the case of parabolic potentials coupled by Gaussian interaction. Our method is applied to this model system to calculate the effect of curve crossing on electronic absorption spectrum and resonance Raman excitation profile

Lepton Acceleration in Pulsar Wind Nebulae

Pulsar Wind Nebulae (PWNe) act as calorimeters for the relativistic pair winds emanating from within the pulsar light cylinder. Their radiative dissipation in various wavebands is significantly different from that of their pulsar central engines: the broadband spectra of PWNe possess characteristics distinct from those of pulsars, thereby demanding a site of lepton acceleration remote from the pulsar magnetosphere. A principal candidate for this locale is the pulsar wind termination shock, a putatively highly-oblique, ultra-relativistic MHD discontinuity. This paper summarizes key characteristics of relativistic shock acceleration germane to PWNe, using predominantly Monte Carlo simulation techniques that compare well with semi-analytic solutions of the diffusion-convection equation. The array of potential spectral indices for the pair distribution function is explored, defining how these depend critically on the parameters of the turbulent plasma in the shock environs. Injection efficiencies into the acceleration process are also addressed. Informative constraints on the frequency of particle scattering and the level of field turbulence are identified using the multiwavelength observations of selected PWNe. These suggest that the termination shock can be comfortably invoked as a principal injector of energetic leptons into PWNe without resorting to unrealistic properties for the shock layer turbulence or MHD structure.Comment: 19 pages, 5 figures, invited review to appear in Proc. of the inaugural ICREA Workshop on "The High-Energy Emission from Pulsars and their Systems" (2010), eds. N. Rea and D. Torres, (Springer Astrophysics and Space Science series

PPARgamma activity in subcutaneous abdominal fat tissue and fat mass gain during short-term overfeeding

Objective: As the peroxisome proliferator-activated receptor (PPAR) plays a central role in fat mass regulation, we investigated whether initial subcutaneous PPAR activity is related to fat mass generation during overfeeding. Subjects: Fourteen healthy female subjects (age 254 years, BMI 22.12.3 kg/m2). Design and measurements: Subjects were overfed with a diet supplying 50% more energy than baseline energy requirements for 14 days. Fasting blood samples were analyzed for leptin, insulin and glucose. Fasting subcutaneous abdominal fat biopsies were obtained for analysis of PPAR1, PPAR2, aP2 and UCP2 mRNAs. Results: Initial PPAR1 and 2, aP2 and UCP2 mRNAs were not related to fat gain (P>0.12). However, PPAR1, PPAR2 and aP2 mRNA changes were positively related to changes in plasma leptin (

On the power and the systematic biases of the detection of chromosomal inversions by paired-end genome sequencing

One of the most used techniques to study structural variation at a genome level is paired-end mapping (PEM). PEM has the advantage of being able to detect balanced events, such as inversions and translocations. However, inversions are still quite difficult to predict reliably, especially from high-throughput sequencing data. We simulated realistic PEM experiments with different combinations of read and library fragment lengths, including sequencing errors and meaningful base-qualities, to quantify and track down the origin of false positives and negatives along sequencing, mapping, and downstream analysis. We show that PEM is very appropriate to detect a wide range of inversions, even with low coverage data. However, % of inversions located between segmental duplications are expected to go undetected by the most common sequencing strategies. In general, longer DNA libraries improve the detectability of inversions far better than increments of the coverage depth or the read length. Finally, we review the performance of three algorithms to detect inversions -SVDetect, GRIAL, and VariationHunter-, identify common pitfalls, and reveal important differences in their breakpoint precisions. These results stress the importance of the sequencing strategy for the detection of structural variants, especially inversions, and offer guidelines for the design of future genome sequencing projects

SRG/ART-XC discovery of SRGA J204318.2+443815: Towards the complete population of faint X-ray pulsars

We report the discovery of the new long-period X-ray pulsar SRGA J204318.2+443815/SRGe J204319.0+443820 in a Be binary system. The source was found in the second all-sky survey by the Mikhail Pavlinsky ART-XC telescope on board the SRG mission. The followup observations with XMM-Newton, NICER, and NuSTAR allowed us to discover a strong coherent signal in the source light curve with a period of ~742 s. The pulsed fraction was found to depend on an increase in energy from ~20% in soft X-rays to >50% at high energies, as is typical for X-ray pulsars. The source has a quite hard spectrum with an exponential cutoff at high energies and a bolometric luminosity of Lx ≃ 4 x 1035 erg s-1. The X-ray position of the source is found to be consistent with the optical transient ZTF18abjpmzf, located at a distance of ~8.0 kpc. Dedicated optical and infrared observations with the RTT-150, NOT, Keck, and Palomar telescopes revealed a number of emission lines (Hα, He I, and the Paschen and Braket series) with a strongly absorbed continuum. According to the SRG scans and archival XMM-Newton data, the source flux is moderately variable (by a factor of 4-10) on timescales of several months and years. All this suggests that SRGA J204318.2+443815/SRGe J204319.0+443820 is a new quasipersistent low-luminosity X-ray pulsar in a distant binary system with a Be-star of the B0-B2e class. Thus the SRG observatory allowed us to unveil a hidden population of faint objects, including a population of slowly rotating X-ray pulsars in Be systems.</p

Comparing De Novo Genome Assembly: The Long and Short of It

Recent advances in DNA sequencing technology and their focal role in Genome Wide Association Studies (GWAS) have rekindled a growing interest in the whole-genome sequence assembly (WGSA) problem, thereby, inundating the field with a plethora of new formalizations, algorithms, heuristics and implementations. And yet, scant attention has been paid to comparative assessments of these assemblers' quality and accuracy. No commonly accepted and standardized method for comparison exists yet. Even worse, widely used metrics to compare the assembled sequences emphasize only size, poorly capturing the contig quality and accuracy. This paper addresses these concerns: it highlights common anomalies in assembly accuracy through a rigorous study of several assemblers, compared under both standard metrics (N50, coverage, contig sizes, etc.) as well as a more comprehensive metric (Feature-Response Curves, FRC) that is introduced here; FRC transparently captures the trade-offs between contigs' quality against their sizes. For this purpose, most of the publicly available major sequence assemblers – both for low-coverage long (Sanger) and high-coverage short (Illumina) reads technologies – are compared. These assemblers are applied to microbial (Escherichia coli, Brucella, Wolbachia, Staphylococcus, Helicobacter) and partial human genome sequences (Chr. Y), using sequence reads of various read-lengths, coverages, accuracies, and with and without mate-pairs. It is hoped that, based on these evaluations, computational biologists will identify innovative sequence assembly paradigms, bioinformaticists will determine promising approaches for developing “next-generation” assemblers, and biotechnologists will formulate more meaningful design desiderata for sequencing technology platforms. A new software tool for computing the FRC metric has been developed and is available through the AMOS open-source consortium