Genetic structure of Bertholletia excelsa populations from the Amazon at different spatial scales.

Population genetic structure and genetic diversity levels are important issues to understand population dynamics and to guide forest management plans. The Brazil nut tree (Bertholletia excelsa Bonpl.) is an endemic species, widely distributed through Amazonian upland forests and also an important species for the local extractive economy. Our aim was to analyze the genetic structure of Brazil nut trees at both fine and large scales throughout the Amazon Basin, contributing to the knowledge base on this species and to generate information to support plans for its conservation. We genotyped individuals from nine sites distributed in five regions of the Brazilian Amazon using 11 microsatellite loci. We found an excess of heterozygotes in most populations, with significant negative inbreeding coefficients (f) for five of them and the finescale structure, when present, was very small. These results, as a consequence of self-incompatibility, indicate that conservation plans for B. excelsa must include the maintenance of genetic diversity within populations to ensure viable amounts of seeds for both economic purposes and for the local persistence of the species.Published online: 24 March 2015

Phenotypic plasticity and the colonization of new habitats : A study of a colonial spider in the Chaco region and the Cerrado

In social animals, group prey capture could facilitate colonization of new areas with low resource availability. Parawixia bistriata is a colonial spider inhabiting seasonal dry forests and mesic habitats in South America. Individuals capture prey as a group, which allows individuals to broaden their foraging niche by incorporating large prey that cannot be subdued in solitary captures. P. bistriata exhibits two behavioural ecotypes a “dry” (plastic) ecotype which modifies individual’s tendency to capture prey in a group depending on food resources and a “wet” (fixed) ecotype, whose tendency to group prey capture is only modulated by the size of the prey but not by prey availability. By reconstructing the range expansion of the species using phylogeographic and species distribution modelling techniques, we indirectly examined whether group prey capture could have helped P. bistriata in colonization of low resource habitats. Based on cytochrome c oxidase subunit I gene genealogy, we found older populations in northern Cerrado in Brazil with more recent populations located further south in Dry and Humid Chaco in Argentina, with the latter being the most derived. Species distribution modelling for each ecotype suggests that suitable habitat for each ecotype started to overlap at some point during the Last Glacial Maximum (21 ky BP). These results suggest that P. bistriata expanded from northern Cerrado south to the Gran Chaco, being able to colonize mesic habitats at a later stage when individuals reached southern territories in the Chaco. This evidence is opposite to the idea that GPC facilitated P. bistriata colonization from mesic to harsher environments. However, plasticity in group prey capture could have been important to allow individuals to establish in mesic habitats by reducing the cost of group capture when under high resource levels.Facultad de Ciencias Naturales y Muse

Genetic diversity in natural populations of Jacaranda decurrens Cham. determined using RAPD and AFLP markers

Jacaranda decurrens (Bignoniaceae) is an endemic species of the Cerrado with validated antitumoral activity. The genetic diversity of six populations of J. decurrens located in the State of São Paulo was determined in this study by using molecular markers for randomly amplified polymorphic DNA (RAPD) and amplified fragment length polymorphism (AFLP). Following optimization of the amplification reaction, 10 selected primers generated 78 reproducible RAPD fragments that were mostly (69.2%) polymorphic. Two hundred and five reproducible AFLP fragments were generated by using four selected primer combinations; 46.3% of these fragments were polymorphic, indicating a considerable level of genetic diversity. Analysis of molecular variance (AMOVA) using these two groups of markers indicated that variability was strongly structured amongst populations. The unweighted pair group method with arithmatic mean (UPGMA) and Pearson's correlation coefficient (RAPD -0.16, p = 0.2082; AFLP 0.37, p = 0.1006) between genetic matrices and geographic distances suggested that the population structure followed an island model in which a single population of infinite size gave rise to the current populations of J. decurrens, independently of their spatial position. The results of this study indicate that RAPD and AFLP markers were similarly efficient in measuring the genetic variability amongst natural populations of J. decurrens. These data may be useful for developing strategies for the preservation of this medicinal species in the Cerrado

Genetic Population Structure And Hybridization In Two Sibling Species, Tomoplagia Reticulata And Tomoplagia Pallens (diptera: Tephritidae).

Tomoplagia reticulata and T. pallens are sibling species that are specialists on Eremanthus glomerulatus. Besides adult terminalia, they show slight morphological differences and distinct geographic distributions. Once, however, they were found sympatrically. Using data from allozyme and mtDNA, we examined patterns of intra- and interspecific genetic structure, and investigated the possible occurrence of gene flow between them. Both species showed low diversity and high genetic structure, which can be linked to their high degree of specialization. Larval development occurs within flower heads, tissues that are available only during a short period of the year. Afterward, as they do not hibernate, they probably suffer a great reduction in population size, which leads to low genetic diversity. As monophagous insects, their population structure may correspond to the fragmented distribution of E. glomerulatus, which could isolate fly populations and increase inbreeding within them. One population exhibited a mixed genetic composition, compatible with one hybridization season when species were sympatric. This hybridization seems to be a rare event, due to T. pallens unusual range expansion.71298-31

Fine-scale genetic structure of the periwinkle echinolittorina lineolata (gastropoda: littorinidae) : the interplay between space and time

Some marine species show homogeneous populations across most of their distributional range, but also population genetic structure at a smaller geographic scale. This intriguing scenario can be caused by different spatial and temporal factors, such as local oceanographic features, larval aggregation during dispersal, variable reproductive success and even natural selection. In this study, we evaluated small-scale population genetic structure in Echinolittorina lineolata, a gastropod with homogeneous populations at a large geographic scale in Brazil. Three concatenated mitochondrial DNA markers were used to infer genetic diversity and assess population-genetic differentiation between two locations. Repeated sampling of juveniles over time allowed us to test for constancy of genetic differentiation across four generations. Our diversity analysis revealed 103 haplotypes with low nucleotide diversity. The majority of the haplotypes were unique, but four were in high frequency and commonly found in individuals from both locations. There was only one location-specific haplotype with high frequency. When considering all samples, we detected spatial population differentiation within the dispersal range of E. lineolata. However, spatial differentiation was present in the first two generations sampled, while the following two showed genetic homogeneity between locations. In addition, there was genetic differentiation among individuals sampled from distinct rocks inside each location. When comparing generations within locations, different results were observed: in one location the first two generations were genetically similar, but differed from the following two generations; in the other location there was no genetic differentiation among all four generations. We hypothesize that E. lineolata is influenced by variance in reproductive success and resulting kinship among recruits. However, other factors could also cause transient genetic structure. We suggest that these curious genetic patterns can be better understood by combining the genetic information with in-depth knowledge of the species' biology and local oceanographic feature851-2737

Fly-pollinated Pleurothallis (orchidaceae) Species Have High Genetic Variability: Evidence From Isozyme Markers.

We conducted an isozyme study in 22 populations of five Pleurothallis (Orchidaceae) species (12 loci in nine enzymatic systems). The genetic variability in all populations is surprisingly high (P = 58-83%, A = 2.1-3.8, H(e) = 0.25-0.43) in spite of the fact that the five species are pollinated by small flies whose behavior enables self-pollination. We suggest that self-incompatibility, inbreeding depression, and mechanical barriers that prevent self-pollination in these species are responsible for the maintainance of the high genetic variability. These traits are uncommon in Orchidaceae, but have been observed in these and some other species pollinated by flies or other pollinators with behavior that facilitates self-pollination. The genetic similarity among conspecific populations is also high for species with very short-range flying pollinators. Only one population of P. teres presented values of genetic similarity lower than usually observed in allopatric conspecific populations. Morphology, however, does not support its segregation as a new taxon. All species can be recognized by their enzymatic patterns, and the results agree with recently proposed taxonomic realignments. Conversely, the supposed affinities among these species based on floral morphology are not supported, and we hypothesize that it may be due to convergence in species with similar pollinators.88419-2

Expected Coalescence Times And Segregating Sites In A Model Of Glacial Cycles.

The climatic fluctuations of the Quaternary have influenced the distribution of numerous plant and animal species. Several species suffer population reduction and fragmentation, becoming restricted to refugia during glacial periods and expanding again during interglacials. The reduction in population size may reduce the effective population size, mean coalescence time and genetic variation, whereas an increased subdivision may have the opposite effect. To investigate these two opposing forces, we proposed a model in which a panmictic and a structured phase alternate, corresponding to interglacial and glacial periods. From this model, we derived an expression for the expected coalescence time and number of segregating sites for a pair of genes. We observed that increasing the number of demes or the duration of the structured phases causes an increase in coalescence time and expected levels of genetic variation. We compared numerical results with the ones expected for a panmictic population of constant size, and showed that the mean number of segregating sites can be greater in our model even when population size is much smaller in the structured phases. This points to the importance of population structure in the history of species subject to climatic fluctuations, and helps explain the long gene genealogies observed in several organisms.5466-7