Phosphate Coordination in a Water-Oxidizing Cobalt Oxide Electrocatalyst Revealed by X-ray Absorption Spectroscopy at the Phosphorus K-Edge

In the research on water splitting at neutral pH, phosphorus-containing transition metal oxyhydroxides are often employed for catalyzing the oxygen evolution reaction (OER). We investigated a cobalt–phosphate catalyst (CoCat) representing this material class. We found that CoCat films prepared with potassium phosphate release phosphorus in phosphate-free electrolytes within hours, contrasting orders of magnitude’s faster K+ release. For P speciation and binding mode characterization, we performed technically challenging X-ray absorption spectroscopy experiments at the P K-edge and analyzed the resulting XANES and EXAFS spectra. The CoCat-internal phosphorus is present in the form of phosphate ions. Most phosphate species are likely linked to cobalt ions in Co–O–PO3 motifs, where the connecting oxygen could be a terminal or bridging ligand in Co-oxide fragments (P–Co distance, ~3.1 Å), with additional ionic bonds to K+ ions (P–K distance, ~3.3 Å). The phosphate coordination bond is stronger than the ionic K+-binding, explaining the strongly diverging ion release rates of phosphate and K+. Our results support a structural role of phosphate in the CoCat, with these ions binding at the margins of Co-oxide fragments, thereby limiting the long-range material ordering. The relations of catalyst-internal phosphate ions to cobalt’s redox-state changes, proton transfer, and catalytic activity are discussed

Role of Potassium in Electrocatalytic Water Oxidation Investigated in a Volume-Active Cobalt Material at Neutral pH

The oxygen evolution reaction (OER) is crucial in systems for sustainable production of hydrogen and other fuels. Catalytic OER materials often undergo potential-induced redox transitions localized at metal sites. For volume-active catalyst-materials, these are necessarily coupled to charge-compensating relocation of ions entering or leaving the material, which is insufficiently understood. The binding mode and mechanistic role of redox-inert ions for a cobalt-based oxyhydroxide material (CoCat) when operated at neutral pH in potassium-phosphate (KPi) electrolyte are investigated by i) determination of K:Co and P:Co stoichiometries for various KPi-concentrations and electrode potentials, ii) operando X-ray spectroscopy at the potassium and cobalt K-edges, and iii) novel time-resolved X-ray experiments facilitating comparison of K-release and Co-oxidation kinetics. Potassium likely binds non-specifically within water layers interfacing Co-oxyhydoxide fragments involving potassium–phosphate ion pairs. The potassium-release kinetics are potential-independent with a fast-phase time-constant of about 5 s and thus clearly slower than the potential-induced Co oxidation of about 300 ms. It is concluded that the charge-compensating ion flow is realized neither by potassium nor by phosphate ions, but by protons. The results reported here are likely relevant also for a broader class of volume-active OER catalyst materials and for the amorphized near-surface regions of microcrystalline materials

Internal Ribosomal Entry Site-Mediated Translation Is Important for Rhythmic PERIOD1 Expression

The mouse PERIOD1 (mPER1) plays an important role in the maintenance of circadian rhythm. Translation of mPer1 is directed by both a cap-dependent process and cap-independent translation mediated by an internal ribosomal entry site (IRES) in the 5′ untranslated region (UTR). Here, we compared mPer1 IRES activity with other cellular IRESs. We also found critical region in mPer1 5′UTR for heterogeneous nuclear ribonucleoprotein Q (HNRNPQ) binding. Deletion of HNRNPQ binding region markedly decreased IRES activity and disrupted rhythmicity. A mathematical model also suggests that rhythmic IRES-dependent translation is a key process in mPER1 oscillation. The IRES-mediated translation of mPer1 will help define the post-transcriptional regulation of the core clock genes

Genetic Variation in the Proximal Promoter of ABC and SLC Superfamilies: Liver and Kidney Specific Expression and Promoter Activity Predict Variation

Membrane transporters play crucial roles in the cellular uptake and efflux of an array of small molecules including nutrients, environmental toxins, and many clinically used drugs. We hypothesized that common genetic variation in the proximal promoter regions of transporter genes contribute to observed variation in drug response. A total of 579 polymorphisms were identified in the proximal promoters (−250 to +50 bp) and flanking 5′ sequence of 107 transporters in the ATP Binding Cassette (ABC) and Solute Carrier (SLC) superfamilies in 272 DNA samples from ethnically diverse populations. Many transporter promoters contained multiple common polymorphisms. Using a sliding window analysis, we observed that, on average, nucleotide diversity (π) was lowest at approximately 300 bp upstream of the transcription start site, suggesting that this region may harbor important functional elements. The proximal promoters of transporters that were highly expressed in the liver had greater nucleotide diversity than those that were highly expressed in the kidney consistent with greater negative selective pressure on the promoters of kidney transporters. Twenty-one promoters were evaluated for activity using reporter assays. Greater nucleotide diversity was observed in promoters with strong activity compared to promoters with weak activity, suggesting that weak promoters are under more negative selective pressure than promoters with high activity. Collectively, these results suggest that the proximal promoter region of membrane transporters is rich in variation and that variants in these regions may play a role in interindividual variation in drug disposition and response

Assembly, organization, and function of the COPII coat

A full mechanistic understanding of how secretory cargo proteins are exported from the endoplasmic reticulum for passage through the early secretory pathway is essential for us to comprehend how cells are organized, maintain compartment identity, as well as how they selectively secrete proteins and other macromolecules to the extracellular space. This process depends on the function of a multi-subunit complex, the COPII coat. Here we describe progress towards a full mechanistic understanding of COPII coat function, including the latest findings in this area. Much of our understanding of how COPII functions and is regulated comes from studies of yeast genetics, biochemical reconstitution and single cell microscopy. New developments arising from clinical cases and model organism biology and genetics enable us to gain far greater insight in to the role of membrane traffic in the context of a whole organism as well as during embryogenesis and development. A significant outcome of such a full understanding is to reveal how the machinery and processes of membrane trafficking through the early secretory pathway fail in disease states

Characterization of a trifunctional fatty acid desaturase from oleaginous filamentous fungus Mortierella alpina 1S-4 using a yeast expression system.

A ω3-fatty acid desaturase gene (maw3) which is involved in biosynthesis of n-3 polyunsaturated fatty acids (PUFAs) was previously isolated from Mortierella alpina 1S-4. In this report, we investigated the products of MAW3 catalyzing reaction with endogenous and exogenous fatty acids in the yeast transformant. Two unusual fatty acids de novo synthesized in the yeast transformant expressing maw3 gene were identified as n-4 hexadecadienoic acid (16:2(9cis, 12cis)) and n-1 hexadecatrienoic acid (16:3(9cis, 12cis, 15)) by GC-MS and (1)H NMR analyses. In addition to the desaturation activity at the ω3-position for 18- and 20-carbon PUFAs, MAW3 in the yeast transformant inserted a double bond at Δ12-position of endogenous palmitoleic acid (16:1(9cis)) and further at Δ15-position of the resulting 16:2(9cis, 12cis) to result in the formation of 16:3(9cis, 12cis, 15) leading to a bifunctional Δ12/Δ15-desaturase for 16-carbon fatty acids. Moreover, we evaluated the activity of MAW3 in the yeast transformant under different temperatures. The MAW3 did not have desaturation activities in M. alpina 1S-4 at 28°C but it had in the yeast transformant for various fatty acids. The MAW3 was demonstrated to be a trifunctional Δ12/Δ15/ω3-desaturase, exhibiting Δ12-desaturation for 16:1(9cis), Δ15-desaturation for 16- and 18-carbon fatty acids that had a preexisting cis-double bond at Δ12 position, and ω3-desaturation for 20-carbon fatty acids having that at Δ14-position. It is the first report that the fatty acid desaturase (MAW3) is shown to have Δ12- and Δ15-desaturation activities for a 16-carbon fatty acid, in addition to its major function, ω3-desaturation activity

Polyunsaturated fatty acid saturation by gut lactic acid bacteria affecting host lipid composition.

腸内細菌の脂肪酸代謝を解明 -腸内細菌と食事のバランスによる生活習慣病予防への新たな視点-. 京都大学プレスリリース. 2013-10-15.In the representative gut bacterium Lactobacillus plantarum, we identified genes encoding the enzymes involved in a saturation metabolism of polyunsaturated fatty acids and revealed in detail the metabolic pathway that generates hydroxy fatty acids, oxo fatty acids, conjugated fatty acids, and partially saturated trans-fatty acids as intermediates. Furthermore, we observed these intermediates, especially hydroxy fatty acids, in host organs. Levels of hydroxy fatty acids were much higher in specific pathogen-free mice than in germ-free mice, indicating that these fatty acids are generated through polyunsaturated fatty acids metabolism of gastrointestinal microorganisms. These findings suggested that lipid metabolism by gastrointestinal microbes affects the health of the host by modifying fatty acid composition