Biosensors in Fermentation Applications

Biosensing technology offers new analytic routes to the use and study of fermentations, taking advantage of the high selectivity and sensitivity of the bioactive elements it exploits. Various biosensors had been commercially available today; they provide fermentation processes with convenient, accurate, and cost-effective ways of monitoring for key biochemical parameters. In this chapter, the basic ideas and principles of biosensors, especially applications of the most popular biosensors related to fermentations were highlighted

Using Jackknife to Assess the Quality of Gene Order Phylogenies

Background In recent years, gene order data has attracted increasing attention from both biologists and computer scientists as a new type of data for phylogenetic analysis. If gene orders are viewed as one character with a large number of states, traditional bootstrap procedures cannot be applied. Researchers began to use a jackknife resampling method to assess the quality of gene order phylogenies. Results In this paper, we design and conduct a set of experiments to validate the performance of this jackknife procedure and provide discussions on how to conduct it properly. Our results show that jackknife is very useful to determine the confidence level of a phylogeny obtained from gene orders and a jackknife rate of 40% should be used. However, although a branch with support value of 85% can be trusted, low support branches require careful investigation before being discarded. Conclusions Our experiments show that jackknife is indeed necessary and useful for gene order data, yet some caution should be taken when the results are interpreted

Reasoning over the Air: A Reasoning-based Implicit Semantic-Aware Communication Framework

Semantic-aware communication is a novel paradigm that draws inspiration from human communication focusing on the delivery of the meaning of messages. It has attracted significant interest recently due to its potential to improve the efficiency and reliability of communication and enhance users' QoE. Most existing works focus on transmitting and delivering the explicit semantic meaning that can be directly identified from the source signal. This paper investigates the implicit semantic-aware communication in which the hidden information that cannot be directly observed from the source signal must be recognized and interpreted by the intended users. To this end, a novel implicit semantic-aware communication (iSAC) architecture is proposed for representing, communicating, and interpreting the implicit semantic meaning between source and destination users. A projection-based semantic encoder is proposed to convert the high-dimensional graphical representation of explicit semantics into a low-dimensional semantic constellation space for efficient physical channel transmission. To enable the destination user to learn and imitate the implicit semantic reasoning process of source user, a generative adversarial imitation learning-based solution, called G-RML, is proposed. Different from existing communication solutions, the source user in G-RML does not focus only on sending as much of the useful messages as possible; but, instead, it tries to guide the destination user to learn a reasoning mechanism to map any observed explicit semantics to the corresponding implicit semantics that are most relevant to the semantic meaning. Compared to the existing solutions, our proposed G-RML requires much less communication and computational resources and scales well to the scenarios involving the communication of rich semantic meanings consisting of a large number of concepts and relations.Comment: accepted at IEEE Transactions on Wireless Communication

Effects of Chitosan on Body Weight Gain, Growth Hormone and Intestinal Morphology in Weaned Pigs

The study was conducted to determine the effects of chitosan on the concentrations of GH and IGF-I in serum and small intestinal morphological structure of piglets, in order to evaluate the regulating action of chitosan on weaned pig growth through endocrine and intestinal morphological approaches. A total of 180 weaned pigs (35 d of age; 11.56±1.61 kg of body weight) were selected and assigned randomly to 5 dietary treatments, including 1 basal diet (control) and 4 diets with chitosan supplementation (100, 500, 1,000 and 2,000 mg/kg, respectively). Each treatment contained six replicate pens with six pigs per pen. The experiment lasted for 28 d. The results showed that the average body weight gain (BWG) of pigs was improved quadratically by dietary chitosan during the former 14 d and the later 14 d after weaned (p<0.05). Furthermore, dietary supplementation of chitosan tended to quadratically increase the concentration of serum GH on d 14 (p = 0.082) and 28 (p = 0.087). Diets supplemented with increasing levels of chitosan increased quadratically the villus height of jejunum and ileum on d 14 (p = 0.089, p<0.01) and 28 (p = 0.074, p<0.01), meanwhile, chitosan increased quadratically the ratio of villus height to crypt depth in duodenum, jejunum and ileum on d 14 (p<0.05, p = 0.055, p<0.01) and 28 (p<0.01, p<0.01, p<0.01), however, it decreased quadratically crypt depth in ileum on d 14 (p<0.05) and that in duodenum, jejunum and ileum on d 28 (p<0.01, p<0.05, p<0.05). In conclusion, these results indicated that chitosan could quadratically improve growth in weaned pigs, and the underlying mechanism may due to the increase of the serum GH concentration and improvement of the small intestines morphological structure

Stabilization of the Transcription Factors Slug and Twist by the Deubiquitinase Dub3 is a Key Requirement for Tumor Metastasis

The Epithelial-mesenchymal transition (EMT) represents a cellular de-differentiation process that provides cells with the increased plasticity required during embryonic development, tissue remodeling, wound healing and metastasis. Slug and Twist are two key EMT transcription factors (EMT-TFs) that are tightly regulated via ubiquitination and degradation. How Slug and Twist escape degradation and become stabilized in cancer cells remains unclear. One plausible mechanism of Slug and Twist stabilization involves removal of ubiquitin by deubiquitinases (DUBs). In this study, we identified Dub3 as a novel DUB for both Slug and Twist. We further found that Dub3 overexpression increased Slug and Twist protein levels in a dose-dependent manner, whereas Dub3-knockdown decreased their protein levels. Of importance, Dub3 interacted with Slug and Twist and prevented them from degradation, thereby promoting migration, invasion, and cancer stem cell (CSC)-like properties of breast cancer cells. Intriguingly, Dub3 was identified as an early response gene that was upregulated after exposure to inflammatory cytokines such as IL-6, which plays a critical role in the growth and metastasis of breast cancer cells, as well as the maintenance of breast CSCs. We found that Dub3 played an essential role in IL-6 induced EMT through stabilization of Slug and Twist. Our study has uncovered an IL-6-Dub3-Slug/Twist signaling axis during EMT and suggests potential approaches that could target Dub3 to prevent metastatic breast tumor