Using Time-Resolved Fluorescence to Measure Serum Venom-Specific IgE and IgG

We adapted DELFIA™ (dissociation-enhanced lanthanide fluoroimmunoassay), a time resolved fluorescence method, to quantitate whole venom specific and allergenic peptide-specific IgE (sIgE), sIgG1 and sIgG4 in serum from people clinically allergic to Australian native ant venoms, of which the predominant cause of allergy is jack jumper ant venom (JJAV). Intra-assay CV was 6.3% and inter-assay CV was 13.7% for JJAV sIgE. DELFIA and Phadia CAP JJAV sIgE results correlated well and had similar sensitivity and specificity for the detection of JJAV sIgE against intradermal skin testing as the gold standard. DELFIA was easily adapted for detecting sIgE to a panel of other native ant venoms

Operator theory and function theory in Drury-Arveson space and its quotients

The Drury-Arveson space $H^2_d$, also known as symmetric Fock space or the $d$-shift space, is a Hilbert function space that has a natural $d$-tuple of operators acting on it, which gives it the structure of a Hilbert module. This survey aims to introduce the Drury-Arveson space, to give a panoramic view of the main operator theoretic and function theoretic aspects of this space, and to describe the universal role that it plays in multivariable operator theory and in Pick interpolation theory.Comment: Final version (to appear in Handbook of Operator Theory); 42 page

Correlation Functions of Large N Chern-Simons-Matter Theories and Bosonization in Three Dimensions

We consider the conformal field theory of N complex massless scalars in 2+1 dimensions, coupled to a U(N) Chern-Simons theory at level k. This theory has a 't Hooft large N limit, keeping fixed \lambda = N/k. We compute some correlation functions in this theory exactly as a function of \lambda, in the large N (planar) limit. We show that the results match with the general predictions of Maldacena and Zhiboedov for the correlators of theories that have high-spin symmetries in the large N limit. It has been suggested in the past that this theory is dual (in the large N limit) to the Legendre transform of the theory of fermions coupled to a Chern-Simons gauge field, and our results allow us to find the precise mapping between the two theories. We find that in the large N limit the theory of N scalars coupled to a U(N)_k Chern-Simons theory is equivalent to the Legendre transform of the theory of k fermions coupled to a U(k)_N Chern-Simons theory, thus providing a bosonization of the latter theory. We conjecture that perhaps this duality is valid also for finite values of N and k, where on the fermionic side we should now have (for N_f flavors) a U(k)_{N-N_f/2} theory. Similar results hold for real scalars (fermions) coupled to the O(N)_k Chern-Simons theory.Comment: 49 pages, 16 figures. v2: added reference

The Ctf18 RFC-like complex positions yeast telomeres but does not specify their replication time

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Supergoop Dynamics

We initiate a systematic study of the dynamics of multi-particle systems with supersymmetric Van der Waals and electron-monopole type interactions. The static interaction allows a complex continuum of ground state configurations, while the Lorentz interaction tends to counteract this configurational fluidity by magnetic trapping, thus producing an exotic low temperature phase of matter aptly named supergoop. Such systems arise naturally in $\mathcal{N}=2$ gauge theories as monopole-dyon mixtures, and in string theory as collections of particles or black holes obtained by wrapping D-branes on internal space cycles. After discussing the general system and its relation to quiver quantum mechanics, we focus on the case of three particles. We give an exhaustive enumeration of the classical and quantum ground states of a probe in an arbitrary background with two fixed centers. We uncover a hidden conserved charge and show that the dynamics of the probe is classically integrable. In contrast, the dynamics of one heavy and two light particles moving on a line shows a nontrivial transition to chaos, which we exhibit by studying the Poincar\'e sections. Finally we explore the complex dynamics of a probe particle in a background with a large number of centers, observing hints of ergodicity breaking. We conclude by discussing possible implications in a holographic context.Comment: 35 pages,11 figures. v2: updated references to include a previous proof of classical integrability, exchanged a figure for a prettier versio

The effect of Ku on telomere replication time is mediated by telomere length but is independent of histone tail acetylation

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Mapping of Mycobacterium tuberculosis Complex Genetic Diversity Profiles in Tanzania and Other African Countries

The aim of this study was to assess and characterize Mycobacterium tuberculosis complex (MTBC) genotypic diversity in Tanzania, as well as in neighbouring East and other several African countries. We used spoligotyping to identify a total of 293 M. tuberculosis clinical isolates (one isolate per patient) collected in the Bunda, Dar es Salaam, Ngorongoro and Serengeti areas in Tanzania. The results were compared with results in the SITVIT2 international database of the Pasteur Institute of Guadeloupe. Genotyping and phylogeographical analyses highlighted the predominance of the CAS, T, EAI, and LAM MTBC lineages in Tanzania. The three most frequent Spoligotype International Types (SITs) were: SIT21/CAS1-Kili (n = 76; 25.94%), SIT59/LAM11-ZWE (n = 22; 7.51%), and SIT126/EAI5 tentatively reclassified as EAI3-TZA (n = 18; 6.14%). Furthermore, three SITs were newly created in this study (SIT4056/EAI5 n = 2, SIT4057/T1 n = 1, and SIT4058/EAI5 n = 1). We noted that the East-African-Indian (EAI) lineage was more predominant in Bunda, the Manu lineage was more common among strains isolated in Ngorongoro, and the Central-Asian (CAS) lineage was more predominant in Dar es Salaam (p-value<0.0001). No statistically significant differences were noted when comparing HIV status of patients vs. major lineages (p-value = 0.103). However, when grouping lineages as Principal Genetic Groups (PGG), we noticed that PGG2/3 group (Haarlem, LAM, S, T, and X) was more associated with HIV-positive patients as compared to PGG1 group (Beijing, CAS, EAI, and Manu) (p-value = 0.03). This study provided mapping of MTBC genetic diversity in Tanzania (containing information on isolates from different cities) and neighbouring East African and other several African countries highlighting differences as regards to MTBC genotypic distribution between Tanzania and other African countries. This work also allowed underlining of spoligotyping patterns tentatively grouped within the newly designated EAI3-TZA lineage (remarkable by absence of spacers 2 and 3, and represented by SIT126) which seems to be specific to Tanzania. However, further genotyping information would be needed to confirm this specificity

Optimal iterative methods for finding multiple roots of nonlinear equations using free parameters

[EN] In this paper, we propose a family of optimal eighth order convergent iterative methods for multiple roots with known multiplicity with the introduction of two free parameters and three univariate weight functions. Also numerical experiments have applied to a number of academical test functions and chemical problems for different special schemes from this family that satisfies the conditions given in convergence result.This research was partially supported by Ministerio de Economia y Competitividad MTM2014-52016-C02-2-P and Generalitat Valenciana PROMETEO/2016/089.Zafar, F.; Cordero Barbero, A.; Quratulain, R.; Torregrosa Sánchez, JR. (2018). Optimal iterative methods for finding multiple roots of nonlinear equations using free parameters. Journal of Mathematical Chemistry. 56(7):1884-1901. https://doi.org/10.1007/s10910-017-0813-1S18841901567R. Behl, A. Cordero, S.S. Motsa, J.R. Torregrosa, On developing fourth-order optimal families of methods for multiple roots and their dynamics. Appl. Math. Comput. 265(15), 520–532 (2015)R. Behl, A. Cordero, S.S. Motsa, J.R. Torregrosa, V. Kanwar, An optimal fourth-order family of methods for multiple roots and its dynamics. Numer. Algor. 71(4), 775–796 (2016)R. Behl, A. Cordero, S.S. Motsa, J.R. Torregrosa, An eighth-order family of optimal multiple root finders and its dynamics. Numer. Algor. (2017). doi: 10.1007/s11075-017-0361-6F.I. Chicharro, A. Cordero, J. R. Torregrosa, Drawing dynamical and parameters planes of iterative families and methods. Sci. World J. ID 780153 (2013)A. Constantinides, N. Mostoufi, Numerical Methods for Chemical Engineers with MATLAB Applications (Prentice Hall PTR, New Jersey, 1999)J.M. Douglas, Process Dynamics and Control, vol. 2 (Prentice Hall, Englewood Cliffs, 1972)Y.H. Geum, Y.I. Kim, B. Neta, A class of two-point sixth-order multiple-zero finders of modified double-Newton type and their dynamics. Appl. Math. Comput. 270, 387–400 (2015)Y.H. Geum, Y.I. Kim, B. Neta, A sixth-order family of three-point modified Newton-like multiple-root finders and the dynamics behind their extraneous fixed points. Appl. Math. Comput. 283, 120–140 (2016)J.L. Hueso, E. Martınez, C. Teruel, Determination of multiple roots of nonlinear equations and applications. J. Math. Chem. 53, 880–892 (2015)L.O. Jay, A note on Q-order of convergence. BIT Numer. Math. 41, 422–429 (2001)S. Li, X. Liao, L. Cheng, A new fourth-order iterative method for finding multiple roots of nonlinear equations. Appl. Math. Comput. 215, 1288–1292 (2009)S.G. Li, L.Z. Cheng, B. Neta, Some fourth-order nonlinear solvers with closed formulae for multiple roots. Comput. Math. Appl. 59, 126–135 (2010)B. Liu, X. Zhou, A new family of fourth-order methods for multiple roots of nonlinear equations. Nonlinear Anal. Model. Control 18(2), 143–152 (2013)M. Shacham, Numerical solution of constrained nonlinear algebraic equations. Int. J. Numer. Method Eng. 23, 1455–1481 (1986)M. Sharifi, D.K.R. Babajee, F. Soleymani, Finding the solution of nonlinear equations by a class of optimal methods. Comput. Math. Appl. 63, 764–774 (2012)J.R. Sharma, R. Sharma, Modified Jarratt method for computing multiple roots. Appl. Math. Comput. 217, 878–881 (2010)F. Soleymani, D.K.R. Babajee, T. Lofti, On a numerical technique forfinding multiple zeros and its dynamic. J. Egypt. Math. Soc. 21, 346–353 (2013)F. Soleymani, D.K.R. Babajee, Computing multiple zeros using a class of quartically convergent methods. Alex. Eng. J. 52, 531–541 (2013)R. Thukral, A new family of fourth-order iterative methods for solving nonlinear equations with multiple roots. J. Numer. Math. Stoch. 6(1), 37–44 (2014)R. Thukral, Introduction to higher-order iterative methods for finding multiple roots of nonlinear equations. J. Math. Article ID 404635 (2013)X. Zhou, X. Chen, Y. Song, Constructing higher-order methods for obtaining the muliplte roots of nonlinear equations. J. Comput. Math. Appl. 235, 4199–4206 (2011)X. Zhou, X. Chen, Y. Song, Families of third and fourth order methods for multiple roots of nonlinear equations. Appl. Math. Comput. 219, 6030–6038 (2013