Identification of Brucella by MALDI-TOF Mass Spectrometry. Fast and Reliable Identification from Agar Plates and Blood Cultures

BACKGROUND: MALDI-TOF mass spectrometry (MS) is a reliable method for bacteria identification. Some databases used for this purpose lack reference profiles for Brucella species, which is still an important pathogen in wide areas around the world. We report the creation of profiles for MALDI-TOF Biotyper 2.0 database (Bruker Daltonics, Germany) and their usefulness for identifying brucellae from culture plates and blood cultures. METHODOLOGY/PRINCIPAL FINDINGS: We created MALDI Biotyper 2.0 profiles for type strains belonging to B. melitensis biotypes 1, 2 and 3; B. abortus biotypes 1, 2, 5 and 9; B. suis, B. canis, B ceti and B. pinnipedialis. Then, 131 clinical isolates grown on plate cultures were used in triplicate to check identification. Identification at genus level was always correct, although in most cases the three replicates reported different identification at species level. Simulated blood cultures were performed with type strains belonging to the main human pathogenic species (B. melitensis, B. abortus, B. suis and B. canis), and studied by MALDI-TOF MS in triplicate. Identification at genus level was always correct. CONCLUSIONS/SIGNIFICANCE: MALDI-TOF MS is reliable for Brucella identification to the genus level from culture plates and directly from blood culture bottles

Analysis of the Localization of MEN Components by Live Cell Imaging Microscopy.

Mitotic exit is determined by multiple spatial and temporal cues from the spindle poles and the two compartments in a dividing yeast cell-the mother and the bud. These signals are ultimately integrated by the activation of the mitotic exit network (MEN) to promote persistent release of Cdc14 from the nucleolus. Live imaging analysis using fluorescent protein tags is invaluable to dissect this critical decision-making trigger. Here, we present protocols for routine yeast live cell microscopy applicable to this problem

Cytochrome b (5) null mouse: a new model for studying inherited skin disorders and the role of unsaturated fatty acids in normal homeostasis

Microsomal cytochrome b (5) is a ubiquitous, 15.2 kDa haemoprotein implicated in a number of cellular processes such as fatty acid desaturation, drug metabolism, steroid hormone biosynthesis and methaemoglobin reduction. As a consequence of these functions this protein has been considered essential for life. Most of the ascribed functions of cytochrome b (5), however, stem from in vitro studies and for this reason we have carried out a germline deletion of this enzyme. We have unexpectedly found that cytochrome b (5) null mice were viable and fertile, with pups being born at expected Mendelian ratios. However, a number of intriguing phenotypes were identified, including altered drug metabolism, methaemoglobinemia and disrupted steroid hormone homeostasis. In addition to these previously identified roles for this protein, cytochrome b (5) null mice displayed skin defects closely resembling those observed in autosomal recessive congenital ichthyosis and retardation of neonatal development, indicating that this protein, possibly as a consequence of its role in the de novo biosynthesis of unsaturated fatty acids, plays a central role in skin development and neonatal nutrition. Results from fatty acid profile analysis of several tissues suggest that cytochrome b (5) plays a role controlling saturated/unsaturated homeostasis. These data demonstrate that regional concentrations of unsaturated fatty acids are controlled by endogenous metabolic pathways and not by diet alone

Localization and loss of coherence in molecular double-slit experiments

In molecular double-slit experiments, the interference between emitted core electrons of diatomic molecules gives rise to oscillations in the observed electron intensity. Here, we explore this behaviour for photoelectrons emitted from CO and N_2 by soft X-ray ionization in the molecular frame, and we argue that in addition to the undisturbed emission process, intramolecular scattering can lead to electron interference between the scattered and unscattered wave in two ways: two-centre interference between two spatially coherent emitters and one-centre self-interference. The latter is the signature of a loss of spatial coherence. The spatial scale over which the transition from two-centre to one-centre coherence occurs is the de Broglie wavelength of the scattered photoelectron in units of the bond length. These results highlight the fact that the molecular double slit is based on two independent uncertainty principles, Δp_xΔx and ΔEΔt, the second of which causes ongoing tunnelling between the two centres, even after the collapse of the electron wavefunction in real space

Preference for cannibalism and ontogenetic constraints in competitive ability of piscivorous top predators

We experimentally show that the piscivorous top predator Arctic char (Salvelinus alpinus) have higher attack rates on cannibal prey compared to the interspecific prey species ninespine stickleback (Pungitius pungitius), and that sticklebacks are more efficient competitiors for zooplankton resources compared to juvenile char. We also conducted a literature survey that together with our experiments showed that piscivorous top consumers selected cannibal prey over interspecific prey in 9 out of 10 cases. Our literature survey also showed that specialist prey species are competitively superior compared to juvenile piscivorous species within the zooplankton niche. We discuss our results in relation to omnivory in fish communities and we suggest that the observed general preference for cannibal prey over interspecific prey in piscivores and the competitive advantage of prey species over juvenile piscivores may be major mechanisms for coexistence in fish communities

Influence of predation risk on the sheltering behaviour of the coral-dwelling damselfish, Pomacentrus moluccensis

Predation is a key ecosystem function, especially in high diversity systems such as coral reefs. Not only is predation one of the strongest top-down controls of prey population density, but it also is a strong driver of prey behaviour and function through non-lethal effects. We ask whether predation risk influences sheltering behaviour of damselfish living in mutualism with branching corals. Host corals gain multiple advantages from the mutualistic relationship which are determined by the strength of damselfish sheltering. Distance travelled by the Lemon Damselfish Pomacentrus moluccensis away from their host colony was measured here as a proxy for sheltering strength and was expected to be shortest under highest predation risk. Predation risk, defined as a function of predator abundance and activity, turbidity and habitat complexity, was quantified at four reef slope sites in Kepulauan Seribu, Indonesia. Damselfish sheltering strength was measured using stationary unmanned video cameras. Small damselfish (< 2 cm) increased their sheltering strength under high turbidity. Predator feeding activity, but not abundance, influenced damselfish sheltering strength. Contrary to our expectations, sheltering behaviour of adult damselfish decreased under high predator activity. While these observations are in line with risk-averse behaviour by juvenile P. moluccensis, they may indicate the presence of sentinel behaviour in the adults of this species. Habitat complexity seemed to be less important as a driver of damselfish behaviour. These counterintuitive results may indicate complex social behaviour and age-specific strategies for predator avoidance