Serological evidence of Flavivirus circulation in human populations in Northern Kenya : an assessment of disease risk 2016-2017

BACKGROUND: Yellow fever, Dengue, West Nile and Zika viruses are re-emerging mosquito-borne Flaviviruses of public health concern. However, the extent of human exposure to these viruses and associated disease burden in Kenya and Africa at large remains unknown. We assessed the seroprevalence of Yellow fever and other Flaviviruses in human populations in West Pokot and Turkana Counties of Kenya. These areas border Uganda, South Sudan and Ethiopia where recent outbreaks of Yellow fever and Dengue have been reported, with possibility of spillover to Kenya. METHODOLOGY: Human serum samples collected through a cross-sectional survey in West Pokot and Turkana Counties were screened for neutralizing antibodies to Yellow fever, Dengue-2, West Nile and Zika virus using the Plaque Reduction Neutralization Test (PRNT). Seroprevalence was compared by county, site and important human demographic characteristics. Adjusted odds ratios (aOR) were estimated using Firth logistic regression model. RESULTS: Of 877 samples tested, 127 neutralized with at least one of the four flaviviruses (14.5, 95% CI 12.3–17.0%), with a higher proportion in Turkana (21.1%, n = 87/413) than in West Pokot (8.6%, n = 40/464). Zika virus seroprevalence was significantly higher in West Pokot (7.11%) than in Turkana County (0.24%; χ 2 P < 0.0001). A significantly higher Yellow fever virus seroprevalence was also observed in Turkana (10.7%) compared to West Pokot (1.29%; χ 2 P < 0.0001). A high prevalence of West Nile virus was detected in Turkana County only (10.2%) while Dengue was only detected in one sample, from West Pokot. The odds of infection with West Nile virus was significantly higher in males than in females (aOR = 2.55, 95% CI 1.22–5.34). Similarly, the risk of Zika virus infection in West Pokot was twice higher in males than females (aOR = 2.01, 95% CI 0.91–4.41). CONCLUSION: Evidence of neutralizing antibodies to West Nile and Zika viruses indicates that they have been circulating undetected in human populations in these areas. While the observed Yellow Fever prevalence in Turkana and West Pokot Counties may imply virus activity, we speculate that this could also be as a result of vaccination following the Yellow Fever outbreak in the Omo river valley, South Sudan and Uganda across the borderNational Institutes of Health (NIH), UK Aid from the UK Government, Swedish International Development Cooperation Agency (Sida), Swiss Agency for Development and Cooperation (SDC) and the Kenyan Government.http://www.virologyj.compm2020Medical Virolog

The construction of marketing measures: the case of viewability

This study seeks to develop a critical understanding of marketing measures. Marketing measures inform a variety of marketing practices and have been subject to ethical, discursive and epistemological critique. Informed by a range of theoretical work, this study sheds light on the construction of a key marketing measure in digital advertising: viewability. It shows how a range of competing interests can be mobilized and aligned; how an object of interest can be stabilized; and how standards for measurement can be reconciled. Across this account, we can see how issues of accuracy, ideology and ethics are bracketed off as participants agree on which things matter and which things count

Global extent and drivers of mammal population declines in protected areas under illegal hunting pressure

Illegal hunting is a persistent problem in many protected areas, but an overview of the extent of this problem and its impact on wildlife is lacking. We reviewed 40 years (1980–2020) of global research to examine the spatial distribution of research and socio-ecological factors influencing population decline within protected areas under illegal hunting pressure. From 81 papers reporting 988 species/site combinations, 294 mammal species were reported to have been illegally hunted from 155 protected areas across 48 countries. Research in illegal hunting has increased substantially during the review period and showed biases towards strictly protected areas and the African continent. Population declines were most frequent in countries with a low human development index, particularly in strict protected areas and for species with a body mass over 100 kg. Our results provide evidence that illegal hunting is most likely to cause declines of large-bodied species in protected areas of resource-poor countries regardless of protected area conservation status. Given the growing pressures of illegal hunting, increased investments in people’s development and additional conservation efforts such as improving anti-poaching strategies and conservation resources in terms of improving funding and personnel directed at this problem are a growing priority

The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance

INTRODUCTION Investment in Africa over the past year with regard to severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) sequencing has led to a massive increase in the number of sequences, which, to date, exceeds 100,000 sequences generated to track the pandemic on the continent. These sequences have profoundly affected how public health officials in Africa have navigated the COVID-19 pandemic. RATIONALE We demonstrate how the first 100,000 SARS-CoV-2 sequences from Africa have helped monitor the epidemic on the continent, how genomic surveillance expanded over the course of the pandemic, and how we adapted our sequencing methods to deal with an evolving virus. Finally, we also examine how viral lineages have spread across the continent in a phylogeographic framework to gain insights into the underlying temporal and spatial transmission dynamics for several variants of concern (VOCs). RESULTS Our results indicate that the number of countries in Africa that can sequence the virus within their own borders is growing and that this is coupled with a shorter turnaround time from the time of sampling to sequence submission. Ongoing evolution necessitated the continual updating of primer sets, and, as a result, eight primer sets were designed in tandem with viral evolution and used to ensure effective sequencing of the virus. The pandemic unfolded through multiple waves of infection that were each driven by distinct genetic lineages, with B.1-like ancestral strains associated with the first pandemic wave of infections in 2020. Successive waves on the continent were fueled by different VOCs, with Alpha and Beta cocirculating in distinct spatial patterns during the second wave and Delta and Omicron affecting the whole continent during the third and fourth waves, respectively. Phylogeographic reconstruction points toward distinct differences in viral importation and exportation patterns associated with the Alpha, Beta, Delta, and Omicron variants and subvariants, when considering both Africa versus the rest of the world and viral dissemination within the continent. Our epidemiological and phylogenetic inferences therefore underscore the heterogeneous nature of the pandemic on the continent and highlight key insights and challenges, for instance, recognizing the limitations of low testing proportions. We also highlight the early warning capacity that genomic surveillance in Africa has had for the rest of the world with the detection of new lineages and variants, the most recent being the characterization of various Omicron subvariants. CONCLUSION Sustained investment for diagnostics and genomic surveillance in Africa is needed as the virus continues to evolve. This is important not only to help combat SARS-CoV-2 on the continent but also because it can be used as a platform to help address the many emerging and reemerging infectious disease threats in Africa. In particular, capacity building for local sequencing within countries or within the continent should be prioritized because this is generally associated with shorter turnaround times, providing the most benefit to local public health authorities tasked with pandemic response and mitigation and allowing for the fastest reaction to localized outbreaks. These investments are crucial for pandemic preparedness and response and will serve the health of the continent well into the 21st century

Gautrain rapid rail link : integrated technical planning, feasibility and business case

Paper presented at the 20th Annual South African Transport Conference 16 - 20 July 2001 "Meeting the transport challenges in Southern Africa", CSIR International Convention Centre, Pretoria, South Africa.This paper was transferred from the original CD ROM created for this conference. The material on the CD ROM was published using Adobe Acrobat technology. The original CD ROM was produced by Document Transformation Technologies Postal Address: PO Box 560 Irene 0062 South Africa. Tel.: +27 12 667 2074 Fax: +27 12 667 2766 E-mail: [email protected] URL: http://www.doctech.co.z

Joint commuter rail transport strategy

Paper presented at the South African Transport Conference 17 - 20 July 2000 "Action in transport for the new millennium", CSIR International Convention Centre, Pretoria, South Africa.This paper was transferred from the original CD ROM created for this conference. The material on the CD ROM was published using Adobe Acrobat technology. The original CD ROM was produced by Document Transformation Technologies Postal Address: PO Box 560 Irene 0062 South Africa. Tel.: +27 12 667 2074 Fax: +27 12 667 2766 E-mail: [email protected] URL: http://www.doctech.co.z

Decoupled geochemical behavior of As and Cu in hydrothermal systems

Cu-rich and As-rich growth zones in pyrite provide new insights into the composition of late-stage magmatic fluids and their host hydrothermal ore deposits. The pyrite is from the Pueblo Viejo (Dominican Republic) and Yanacocha (Peru) high-sulfidation gold-silver deposits, which are thought to form from hydrothermal systems that interacted with magmatic vapor plumes. Electron microprobe analysis, secondary ion mass spectrometry, and elemental maps show that pyrite, the most common sulfide mineral in both deposits, contains three different types of growth zones: (1) As-rich zones that are enriched in Au, Ag, Sb, Te, and Pb, (2) Cu-rich zones with significantly lower concentrations of these elements, and (3) barren pyrite zones with no other elements. These zones are interpreted to result from mixing between the pyrite-forming fluid and vapors that invaded the main hydrothermal system episodically. Comparison to experimental studies of elemental partitioning and analyses of fumaroles and fluid inclusions from magmatic-hydrothermal systems suggests that the As-rich vapor formed at high and possibly magmatic temperatures, whereas the Cu-rich vapor formed at lower temperatures, possibly during migration of the original magmatic vapor. The presence of finely spaced multiple growth zones in pyrite suggests that the composition of at least high-sulfidation hydrothermal systems can be affected intermittently and repetitively by vapors, probably from underlying magmas

Evaluation and selection of taro [Colocasia esculentra (L.) Schott] accessions under dryland conditions in South Africa

Published online: 08 Oct 2018Taro [Colocasia esculenta (L.) Schott] is an important underutilised staple food crop in South Africa, with a lot of potential to address food insecurity among poor rural households. Development of high yielding stable taro cultivars is one of the most important goals of plant breeders. Twenty-nine taro accessions collected from major taro producing regions of the country were evaluated for growth performance, yield potential and stability under dryland conditions at two sites (Umbumbulu and Roodeplaat) in 2013, 2014 and 2015 cropping seasons. The experiment was laid in a randomised complete block design replicated three times. Growth and yield traits were measured. Analysis of variance and correlation analysis was done on all measured traits. The genotype by environment interaction was analysed using additive main effects and multiplicative interaction (AMMI). As a result, significant variation was observed for most of the traits except number of leaves and leaf width as well as number of suckers, while all the traits showed significant variation for location by year interaction. Number of corms showed significant variation for location by year by genotype interaction among all the traits evaluated. Genotype effect was highly significant (p < .01) on plant height, corm length, number of corms and significant (p < .05) on yield. The significant difference between genotypes for these traits proves that there was a genetic variability and there is a scope for selection. The correlation study also reveals that majority of the characters were positively correlated with each other. Total yield was positively and highly significantly (p < .01) correlated with all the measured traits. AMMI was effective in identifying stable genotypes. The top ranking cultivars per environment may be considered for cultivation under the specific environment, the stable cultivars may be considered for cultivation across all the taro growing regions