475 research outputs found
Mapping the ultrafast flow of harvested solar energy in living photosynthetic cells
Photosynthesis transfers energy efficiently through a series of antenna complexes to the
reaction center where charge separation occurs. Energy transfer in vivo is primarily monitored
by measuring fluorescence signals from the small fraction of excitations that fail to
result in charge separation. Here, we use two-dimensional electronic spectroscopy to follow
the entire energy transfer process in a thriving culture of the purple bacteria, Rhodobacter
sphaeroides. By removing contributions from scattered light, we extract the dynamics of
energy transfer through the dense network of antenna complexes and into the reaction
center. Simulations demonstrate that these dynamics constrain the membrane organization
into small pools of core antenna complexes that rapidly trap energy absorbed by surrounding
peripheral antenna complexes. The rapid trapping and limited back transfer of these excitations
lead to transfer efficiencies of 83% and a small functional light-harvesting unit
"There is nothing so practical as a good theory": a pragmatic guide for selecting theoretical approaches for implementation projects
Background: A multitude of theories, models and frameworks relating to implementing evidence-based practice in health care exist, which can be overwhelming for clinicians and clinical researchers new to the field of implementation science. Clinicians often bear responsibility for implementation, but may be unfamiliar with theoretical approaches designed to inform or understand implementation. Main Text: In this article, a multidisciplinary group of clinicians and health service researchers present a pragmatic guide to help clinicians and clinical researchers understand what implementation theories, models and frameworks are; how a theoretical approach to implementation might be used; and some prompts to consider when selecting a theoretical approach for an implementation project. Ten commonly used and highly cited theoretical approaches are presented, none of which have been utilised to their full potential in the literature to date. Specifically, theoretical approaches tend to be applied retrospectively to evaluate or interpret findings from a completed implementation project, rather than being used to plan and design theory-informed implementation strategies which would intuitively have a greater likelihood of success. We emphasise that there is no right or wrong way of selecting a theoretical approach, but encourage clinicians to carefully consider the project's purpose, scope and available data and resources to allow them to select an approach that is most likely to "value-add" to the implementation project. Conclusion: By assisting clinicians and clinical researchers to become confident in selecting and applying theoretical approaches to implementation, we anticipate an increase in theory-informed implementation projects. This then will contribute to more nuanced advice on how to address evidence-practice gaps and ultimately to contribute to better health outcomes.Elizabeth A. Lynch, Alison Mudge, Sarah Knowles, Alison L. Kitson, Sarah C. Hunter and Gill Harve
Assembly of functional photosystem complexes in Rhodobacter sphaeroides incorporating carotenoids from the spirilloxanthin pathway
Carotenoids protect the photosynthetic apparatus against harmful radicals arising from the presence of both light and oxygen. They also act as accessory pigments for harvesting solar energy, and are required for stable assembly of many light-harvesting complexes. In the phototrophic bacterium Rhodobacter (Rba.) sphaeroides phytoene desaturase (CrtI) catalyses three sequential desaturations of the colourless carotenoid phytoene, extending the number of conjugated carbon–carbon double bonds, N, from three to nine and producing the yellow carotenoid neurosporene; subsequent modifications produce the yellow/red carotenoids spheroidene/spheroidenone (N = 10/11). Genomic crtI replacements were used to swap the native three-step Rba. sphaeroides CrtI for the four-step Pantoea agglomerans enzyme, which re-routed carotenoid biosynthesis and culminated in the production of 2,2′-diketo-spirilloxanthin under semi-aerobic conditions. The new carotenoid pathway was elucidated using a combination of HPLC and mass spectrometry. Premature termination of this new pathway by inactivating crtC or crtD produced strains with lycopene or rhodopin as major carotenoids. All of the spirilloxanthin series carotenoids are accepted by the assembly pathways for LH2 and RC–LH1–PufX complexes. The efficiency of carotenoid-to-bacteriochlorophyll energy transfer for 2,2′-diketo-spirilloxanthin (15 conjugated Cdouble bond; length as m-dashC bonds; N = 15) in LH2 complexes is low, at 35%. High energy transfer efficiencies were obtained for neurosporene (N = 9; 94%), spheroidene (N = 10; 96%) and spheroidenone (N = 11; 95%), whereas intermediate values were measured for lycopene (N = 11; 64%), rhodopin (N = 11; 62%) and spirilloxanthin (N = 13; 39%). The variety and stability of these novel Rba. sphaeroides antenna complexes make them useful experimental models for investigating the energy transfer dynamics of carotenoids in bacterial photosynthesis
Iterative graph cuts for image segmentation with a nonlinear statistical shape prior
Shape-based regularization has proven to be a useful method for delineating
objects within noisy images where one has prior knowledge of the shape of the
targeted object. When a collection of possible shapes is available, the
specification of a shape prior using kernel density estimation is a natural
technique. Unfortunately, energy functionals arising from kernel density
estimation are of a form that makes them impossible to directly minimize using
efficient optimization algorithms such as graph cuts. Our main contribution is
to show how one may recast the energy functional into a form that is
minimizable iteratively and efficiently using graph cuts.Comment: Revision submitted to JMIV (02/24/13
Communication: Broad manifold of excitonic states in light-harvesting complex 1 promotes efficient unidirectional energy transfer in vivo
In photosynthetic organisms, the pigment-protein complexes that comprise the light-harvesting
antenna exhibit complex electronic structures and ultrafast dynamics due to the coupling among
the chromophores. Here, we present absorptive two-dimensional (2D) electronic spectra from living
cultures of the purple bacterium,
Rhodobacter sphaeroides
, acquired using gradient assisted photon
echo spectroscopy
.
Diagonal slices through the 2D lineshape of the LH1 stimulated emission/ground
state bleach feature reveal a resolvable higher energy population within the B875 manifold. The
waiting time evolution of diagonal, horizontal, and vertical slices through the 2D lineshape shows
a sub-100 fs intra-complex relaxation as this higher energy population red shifts. The absorption
(855 nm) of this higher lying sub-population of B875 before it has red shifted optimizes spectral
overlap between the LH1 B875 band and the B850 band of LH2. Access to an energetically broad
distribution of excitonic states within B875 offers a mechanism for efficient energy transfer from LH2
to LH1 during photosynthesis while limiting back transfer. Two-dimensional lineshapes reveal a rapid
decay in the ground-state bleach/stimulated emission of B875. This signal, identified as a decrease
in the dipole strength of a strong transition in LH1 on the red side of the B875 band, is assigned to
the rapid localization of an initially delocalized exciton state, a dephasing process that frustrates back
transfer from LH1 to LH2
A diagnostic PCR assay for the detection of an Australian epidemic strain of Pseudomonas aeruginosa
Background Chronic lung infection with the bacterium Pseudomonas aeruginosa is one of the hallmarks of cystic fibrosis (CF) and is associated with worsening lung function, increased hospitalisation and reduced life expectancy. A virulent clonal strain of P. aeruginosa (Australian epidemic strain I; AES-I) has been found to be widespread in CF patients in eastern Australia. Methods Suppression subtractive hybridization (SSH) was employed to identify genetic sequences that are present in the AES-I strain but absent from the sequenced reference strain PAO1. We used PCR to evaluate the distribution of several of the AES-I loci amongst a collection of 188 P. aeruginosa isolates which was comprised of 35 AES-I isolates (as determined by PFGE), 78 non-AES-I CF isolates including other epidemic CF strains as well as 69 P. aeruginosa isolates from other clinical and environmental sources. Results We have identified a unique AES-I genetic locus that is present in all 35 AES-I isolates tested and not present in any of the other 153 P. aeruginosa strains examined. We have used this unique AES-I locus to develop a diagnostic PCR and a real-time PCR assay to detect the presence of P. aeruginosa and AES-I in patient sputum samples
Rotating Black Branes in the presence of nonlinear electromagnetic field
In this paper, we consider a class of gravity whose action represents itself
as a sum of the usual Einstein-Hilbert action with cosmological constant and an
gauge field for which the action is given by a power of the Maxwell
invariant. We present a class of the rotating black branes with Ricci flat
horizon and show that the presented solutions may be interpreted as black brane
solutions with two event horizons, extreme black hole and naked singularity
provided the parameters of the solutions are chosen suitably. We investigate
the properties of the solutions and find that for the special values of the
nonlinear parameter, the solutions are not asymptotically anti-deSitter. At
last, we obtain the conserved quantities of the rotating black branes and find
that the nonlinear source effects on the electric field, the behavior of
spacetime, type of singularity and other quantities.Comment: 7 pages, 5 figures, to appear in EPJ
Can forest management based on natural disturbances maintain ecological resilience?
Given the increasingly global stresses on forests, many ecologists argue that managers must maintain ecological resilience: the capacity of ecosystems to absorb disturbances without undergoing fundamental change. In this review we ask: Can the emerging paradigm of natural-disturbance-based management (NDBM) maintain ecological resilience in managed forests? Applying resilience theory requires careful articulation of the ecosystem state under consideration, the disturbances and stresses that affect the persistence of possible alternative states, and the spatial and temporal scales of management relevance. Implementing NDBM while maintaining resilience means recognizing that (i) biodiversity is important for long-term ecosystem persistence, (ii) natural disturbances play a critical role as a generator of structural and compositional heterogeneity at multiple scales, and (iii) traditional management tends to produce forests more homogeneous than those disturbed naturally and increases the likelihood of unexpected catastrophic change by constraining variation of key environmental processes. NDBM may maintain resilience if silvicultural strategies retain the structures and processes that perpetuate desired states while reducing those that enhance resilience of undesirable states. Such strategies require an understanding of harvesting impacts on slow ecosystem processes, such as seed-bank or nutrient dynamics, which in the long term can lead to ecological surprises by altering the forest's capacity to reorganize after disturbance
Low-mass pre--main-sequence stars in the Magellanic Clouds
[Abridged] The stellar Initial Mass Function (IMF) suggests that sub-solar
stars form in very large numbers. Most attractive places for catching low-mass
star formation in the act are young stellar clusters and associations, still
(half-)embedded in star-forming regions. The low-mass stars in such regions are
still in their pre--main-sequence (PMS) evolutionary phase. The peculiar nature
of these objects and the contamination of their samples by the evolved
populations of the Galactic disk impose demanding observational techniques for
the detection of complete numbers of PMS stars in the Milky Way. The Magellanic
Clouds, the companion galaxies to our own, demonstrate an exceptional star
formation activity. The low extinction and stellar field contamination in
star-forming regions of these galaxies imply a more efficient detection of
low-mass PMS stars than in the Milky Way, but their distance from us make the
application of special detection techniques unfeasible. Nonetheless, imaging
with the Hubble Space Telescope yield the discovery of solar and sub-solar PMS
stars in the Magellanic Clouds from photometry alone. Unprecedented numbers of
such objects are identified as the low-mass stellar content of their
star-forming regions, changing completely our picture of young stellar systems
outside the Milky Way, and extending the extragalactic stellar IMF below the
persisting threshold of a few solar masses. This review presents the recent
developments in the investigation of PMS stars in the Magellanic Clouds, with
special focus on the limitations by single-epoch photometry that can only be
circumvented by the detailed study of the observable behavior of these stars in
the color-magnitude diagram. The achieved characterization of the low-mass PMS
stars in the Magellanic Clouds allowed thus a more comprehensive understanding
of the star formation process in our neighboring galaxies.Comment: Review paper, 26 pages (in LaTeX style for Springer journals), 4
figures. Accepted for publication in Space Science Review
- …