23 research outputs found
Dynamics and Scaling of 2D Polymers in a Dilute Solution
The breakdown of dynamical scaling for a dilute polymer solution in 2D has
been suggested by Shannon and Choy [Phys. Rev. Lett. {\bf 79}, 1455 (1997)].
However, we show here both numerically and analytically that dynamical scaling
holds when the finite-size dependence of the relevant dynamical quantities is
properly taken into account. We carry out large-scale simulations in 2D for a
polymer chain in a good solvent with full hydrodynamic interactions to verify
dynamical scaling. This is achieved by novel mesoscopic simulation techniques
Neutron matter at zero temperature with auxiliary field diffusion Monte Carlo
The recently developed auxiliary field diffusion Monte Carlo method is
applied to compute the equation of state and the compressibility of neutron
matter. By combining diffusion Monte Carlo for the spatial degrees of freedom
and auxiliary field Monte Carlo to separate the spin-isospin operators, quantum
Monte Carlo can be used to simulate the ground state of many nucleon systems
(A\alt 100). We use a path constraint to control the fermion sign problem. We
have made simulations for realistic interactions, which include tensor and
spin--orbit two--body potentials as well as three-nucleon forces. The Argonne
and two nucleon potentials plus the Urbana or Illinois
three-nucleon potentials have been used in our calculations. We compare with
fermion hypernetted chain results. We report results of a Periodic Box--FHNC
calculation, which is also used to estimate the finite size corrections to our
quantum Monte Carlo simulations. Our AFDMC results for models of pure
neutron matter are in reasonably good agreement with equivalent Correlated
Basis Function (CBF) calculations, providing energies per particle which are
slightly lower than the CBF ones. However, the inclusion of the spin--orbit
force leads to quite different results particularly at relatively high
densities. The resulting equation of state from AFDMC calculations is harder
than the one from previous Fermi hypernetted chain studies commonly used to
determine the neutron star structure.Comment: 15 pages, 15 tables and 5 figure
A cluster theory for a Janus fluid
Recent Monte Carlo simulations on the Kern and Frenkel model of a Janus fluid
have revealed that in the vapour phase there is the formation of preferred
clusters made up of a well-defined number of particles: the micelles and the
vesicles. A cluster theory is developed to approximate the exact clustering
properties stemming from the simulations. It is shown that the theory is able
to reproduce the micellisation phenomenon.Comment: 27 pages, 8 figures, 6 table
Cell shape analysis of random tessellations based on Minkowski tensors
To which degree are shape indices of individual cells of a tessellation
characteristic for the stochastic process that generates them? Within the
context of stochastic geometry and the physics of disordered materials, this
corresponds to the question of relationships between different stochastic
models. In the context of image analysis of synthetic and biological materials,
this question is central to the problem of inferring information about
formation processes from spatial measurements of resulting random structures.
We address this question by a theory-based simulation study of shape indices
derived from Minkowski tensors for a variety of tessellation models. We focus
on the relationship between two indices: an isoperimetric ratio of the
empirical averages of cell volume and area and the cell elongation quantified
by eigenvalue ratios of interfacial Minkowski tensors. Simulation data for
these quantities, as well as for distributions thereof and for correlations of
cell shape and volume, are presented for Voronoi mosaics of the Poisson point
process, determinantal and permanental point processes, and Gibbs hard-core and
random sequential absorption processes as well as for Laguerre tessellations of
polydisperse spheres and STIT- and Poisson hyperplane tessellations. These data
are complemented by mechanically stable crystalline sphere and disordered
ellipsoid packings and area-minimising foam models. We find that shape indices
of individual cells are not sufficient to unambiguously identify the generating
process even amongst this limited set of processes. However, we identify
significant differences of the shape indices between many of these tessellation
models. Given a realization of a tessellation, these shape indices can narrow
the choice of possible generating processes, providing a powerful tool which
can be further strengthened by density-resolved volume-shape correlations.Comment: Chapter of the forthcoming book "Tensor Valuations and their
Applications in Stochastic Geometry and Imaging" in Lecture Notes in
Mathematics edited by Markus Kiderlen and Eva B. Vedel Jense
Comparison of dorsal root ganglion gene expression in rat models of traumatic and HIV-associated neuropathic pain
To elucidate the mechanisms underlying peripheral neuropathic pain in the context of HIV infection and antiretroviral therapy, we measured gene expression in dorsal root ganglia (DRG) of rats subjected to systemic treatment with the anti-retroviral agent, ddC (Zalcitabine) and concomitant delivery of HIV-gp120 to the rat sciatic nerve. L4 and L5 DRGs were collected at day 14 (time of peak behavioural change) and changes in gene expression were measured using Affymetrix whole genome rat arrays. Conventional analysis of this data set and Gene Set Enrichment Analysis (GSEA) was performed to discover biological processes altered in this model. Transcripts associated with G protein coupled receptor signalling and cell adhesion were enriched in the treated animals, while ribosomal proteins and proteasome pathways were associated with gene down-regulation. To identify genes that are directly relevant to neuropathic mechanical hypersensitivity, as opposed to epiphenomena associated with other aspects of the response to a sciatic nerve lesion, we compared the gp120Â +Â ddC-evoked gene expression with that observed in a model of traumatic neuropathic pain (L5 spinal nerve transection), where hypersensitivity to a static mechanical stimulus is also observed. We identified 39 genes/expressed sequence tags that are differentially expressed in the same direction in both models. Most of these have not previously been implicated in mechanical hypersensitivity and may represent novel targets for therapeutic intervention. As an external control, the RNA expression of three genes was examined by RT-PCR, while the protein levels of two were studied using western blot analysis