Interpretation at the controller's edge: designing graphical user interfaces for the digital publication of the excavations at Gabii (Italy)

This paper discusses the authors’ approach to designing an interface for the Gabii Project’s digital volumes that attempts to fuse elements of traditional synthetic publications and site reports with rich digital datasets. Archaeology, and classical archaeology in particular, has long engaged with questions of the formation and lived experience of towns and cities. Such studies might draw on evidence of local topography, the arrangement of the built environment, and the placement of architectural details, monuments and inscriptions (e.g. Johnson and Millett 2012). Fundamental to the continued development of these studies is the growing body of evidence emerging from new excavations. Digital techniques for recording evidence “on the ground,” notably SFM (structure from motion aka close range photogrammetry) for the creation of detailed 3D models and for scene-level modeling in 3D have advanced rapidly in recent years. These parallel developments have opened the door for approaches to the study of the creation and experience of urban space driven by a combination of scene-level reconstruction models (van Roode et al. 2012, Paliou et al. 2011, Paliou 2013) explicitly combined with detailed SFM or scanning based 3D models representing stratigraphic evidence. It is essential to understand the subtle but crucial impact of the design of the user interface on the interpretation of these models. In this paper we focus on the impact of design choices for the user interface, and make connections between design choices and the broader discourse in archaeological theory surrounding the practice of the creation and consumption of archaeological knowledge. As a case in point we take the prototype interface being developed within the Gabii Project for the publication of the Tincu House. In discussing our own evolving practices in engagement with the archaeological record created at Gabii, we highlight some of the challenges of undertaking theoretically-situated user interface design, and their implications for the publication and study of archaeological materials

Differences of interface and bulk transport properties in polymer field-effect devices

The influence of substrate treatment with self-assembled monolayers and thermal annealing was analysed by electrical and structural measurements on field-effect transistors (FETs) and metal-insulator-semiconductor (MIS) diodes using poly(3-hexylthiophene) (P3HT) as a semiconducting polymer and Si/SiO2 wafers as a substrate. It is found that surface treatment using silanising agents like hexamethyldisilazane (HMDS) and octadecyltrichlorosi-lane (OTS) can increase the field-effect mobility by up to a factor of 50, reaching values in saturation of more than 4E-2 cm^2/Vs at room temperature. While there is a clear correlation between the obtained field-effect mobility and the contact angle of water on the treated substrates, X-ray diffraction and capacitance measurements on MIS diodes show that structural and electrical properties in the bulk of the P3HT films are not influenced by the surface treatment. On the other hand, thermal annealing is found to cause an increase of grain size, bulk relaxation frequency and thereby of the mobility perpendicular to the SiO2/P3HT interface, but has very little influence on the field-effect mobility. Temperature dependent investigations on MIS diodes and FETs show that the transport perpendicular to the substrate plane is thermally activated and can be described by hopping in a Gaussian density of states, whereas the field-effect mobility in the substrate plane is almost temperature independent over a wide range. This investigations reveal significant differ-ences between interface and bulk transport properties in polymer field-effect devices.Comment: accepted at Organic electronic

Trophic interactions in Caribbean coral reefs

Trophic structure, Trophic levels, Coral reefs, Mathematical models, Ecopath (computer programme), Caribbean,

High pCO 2 levels affect metabolic rate, but not feeding behavior and fitness, of farmed giant mussel Choromytilus chorus

Indexación: Scopus.Acknowledgements. We thank Luisa Saavedra and Araceli Rodriguez-Romero for their help in the field and during laboratory activities. We also acknowledge Laura Ramajo for help with AT estimations. Emily Giles Neill provided valuable comments that greatly improved the manuscript. Special thanks are due to the reviewers and the editor for very constructive comments on the manuscript. This study was supported by the Millennium Nucleus Center for the Study of Multiple drivers on Marine Socio-Ecological Systems (MUSELS) funded by MINECON NC120086, PIA CONICYT ACT-172037 and FONDECYT grant nos. 1140938 and 1140092 to N.A.L. and M.A.L.Mar Ecol Prog Ser 454: 65−74 Findlay HS, Wood HL, Kendall MA, Spicer JI, Twitchett RJ, Widdicombe S (2009) Calcification, a physiological pro-cess to be considered in the context of the whole organ-ism. 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J Sea Res 90: 127−134 Lardies MA, Benítez S, Osores S, Vargas CA, Duarte C, Lohrmann KB, Lagos NA (2017) Physiological and histo - pathological impacts of increased carbon dioxide and temperature on the scallops Argopecten purpuratus cultured under upwelling influences in northern Chile. Aquaculture 479: 455−466 Lemasson AJ, Fletcher S, Hall-Spencer JM, Knights AM (2017) Linking the biological impacts of ocean acidifica-tion on oysters to changes in ecosystem services: a review. J Exp Mar Biol Ecol 492: 49−62 Mackenzie CL, Ormondroyd GA, Curling SF, Ball RJ, Whitely NM, Malham SK (2014) Ocean warming, more than acidification, reduces shell strength in a commercial shellfish species during food limitation. PLOS ONE 9: e86764 McElhany P (2017) CO2 sensitivity experiments are not suf-ficient to show an effect of ocean acidification. ICES J Mar Sci 74: 926−928 Mehrbach C, Culberson CH, Hawley JE, Pytkowicz RM (1973) Measurement of the apparent dissociation con-stants of carbonic acid in seawater at atmospheric pres-sure. Limnol Oceanogr 18: 897−907 Melzner F, Thomsen J, Koeve W, Oschlies A and others (2013) Future ocean acidification will be amplified by hypoxia in coastal habitats. Mar Biol 160: 1875−1888 Michaelidis B, Ouzounis C, Paleras A, Pörtner HO (2005) Effects of long-term moderate hypercapnia on acid−base balance and growth rate in marine mussels Mytilus gal-loprovincialis. Mar Ecol Prog Ser 293: 109−118 Miller AW, Reynolds AC, Sobrino C, Riedel GF (2009) Shell-fish face uncertain future in high CO2 world: influence of acidification on oyster larvae calcification and growth in estuaries. PLOS ONE 4: e5661 Navarro JM (1988) The effects of salinity on the physio - logical ecology of Choromytilus chorus (Molina, 1782) (Bivalvia: Mytilidae). J Exp Mar Biol Ecol 122: 19−33 Navarro JM, Torres R, Acuña K, Duarte C and others (2013) Impact of medium-term exposure to elevated pCO2 lev-els on the physiological energetics of the mussel Mytilus chilensis. Chemosphere 90: 1242−1248 Navarro JM, Duarte C, Manríquez PH, Lardies MA and oth-ers (2016) Ocean warming and elevated carbon dioxide: multiple stressor impacts on juvenile mussels from south-ern Chile. ICES J Mar Sci 73: 764−771 Nienhuis S, Palmer AR, Harley CD (2010) Elevated CO2 affects shell dissolution rate but not calcification rate in a marine snail. Proc R Soc B 277: 2553−2558 Orr JC, Fabry VJ, Aumont O, Bopp L and others (2005) Anthropogenic ocean acidification over the twenty-first century and its impact on calcifying organisms. Nature 437: 681−686 Osores SJ, Lagos NA, San Martin V, Manríquez PH and others (2017) Plasticity and inter-population variability in physiological and life-history traits of the mussel Mytilus chilensis: a reciprocal transplant experiment. 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Reg Environ Change 14(Suppl 1): 19−30 Sabine C, Feely RA, Gruber N, Key RM and others (2004) The oceanic sink of anthropogenic CO2. Science 305: 367–371 SERNAPESCA (Servicio Nacional de Pesca y Acuicultura) (2014) Anuarios estadísticos del Servicio Nacional de Pesca y Acuicultura. www.sernapesca.cl Solórzano L (1969) Determination of ammonia in natural waters by the phenolhypochlorite method. Limnol Oce - anogr 14: 799−801 Thomsen J, Melzner F (2010) Moderate seawater acidifica-tion does not elicit long-term metabolic depression in the blue mussel Mytilus edulis. Mar Biol 157: 2667−2676 Thomsen J, Casties I, Pansch C, Körtzinger A, Melzner F (2013) Food availability outweighs ocean acidification effects in juvenile Mytilus edulis: laboratory and field experiments. Glob Change Biol 19: 1017−1027 Thomsen J, Stapp LS, Haynert K, Schade H, Danelli M, Lannig G, Melzner F (2017) Naturally acidified habitat selects for ocean acidification-tolerant mussels. Sci Adv 3: e1602411 Toro B, Navarro JM, Palma-Fleming H (2003) Relationship between bioenergetics responses and organic pollutants in the giant mussel, Choromytilus chorus (Mollusca: Mytilidae). Aquat Toxicol 63: 257−269 Torres R, Pantoja S, Harada N, González HE, Daneri G, Frangopulos M, Fukasawa M (2011) Air-sea CO2 fluxes along the coast of Chile: from CO2 outgassing in central northern upwelling waters to CO2 uptake in southern Patagonian fjords. J Geophys Res 116: C09006 Torres R, Manriquez PH, Duarte C, Navarro JM, Lagos NA, Vargas CA, Lardies MA (2013) Evaluation of a semi - automatic system for long-term seawater carbonate chemistry manipulation. Rev Chil Hist Nat 86: 443−451 Vargas CA, Aguilera V, Martín V, Manríquez P and others (2015) CO2-driven ocean acidification disrupts the filter feeding behavior in Chilean gastropod and bivalve spe-cies from different geographic localities. Estuaries Coasts 38: 1163−1177 Vargas CA, Lagos NA, Lardies MA, Duarte C and others (2017) Species-specific responses to ocean acidification should account for local adaptation and adaptive plasti-city. Nature Ecol Evol 1: 0084 Vargas CA, Cuevas LA, Silva N, Gonzalez HE, Pol-Holz D, Narvaez DA (2018) Influence of glacier melting and river discharges on the nutrient distribution and DIC recycling in the southern Chilean Patagonia. J Geophys Res Bio-geosci 123: 256−270 Velasco LA, Navarro JM (2003) Energetic balance of infau-nal (Mulinia edulis King, 1831) and epifaunal (Mytilus chilensis Hupé, 1854) bivalves in response to wide varia-tions in concentration and quality of seston. J Exp Mar Biol Ecol 296: 79−92 Vihtakari M, Hendriks IE, Holding J, Renaud PE, Duarte CM, Havenhand JN (2013) Effects of ocean acidification and warming on sperm activity and early life stages of the Mediterranean mussel (Mytilus galloprovincialis). Water 5: 1890−1915 Wang Y, Li L, Hu M, Lu W (2015) Physiological energetic of the thick shell mussel Mytilus coruscus exposed to sea-water acidification and thermal stress. Sci Total Environ 514: 261−272 White MM, McCorkle DC, Mullineaux LS, Cohen AL (2013)Benthic habitats such as intertidal areas, sandy or rocky shores, upwelling zones, and estuaries are characterized by variable environmental conditions. This high variability of environmental stressors such as temperature, salinity, and pH/pCO 2 levels have been shown to impose restrictions on organismal performance. The giant mussel Choromytilus chorus forms intertidal and subtidal mussel beds in estuarine zones associated with fjords occurring in southern Chile and is an important aquacultural resource in Patagonia. In this study, we estimated the sensitivity of physiological traits and energy balance of C. chorus juveniles exposed to 3 pCO 2 treatments (500, 750, and 1200 μatm) for 30 d. Results showed that in acidified, high pCO 2 conditions, C. chorus juveniles had increased metabolic rates; however, other physiological traits (clearance and ingestion rates, ammonia excretion, absorption efficiency, growth rate, biomass production, net calcification, and dissolution rates) were not affected. These results suggest that when subjected to acidification, the adaptive response of C. chorus triggers tradeoffs among physiological traits that favor sustained feeding and growth in order to combat increased metabolic stress. As has been reported for other marine organisms, chronic exposure to variable pH/pCO 2 in their native habitats, such as estuarine zones, could explain the differential acclimatization capacity of giant mussels to cope with the increase in pCO 2 . Additionally, the fact that the mussels did not suffer from mortality indicates that increased pCO 2 levels may have chronic, but not lethal, effects on this species under these experimental conditions. © The authors 2017.https://www.int-res.com/abstracts/aei/v10/p267-278

The influence of distraction on speech processing: How selective is selective attention?

-* indicates shared first authorship - The present study investigated the effects of selective attention on the processing of morphosyntactic errors in unattended parts of speech. Two groups of German native (L1) speakers participated in the present study. Participants listened to sentences in which irregular verbs were manipulated in three different conditions (correct, incorrect but attested ablaut pattern, incorrect and crosslinguistically unattested ablaut pattern). In order to track fast dynamic neural reactions to the stimuli, electroencephalography was used. After each sentence, participants in Experiment 1 performed a semantic judgement task, which deliberately distracted the participants from the syntactic manipulations and directed their attention to the semantic content of the sentence. In Experiment 2, participants carried out a syntactic judgement task, which put their attention on the critical stimuli. The use of two different attentional tasks allowed for investigating the impact of selective attention on speech processing and whether morphosyntactic processing steps are performed automatically. In Experiment 2, the incorrect attested condition elicited a larger N400 component compared to the correct condition, whereas in Experiment 1 no differences between conditions were found. These results suggest that the processing of morphosyntactic violations in irregular verbs is not entirely automatic but seems to be strongly affected by selective attention

Nanofriction mechanisms derived from the dependence of friction on load and sliding velocity from air to UHV on hydrophilic silicon

This paper examines friction as a function of the sliding velocity and applied normal load from air to UHV in a scanning force microscope (SFM) experiment in which a sharp silicon tip slides against a flat Si(100) sample. Under ambient conditions, both surfaces are covered by a native oxide, which is hydrophilic. During pump-down in the vacuum chamber housing the SFM, the behavior of friction as a function of the applied normal load and the sliding velocity undergoes a change. By analyzing these changes it is possible to identify three distinct friction regimes with corresponding contact properties: (a) friction dominated by the additional normal forces induced by capillarity due to the presence of thick water films, (b) higher drag force from ordering effects present in thin water layers and (c) low friction due to direct solid-solid contact for the sample with the counterbody. Depending on environmental conditions and the applied normal load, all three mechanisms may be present at one time. Their individual contributions can be identified by investigating the dependence of friction on the applied normal load as well as on the sliding velocity in different pressure regimes, thus providing information about nanoscale friction mechanisms

Broca's area in the human brain is involved in the selection of grammatical gender for language production: Evidence from event-related functional magnetic resonance imaging

The neural correlates of the selection of grammatical gender during overt picture naming were investigated by event-related functional magnetic resonance imaging in the left hemisphere. Relative to simply naming a picture, the production of the definite determiner of the picture name (requiring gender selection) resulted exclusively in pronounced activation of a single region in the superior portion of Broca's area. This activation was not present in contrasts reflecting lexical access (naming a picture vs. saying “jaja” to a smiley) or articulation (saying “jaja” vs. rest). Rather, lexical access activated other inferior frontal regions, insula, fusiform and inferior temporal gyrus. Articulation involved insula, Rolandic operculum, motor and premotor cortex and superior temporal gyrus. The results are discussed with respect to data from studies investigating gender processing during language comprehension

Distributed cortical networks for syntax processing: Broca's area as the common denominator

Different types of syntactic information (word category, grammatical gender) are processed at different times during word recognition. However, it is an open issue which brain systems support these processes. In the present event-related fMRI study, subjects performed either a syntactic gender decision task on German nouns (GEN), a word category decision task (WC, nouns vs. prepositions), or a physical baseline task (BASE). Reaction times in WC were faster than in GEN, supporting earlier electrophysiological results. Relative to BASE, both syntactic tasks activated the inferior tip of BA 44. In addition, BA 45 showed activation in GEN, whereas BA 47 was activated in WC. The imaging data indicate that the inferior portion of BA 44 together with type-specific prefrontal areas supports both initial word category related and later syntactic processes

Dynamics of ColicinE2 production and release determine the competitive success of a toxin-producing bacterial population

The release of toxins is one mechanism used by bacterial species to establish dominance over competitors, but how the dynamics of toxin expression determine the competitive success of a toxin-producing population is largely unknown. Here, we investigate how the expression dynamics of ColicinE2 - a toxic bacteriocin - affect competition between toxin-producing and toxin-sensitive strains of Escherichia coli. We demonstrate that, in addition to genetic modifications in the toxin expression system, alterations of the growth medium can be used to modulate the timing of toxin production and the amount of toxin released. Thus cells that release the toxin at later times can accumulate more colicin. In experiments, we found that delaying toxin release does not significantly alter competition outcome. However, our theoretical analysis allowed us to assess the relative contributions of release time and toxin level to the competitive success of the producer strain, that might counteract each other in experiments. The results reveal that the importance of delaying toxin release lies in increasing the toxin amount. This is a more effective strategy for the toxin-producing strain than prompt discharge of the colicin. In summary, our study shows how the toxin release dynamics influence the competitive success of the toxin-producing bacterial population

High-dimensional modeling of spatial and spatio-temporal conditional extremes using INLA and the SPDE approach

The conditional extremes framework allows for event-based stochastic modeling of dependent extremes, and has recently been extended to spatial and spatio-temporal settings. After standardizing the marginal distributions and applying an appropriate linear normalization, certain non-stationary Gaussian processes can be used as asymptotically-motivated models for the process conditioned on threshold exceedances at a fixed reference location and time. In this work, we adopt a Bayesian perspective by implementing estimation through the integrated nested Laplace approximation (INLA), allowing for novel and flexible semi-parametric specifications of the Gaussian mean function. By using Gauss-Markov approximations of the Mat\'ern covariance function (known as the Stochastic Partial Differential Equation approach) at a latent stage of the model, likelihood-based inference becomes feasible even with thousands of observed locations. We explain how constraints on the spatial and spatio-temporal Gaussian processes, arising from the conditioning mechanism, can be implemented through the latent variable approach without losing the computationally convenient Markov property. We discuss tools for the comparison of models via their posterior distributions, and illustrate the flexibility of the approach with gridded Red Sea surface temperature data at over 6,000 observed locations. Posterior sampling is exploited to study the probability distribution of cluster functionals of spatial and spatio-temporal extreme episodes