INVISQUE: Technology and methodologies for interactive information visualization and analytics in large library collections

When a user knows exactly what they are looking for most library systems are adequate for their needs. However, when the user’s information needs are ill-defined - traditional library systems prove inadequate. This is because traditional library systems are not designed to support sense making rather for information retrieval. Visual analytics is the science of analytical reasoning facilitated by interactive visualizations and visual analytics systems can support both sense making and information retrieval. In this paper, we present INVISQUE - an approach and experimental software for interactive visual search and query. INVISQUE uses an index card metaphor to display library content, organized in a way that visually integrates attributes such citations and date published, making it easy to pick out the most recent and most cited paper. It uses design techniques such as focus+context to reveal relationships between documents, while avoiding the “what-was-I-looking-for?” problem

Middlesex University’s Invisque visual analytics tool: supported by text analytics techniques from the University of Leeds

This report describes the joint entry from Middlesex University and the University of Leeds for Mini Challenge 3 for the VAST Challenge 2011. In order to address the challenge question, the primary tool we used was Middlesex University’s Interactive Visual Search and Query Environment (INVISQUE), which served as the user interface to the Mini-Challenge 3 news corpus. INVISQUE was supported by corpus text analytics from the University of Leeds, which provided additional information that was visualised on the INVISQUE user interface

Characteristics of Two-Dimensional Quantum Turbulence in a Compressible Superfluid

Under suitable forcing a fluid exhibits turbulence, with characteristics strongly affected by the fluid's confining geometry. Here we study two-dimensional quantum turbulence in a highly oblate Bose-Einstein condensate in an annular trap. As a compressible quantum fluid, this system affords a rich phenomenology, allowing coupling between vortex and acoustic energy. Small-scale stirring generates an experimentally observed disordered vortex distribution that evolves into large-scale flow in the form of a persistent current. Numerical simulation of the experiment reveals additional characteristics of two-dimensional quantum turbulence: spontaneous clustering of same-circulation vortices, and an incompressible energy spectrum with $k^{-5/3}$ dependence for low wavenumbers $k$ and $k^{-3}$ dependence for high $k$.Comment: 7 pages, 7 figures. Reference [29] updated for v

Concern level assessment: building domain knowledge into a visual system to support network-security situation awareness

Information officers and network administrators require tools to help them achieve situation awareness about potential network threats. We describe a response to mini-challenge 1 of the 2012 IEEE VAST challenge in which we developed a visual analytic solution to a network security situation awareness problem. To support conceptual design, we conducted a series of knowledge elicitation sessions with domain experts. These provided an understanding of the information they needed to make situation awareness judgements as well as a characterisation of those judgements in the form of production rules which define a parameter we called the ‘Concern Level Assessment’ (CLA). The CLA was used to provide heuristic guidance within a visual analytic system called MSIEVE. An analysis of VAST challenge assessment sessions using M-SIEVE provides some evidence that intelligent heuristics like this can provide useful guidance without unduly dominating interaction and understanding

Mitochondria as a Target of Environmental Toxicants

Enormous strides have recently been made in our understanding of the biology and pathobiology of mitochondria. Many diseases have been identified as caused by mitochondrial dysfunction, and many pharmaceuticals have been identified as previously unrecognized mitochondrial toxicants. A much smaller but growing literature indicates that mitochondria are also targeted by environmental pollutants. We briefly review the importance of mitochondrial function and maintenance for health based on the genetics of mitochondrial diseases and the toxicities resulting from pharmaceutical exposure. We then discuss how the principles of mitochondrial vulnerability illustrated by those fields might apply to environmental contaminants, with particular attention to factors that may modulate vulnerability including genetic differences, epigenetic interactions, tissue characteristics, and developmental stage. Finally, we review the literature related to environmental mitochondrial toxicants, with a particular focus on those toxicants that target mitochondrial DNA. We conclude that the fields of environmental toxicology and environmental health should focus more strongly on mitochondri

M-Sieve: a visualisation tool for supporting network security analysts

The Middlesex Spatial Interactive Visualisation Environment (M-Sieve) is a spatiotemporal visual analytics tool for exploring computer network activity. M-Sieve allows the user to filter and visualize data through facets to explore and find patterns. To help guide exploration, we developed a set of rules which are used to derive a variable we call the ‘Concern Level Assessment’ (CLA). The CLA is based on attributes of nodes on the network. The rules were developed by eliciting inferences from network security domain experts. The combination of M-Sieve and the CLA allowed us to address the problem presented by the VAST 2012 Competition - Mini Challenge 1

Heterostructures produced from nanosheet-based inks

The new paradigm of heterostructures based on two-dimensional (2D) atomic crystals has already led to the observation of exciting physical phenomena and creation of novel devices. The possibility of combining layers of different 2D materials in one stack allows unprecedented control over the electronic and optical properties of the resulting material. Still, the current method of mechanical transfer of individual 2D crystals, though allowing exceptional control over the quality of such structures and interfaces, is not scalable. Here we show that such heterostructures can be assembled from chemically exfoliated 2D crystals, allowing for low-cost and scalable methods to be used in the device fabrication

Blockade of T-cell activation by dithiocarbamates involves novel mechanisms of inhibition of nuclear factor of activated T cells.

Dithiocarbamates (DTCs) have recently been reported as powerful inhibitors of NF-kappaB activation in a number of cell types. Given the role of this transcription factor in the regulation of gene expression in the inflammatory response, NF-kappaB inhibitors have been suggested as potential therapeutic drugs for inflammatory diseases. We show here that DTCs inhibited both interleukin 2 (IL-2) synthesis and membrane expression of antigens which are induced during T-cell activation. This inhibition, which occurred with a parallel activation of c-Jun transactivating functions and expression, was reflected by transfection experiments at the IL-2 promoter level, and involved not only the inhibition of NF-kappaB-driven reporter activation but also that of nuclear factor of activated T cells (NFAT). Accordingly, electrophoretic mobility shift assays (EMSAs) indicated that pyrrolidine DTC (PDTC) prevented NF-kappaB, and NFAT DNA-binding activity in T cells stimulated with either phorbol myristate acetate plus ionophore or antibodies against the CD3-T-cell receptor complex and simultaneously activated the binding of AP-1. Furthermore, PDTC differentially targeted both NFATp and NFATc family members, inhibiting the transactivation functions of NFATp and mRNA induction of NFATc. Strikingly, Western blotting and immunocytochemical experiments indicated that PDTC promoted a transient and rapid shuttling of NFATp and NFATc, leading to their accelerated export from the nucleus of activated T cells. We propose that the activation of an NFAT kinase by PDTC could be responsible for the rapid shuttling of the NFAT, therefore transiently converting the sustained transactivation of this transcription factor that occurs during lymphocyte activation, and show that c-Jun NH2-terminal kinase (JNK) can act by directly phosphorylating NFATp. In addition, the combined inhibitory effects on NFAT and NF-KB support a potential use of DTCs as immunosuppressants