Design of testbed and emulation tools

The research summarized was concerned with the design of testbed and emulation tools suitable to assist in projecting, with reasonable accuracy, the expected performance of highly concurrent computing systems on large, complete applications. Such testbed and emulation tools are intended for the eventual use of those exploring new concurrent system architectures and organizations, either as users or as designers of such systems. While a range of alternatives was considered, a software based set of hierarchical tools was chosen to provide maximum flexibility, to ease in moving to new computers as technology improves and to take advantage of the inherent reliability and availability of commercially available computing systems

Evolutionary rates and gene dispensability associate with replication timing in the Archaeon Sulfolobus islandicus

In bacterial chromosomes, the position of a gene relative to the single origin of replication generally reflects its replication timing, how often it is expressed, and consequently, its rate of evolution. However, because some archaeal genomes contain multiple origins of replication, bias in gene dosage caused by delayed replication should be minimized and hence the substitution rate of genes should associate less with chromosome position. To test this hypothesis, six archaeal genomes from the genus Sulfolobus containing three origins of replication were selected, conserved orthologs were identified, and the evolutionary rates (dN and dS) of these orthologs were quantified. Ortholog families were grouped by their consensus position and designated by their proximity to one of the three origins (O1, O2, O3). Conserved orthologs were concentrated near the origins and most variation in genome content occurred distant from the origins. Linear regressions of both synonymous and nonsynonymous substitution rates on distance from replication origins were significantly positive, the rates being greatest in the region furthest from any of the origins and slowest among genes near the origins. Genes near O1 also evolved faster than those near O2 and O3, which suggest that this origin may fire later in the cell cycle. Increased evolutionary rates and gene dispensability are strongly associated with reduced gene expression caused in part by reduced gene dosage during the cell cycle. Therefore, in this genus of Archaea as well as in many Bacteria, evolutionary rates and variation in genome content associate with replication timing

Heavy Baryons in a Quark Model

A quark model is applied to the spectrum of baryons containing heavy quarks. The model gives masses for the known heavy baryons that are in agreement with experiment, but for the doubly-charmed baryon Cascade_{cc}, the model prediction is too heavy. Mixing between the Cascade_Q and Cascade_Q^\prime states is examined and is found to be small for the lowest lying states. In contrast with this, mixing between the Cascade_{bc} and Cascade_{bc}^\prime states is found to be large, and the implication of this mixing for properties of these states is briefly discussed. We also examine heavy-quark spin-symmetry multiplets, and find that many states in the model can be placed in such multiplets. We compare our predictions with those of a number of other authors.Comment: Version published in International Journal of Modern Physics

Fine Grained Robotics

Fine grained robotics is the idea of solving problems utilizing multitudes of very simple machines in place of one large complex entity. Organized in the proper way, simple machines and simple behaviors can lead to emergent solutions. Just as ants and termites perform useful work and build communal structures, gnat robots can solve problems in new ways. This notion of collective intelligence, married with technologies for mass-producing small robots very cheaply will blaze new avenues in all aspects of everyday life. Building gnat robots involves not only inventing the components from which to put together systems but also developing the technologies to produce the components. This paper analyzes prototype microrobotic systems, specifically calculating torque and power requirements for three locomotion alternatives (flying, walking and swimming) for small robots. With target specifications for motors for these systems, we then review technology options and bottlenecks and sort through the tree of possibilities to pick and appropriate path along which we plan to proceed.MIT Artificial Intelligence Laborator

A New Method for Obtaining Binary Pulsar Distances and its Implications for Tests of General Relativity

We demonstrate how measuring orbital period derivatives can lead to more accurate distance estimates and transverse velocities for some nearby binary pulsars. In many cases this method will estimate distances more accurately than is possible by annual parallax, as the relative error decreases as t^-5/2. Unfortunately, distance uncertainties limit the degree to which nearby relativistic binary pulsars can be used for testing the general relativistic prediction of orbital period decay to a few percent. Nevertheless, the measured orbital period derivative of PSR B1534+12 agrees within the observational uncertainties with that predicted by general relativity if the proper-motion contribution is accounted for.Comment: 4 pages, latex, uuencoded compressed postscript + source, no figures, uses aaspptwo.sty and dec.sty, accepted for publication in ApJL, omitted reference now include

Water Quality, nutrients and the European Union’s Water Framework Directive in a lowland agricultural region: Suffolk, south-east England.

The water quality of 13 rivers in the lowland, agricultural county of Suffolk is investigated using routine monitoring data for the period 1981 to 2006 collected by the Environment Agency of England and Wales (EA), and its predecessors, with particular emphasis on phosphorus (as total reactive phosphorus, TRP) and total (dissolved and particulate) oxidised nitrogen (TOxN – predominantly nitrate NO3). Major ion and flow data are used to outline fundamental hydrochemical characteristics related to the groundwater provenance of base-flow waters. Relative load contributions from point and diffuse sources are approximated using Load Apportionment Modelling for both TRP and TOxN where concurrent flow and concentration data are available. Analyses indicate a mixture of point and diffuse sources of TRP, with the former being dominant during low flow periods, while for TOxN diffuse sources dominate. Out of 59 sites considered, 53 (90%) were found to have annual average TRP concentrations greater than 0.05 mg P l-1, and 36 (61%) had average concentrations over 0.120 mg P l-1, the upper thresholds for ‘High’ and ‘Good’ ecological status, respectively. Correspondingly, for TOxN, most of the rivers are already within 70% of the 11.3 mg N l-1 threshold, with two rivers (Wang and Ore) being consistently greater than this. It is suggested that the major challenge is to characterise and control point-source TRP inputs which, being predominant during the late spring and summer low-flow period, coincide with the peak of primary biological production, thus presenting the major challenge to achieving ‘good’ ecological status under the Water Framework Directive. Results show that considerable effort is still required to ensure appropriate management and develop tools for decision-support

Extending Elliptic Curve Chabauty to higher genus curves

We give a generalization of the method of "Elliptic Curve Chabauty" to higher genus curves and their Jacobians. This method can sometimes be used in conjunction with covering techniques and a modified version of the Mordell-Weil sieve to provide a complete solution to the problem of determining the set of rational points of an algebraic curve $Y$.Comment: 24 page