A myoelectric digital twin for fast and realistic modelling in deep learning

Muscle electrophysiology has emerged as a powerful tool to drive human machine interfaces, with many new recent applications outside the traditional clinical domains, such as robotics and virtual reality. However, more sophisticated, functional, and robust decoding algorithms are required to meet the fine control requirements of these applications. Deep learning has shown high potential in meeting these demands, but requires a large amount of high-quality annotated data, which is expensive and time-consuming to acquire. Data augmentation using simulations, a strategy applied in other deep learning applications, has never been attempted in electromyography due to the absence of computationally efficient models. We introduce a concept of Myoelectric Digital Twin - highly realistic and fast computational model tailored for the training of deep learning algorithms. It enables simulation of arbitrary large and perfectly annotated datasets of realistic electromyography signals, allowing new approaches to muscular signal decoding, accelerating the development of human-machine interfaces

Tractography passes the test: Results from the diffusion-simulated connectivity (disco) challenge.

Estimating structural connectivity from diffusion-weighted magnetic resonance imaging is a challenging task, partly due to the presence of false-positive connections and the misestimation of connection weights. Building on previous efforts, the MICCAI-CDMRI Diffusion-Simulated Connectivity (DiSCo) challenge was carried out to evaluate state-of-the-art connectivity methods using novel large-scale numerical phantoms. The diffusion signal for the phantoms was obtained from Monte Carlo simulations. The results of the challenge suggest that methods selected by the 14 teams participating in the challenge can provide high correlations between estimated and ground-truth connectivity weights, in complex numerical environments. Additionally, the methods used by the participating teams were able to accurately identify the binary connectivity of the numerical dataset. However, specific false positive and false negative connections were consistently estimated across all methods. Although the challenge dataset doesn't capture the complexity of a real brain, it provided unique data with known macrostructure and microstructure ground-truth properties to facilitate the development of connectivity estimation methods

The application of a new sampling theorem for non-bandlimited signals on the sphere: Improving the recovery of crossing fibers for low b-value acquisitions

Recent development in sampling theory now allows the sampling and reconstruction of certain non-bandlimited functions on the sphere, namely a sum of weighted Diracs. Because the signal acquired in diffusion Magnetic Resonance Imaging (dMRI) can be modeled as the convolution between a sampling kernel and two dimensional Diracs defined on the sphere, these advances have great potential in dMRI. In this work, we introduce a local reconstruction method for dMRI based on a new sampling theorem for non-bandlimited signals on the sphere. This new algorithm, named Spherical Finite Rate of Innovation (SFRI), is able to recover fibers crossing at very narrow angles with little dependence on the b-value. Because of its parametric formulation, SFRI can distinguish crossing fibers even when using a DTI-like acquisition (≈32 directions). This opens new perspective for low b-value and low number of gradient directions diffusion acquisitions and tractography studies. We evaluate the angular resolution of SFRI using state of the art synthetic data and compare its performance using in-vivo data. Our results show that, at low b-values, SFRI recovers crossing fibers not identified by constrained spherical deconvolution. We also show that low b-value results obtained using SFRI are similar to those obtained with constrained spherical deconvolution at a higher b-value

Lesion-robust white-matter bundle identification through diffusion driven label fusion

White-matter pathologies disrupt the white-matter organization, that manifests as deficits in brain function. When treating such pathologies, it is of great importance to infer which pathways are affected. However, the white-matter lesions hamper the use of tractography to track fiber bundles. In this work, leveraging diffusion imaging, we propose a novel diffusion-driven technique to improve the localization of brain pathways. Aggregating information from few healthy subjects, our technique is able to localize both the affected pathways and the lesion interrupting when tracking is not possible

Lesion-robust white-matter bundle identification through diffusion driven label fusion

White-matter pathologies disrupt the white-matter organization, that manifests as deficits in brain function. When treating such pathologies, it is of great importance to infer which pathways are affected. However, the white-matter lesions hamper the use of tractography to track fiber bundles. In this work, leveraging diffusion imaging, we propose a novel diffusion-driven technique to improve the localization of brain pathways. Aggregating information from few healthy subjects, our technique is able to localize both the affected pathways and the lesion interrupting when tracking is not possible

Tractography passes the test: Results from the diffusion-simulated connectivity (DiSCo) challenge

Estimating structural connectivity from diffusion-weighted magnetic resonance imaging is a challenging task, partly due to the presence of false-positive connections and the misestimation of connection weights. Building on previous efforts, the MICCAI-CDMRI Diffusion-Simulated Connectivity (DiSCo) challenge was carried out to evaluate state-of-the-art connectivity methods using novel large-scale numerical phantoms. The diffusion signal for the phantoms was obtained from Monte Carlo simulations. The results of the challenge suggest that methods selected by the 14 teams participating in the challenge can provide high correlations between estimated and ground-truth connectivity weights, in complex numerical environments. Additionally, the methods used by the participating teams were able to accurately identify the binary connectivity of the numerical dataset. However, specific false positive and false negative connections were consistently estimated across all methods. Although the challenge dataset doesn't capture the complexity of a real brain, it provided unique data with known macrostructure and microstructure ground-truth properties to facilitate the development of connectivity estimation methods

Author Correction: The challenge of mapping the human connectome based on diffusion tractography.

An amendment to this paper has been published and can be accessed via a link at the top of the paper

The challenge of mapping the human connectome based on diffusion tractography

Tractography based on non-invasive diffusion imaging is central to the study of human brain connectivity. To date, the approach has not been systematically validated in ground truth studies. Based on a simulated human brain data set with ground truth tracts, we organized an open international tractography challenge, which resulted in 96 distinct submissions from 20 research groups. Here, we report the encouraging finding that most state-of-the-art algorithms produce tractograms containing 90% of the ground truth bundles (to at least some extent). However, the same tractograms contain many more invalid than valid bundles, and half of these invalid bundles occur systematically across research groups. Taken together, our results demonstrate and confirm fundamental ambiguities inherent in tract reconstruction based on orientation information alone, which need to be considered when interpreting tractography and connectivity results. Our approach provides a novel framework for estimating reliability of tractography and encourages innovation to address its current limitations