Variations in agronomic and grain quality traits of rice grown under irrigated lowland conditions in West Africa

Rice breeding in West Africa has been largely skewed toward yield enhancement and stress tolerance. This has led to the variable grain quality of locally produced rice in the region. This study sought to assess variations in the agronomic and grain quality traits of some rice varieties grown in this region, with a view to identifying sources of high grain yield and quality that could serve as potential donors in their breeding programs. Forty‐five varieties were grown under irrigated conditions in Benin and Senegal with two trials in each country. There were wide variations in agronomic and grain quality traits among the varieties across the trials. Cluster analysis using paddy yield, head rice yield, and chalkiness revealed that 68% of the total variation could be explained by five varietal groupings. One group comprising seven varieties (Afrihikari, BG90‐2, IR64, Sahel 108, WAT311‐WAS‐B‐B‐23‐7‐1, WAT339‐TGR‐5‐2, and WITA 10) had high head rice yield and low chalkiness. Of the varieties in this group, Sahel 108 had the highest paddy yield in three of the four trials. IR64 and Afrihikari had intermediate and low amylose content, respectively, with the rest being high‐amylose varieties. Another group of varieties consisting of B6144F‐MR‐6‐0‐0, C74, IR31851‐96‐2‐3‐2‐1, ITA222, Jaya, Sahel 305, WITA 1, and WITA 2 had high paddy yield but poor head rice yield and chalkiness. The use of materials from these two groups of varieties could accelerate breeding for high yielding rice varieties with better grain quality for local production in West Africa

Molecular characterization of extended spectrum beta-lactamase among clinical multidrug resistant Escherichia Coli in two hospitals of Niamey, Niger

Objective: The aim of this study was to identify the multiple ESBL genes in Multidrug-resistant (MDR) Escherichia coli isolated in various biological samples in two hospitals of Niamey.Methodology: A total of 195 multidrug-resistant Escherichia coli were included in the study. These isolates were tested using polymerase chain reaction (PCR) for detection of the presence of bla CTX-M, bla TEM, bla SHV and bla OXA-1 beta-lactamase genes.Results: A total of 27.7% of Escherichia coli isolates were ESBL producing strains. Globaly, the bla TEM gene was the most prevalent (70.3%) followed by bla CTX-M (43.1%), bla OXA-1 (31.8%) and bla SHV (4.1%) genes. The four genes type of ESBL were founded simultaneously only in stool samples. Furthermore, none bla SHV gene was found in other samples type.Conclusion: This study showed the presence of various ESBL genes among clinical MDR Escherichia coli. That is why a rational use of antibiotic and appropriate methods of screening ESBL genes in routine laboratories in Niger is needed to control the ESBL genes dissemination.Keywords: MDR ,Escherichia coli, ESBL, bla genes, PCR, Niamey, Niger. Caracterisation moleculaire des betalactamases a spectre etendu chez les souches de Escherichia coli multi resistantes dans deux hopitaux de Niamey, au NigerObjectifs: Le but de cette étude était d'identifier les multiples gènes de BLSE chez les souches de Escherichia coli multi résistantes isolées de différents types d’échantillons biologiques dans deux hôpitaux de Niamey.Méthodologie : Un total de 195 Escherichia coli multi résistants a été inclus dans l'étude. Ces isolats ont été testés par la réaction de polymérase en chaîne (PCR) pour détecter la présence des gènes bla CTX-M, bla TEM, bla SHV et bla OXA-1.Résultats : Au total, 27,7% des isolats de Escherichia coli multi-résistants étaient des souches productrices de BLSE. Globalement le gène bla TEM (70,3%) était le plus détecté suivi des autres gènes bla CTX-M (43,1%), bla OXA-1 (31,8%) et bla SHV (4,1%). Notons que seul dans les échantillons de selles quatre types de gènes de BLSE ont été trouvés simultanément. Par ailleurs notons qu’aucun gène de type bla SHV n'a été trouvé dans les autres types d'échantillons.Conclusion : Cette étude avait montré la présence de divers gènes de BLSE chez les souches cliniques de Escherichia coli. C'est pourquoi une utilisation rationnelle des antibiotiques et des méthodes appropriées de dépistage des gènes de BLSE dans les laboratoires sont nécessaires afin de contrôler la diffusion des gènes de BLSE.Mots clés : Escherichia coli multi résistantes, BLSE, gènes bla, PCR, Niamey, Niger

Food Security in Crop, Livestock and Mixed Farming Systems in Mali

This study evaluates the food security status, its determinants and the coping strategies in crop, livestock and mixed crop-livestock systems in southern Mali. Interviews were conducted with 258 households that were categorized into the three farming systems based on the revenue from livestock and crop production. A linear mixed model was used to analyse the effects of household characteristics on food security using the food consumption score (FCS), household dietary diversity score (HDDS), a modified household food insecurity access scale (mHFIAS) and coping strategies as indicators. Food consumption score was significantly influenced by the farming system with highest FCS for the livestock system (88) followed by the mixed system (77) and the crop system (69). Moreover, FCS was positively influenced by the number of crops cultivated, total farm milk production, off-farm income and number of raised chickens (p \u3c 0.1). The main difference in food intake between systems was for milk with average daily consumption of 201 ml, 110 ml and 60 ml in the livestock, mixed and crop systems, respectively. HDDS was also significantly influenced by the farming system with highest HDDS values for the livestock system (8.9), followed by the mixed system (8.2) and the crop system (8.0). Further, HDDS was positively influenced by crop diversity and number of chickens, and negatively influenced by the number of family dependents. During the food shortage period of August, households from the crop system were more food insecure than households from the mixed and livestock systems with mHFIAS values of 0.9, 1.5 and 4.3, respectively. Livestock and mixed systems were more resilient to food insecurity situations than the crop system. This study confirms the direct effect of milk production on milk consumption and the importance of livestock for enhancing food security and livelihood resilience

Investigation of an outbreak of type 3 wild poliovirus in Cote d'Ivoire in 2011

Background: Côte d'Ivoire had no type 3 wild poliovirus (WPV3) outbreak since 1999. In 2011, the country was reinfected by WPV3. The objective of this study is to explore the reasons behind the occurrence of WPV3 outbreak in Côte d'Ivoire in 2011.Method: Data on WPV3 cases were obtained from specific investigation records during the outbreak investigation. Data on AFP cases was obtained from AFP routine investigation forms. Information on polio immunization was extracted from National EPI databases and documents. Univariate analyses were done to summarize characteristics of AFP and WPV3 cases. Bivariate and multivariable analyses were done to compare polio cases to non-polio AFP cases. Finally, the proportion of non-vaccinated children in routine immunization from 2006 to 2010 was calculated.Results: In the Côte d'Ivoire outbreak, from January to July 2011, 36 WPV3 cases were notified. The median age was two years old (interquartile range two to four years old). Among these cases, 29 had received less than three polio vaccine doses. The majority of WPV3 cases were living in precarious socio-economic conditions. Regarding vaccination status of AFP cases, the polio cases had a statistically significant higher risk to have less than three doses of polio vaccine compared to non-polio cases, OR: 16.9 [95% CI: 2.3 – 125.0]. More than 27% of the children of less than one year old who were expected to be vaccinated in the country were not vaccinated from 2006 to 2010.Conclusion: Despite the limitations, this study shows that a country that has interrupted polio transmission for one type of poliovirus can still be at high risk for polio outbreaks of this same type following an importation. This can occur when routine immunization coverage is low, polio supplementary immunization activities are done with only the poliovirus vaccine against the circulating poliovirus, people live in precarious socio-economic conditions and AFP surveillance is poorly performed. Côte d'Ivoire experienced this outbreak as many of these conditions occurred together.Keywords: Wild poliovirus, epidemic, occurrence, Côte d'Ivoir

Evolution of African cassava mosaic virus by recombination between bipartite and monopartite begomoviruses

<p>Abstract</p> <p>Background</p> <p>Cassava mosaic disease (CMD) is a major constraint on cassava cultivation in Africa. The disease is endemic and is caused by seven distinct cassava mosaic geminiviruses (CMGs), some of them including several variants.</p> <p>Findings</p> <p>From cassava leaf samples presenting CMD symptoms collected in Burkina Faso, four DNA-A begomovirus components were cloned and sequenced, showing 99.9% nucleotide identity among them. These isolates are most closely related to <it>African cassava mosaic virus </it>(ACMV) but share less than 89% nucleotide identity (taxonomic threshold) with any previously described begomovirus. A DNA-B genomic component, sharing 93% nucleotide identity with DNA-B of ACMV, was also characterized. Since all genomic components have a typical genome organization of Old World bipartite begomoviruses, this new species was provisionally named African cassava mosaic Burkina Faso virus (ACMBFV). Recombination analysis of the new virus demonstrated an interspecies recombinant origin, with major parents related to West African isolates of ACMV, and minor parents related to <it>Tomato leaf curl Cameroon virus </it>and <it>Cotton leaf curl Gezira virus</it>.</p> <p>Conclusion</p> <p>This is the first report of an ACMV-like recombinant begomovirus arisen by interspecific recombination between bipartite and monopartite African begomoviruses.</p

RECRUDESCENCE OF ONCHOCERCIASIS IN THE COMOÉ VALLEY IN SOUTHWEST BURKINA FASO.

: Onchocerciasis control by vector control was instigated in southwest Burkina Faso in January 1969 by ORSTOM/OCCGE, and continued until operations were taken over by the WHO Onchocerciasis Control Programme (OCP) in February 1975, which itself ceased operations in the area in 1989 when onchocerciasis was judged to have been reduced to insignificant levels. Initially (1969-1975) vector immigration maintained unacceptably high levels of transmission, but OCP was much larger than the preceding campaign and in 1975 the Annual Transmission Potential (ATP) dropped below 100 at all sites in the Comoé river valley except Folonzo, which continued to be subject to reinvasion, along with the whole of the Léraba river valley. However, after the southern extension of the OCP in 1979, ATPs dropped below 100 everywhere in the Comoé basin (including the Léraba valley), and further dropped to insignificant levels after the western extension of the OCP in 1985. Thus transmission dropped more quickly in the Comoé river valley than the Léraba river valley (which had been subject to vector reinvasion), and this was also reflected in prevalence of microfilaraemia in the human population. After 1986 prevalence was less than 5% in all villages in the Comoé river valley (except for two, which subsequently dropped to 0% and 3.7% by 1999). However, in 2001 (12 years after the cessation of vector control) the prevalence in one village in the Comoé river valley had increased to 39.6%, and two more had increased above 5% by 2007. New epidemiological surveys in 2011 and 2012 showed that in 13 out of 30 villages in the Comoé river valley prevalence of microfilaraemia was above 5%, although this was not observed in the Léraba river valley where prevalence remained low. This is the first documented case of recrudescence of onchocerciasis in the old OCP area, and the reasons are not clear. It is possible that there has been immigration of parasites with humans or vectors from areas where there has been a shorter period of control, or that control has been less effective. It is possible that in spite of very low levels of transmission the local parasite population was never reduced to a level below the transmission breakpoint, or that there has been a local recrudescence due to stochastic population effects. In any case it is clear that the distribution of ivermectin against lymphatic filariasis in the area since 2004 has failed to prevent the recrudescence of onchocerciasis, and the Burkina Faso Programme National de Lutte contre l'Onchocercose (PNLO - Ministere de la Santé) has instigated a programme of Community Directed Treatment with Ivermectin specifically aimed at onchocerciasis in accordance with the strategy developed by APOC and recommended to governments by OCP when it was dissolved in 2002.<br/

Livestock keepers’ attitudes: Keystone of effective community-based breeding programs

Livestock keepers in southwestern Burkina Faso hold the local Lobi taurine breed, local Zebu cattle, and their crosses. Some communities in the region have begun to implement community-based cattle breeding programs (CBBPs), which involve animal tagging and recording and, potentially, also bull sharing. Based on the hypothesis that the participation of livestock keepers in CBBPs depends on their attitudes towards these programs, we used questionnaires to survey the attitudes of 125 farmers towards cattle breeding strategies and tools. Results were analyzed using principal component analysis. Farmers showed a highly positive attitude towards maintaining the features of their preferred cattle breed, but their attitudes varied substantially towards crossbreeding for breed improvement. Farmers generally agreed that performance was more important than animal appearance, and most of them were willing to cooperate with breeders’ associations but were skeptical about sharing their bulls with other farmers. The majority was reluctant to record performance data, which may be due to a capacity deficit and their confidence in being able to select the best animals based purely on phenotype. Our analysis suggests that breeders’ associations, as a key component of CBBPs, should lay down clear rules and obligations for their members from the outset. Timely consideration of farmers’ attitudes towards different breeding tools may improve their uptake and guarantee the sustainability of CBBPs

Characteristics of Jatropha Oil and Prospective for its Valorization as Feedstock for the Development of Biodiesel Technology in Guinea

The continuous depletion of fossil fuel and petroleum products, their limited resources and environment concerns are a matter of concern. The tendency in energy sector represents a challenge as well as an opportunity to look for alternatives of fossil fuels for sustainable development and environmental benefits. Study of biodiesel has become a key objective in the effort towards energy self-reliance. Since Jatropha oil cannot be used in the food industry, its use as energy source becomes very attractive. Before oil extraction, 1000-seed weight of Jatropha was investigated on the point of view of temperature and rainfalls. Seeds were grounded and defatted by extraction using a Soxhlet device. The lipid fraction of Jatropha oil seed were extracted and analyzed for their chemical composition and properties. The content of fatty acid in the extracted lipid was determined by use of Gas Chromatography (GC). Oleic acid (44.7%) and Oinoleic acid (32.8%) represent the dominant fatty acids while palmitic and stearic ones were the saturated fatty acids in the Jatropha oil. The crude oil from an average sample was transformed into biodiesel by transesterification in which a primary alcohol replaces glycerol from crude oil molecules