Zoogloea oleivorans sp. nov., a floc-forming, petroleum hydrocarbon-degrading bacterium isolated from biofilm

A floc-forming, Gram-stain-negative, petroleum hydrocarbon-degrading bacterial strain, designated BucT, was isolated from a petroleum hydrocarbon-contaminated site in Hungary. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain BucT formed a distinct phyletic lineage within the genus Zoogloea. Its closest relative was found to be Zoogloea caeni EMB43T (97.2% 16S rRNA gene sequence similarity) followed by Zoogloea oryzae A-7T (95.9 %), Zoogloea ramigera ATCC 19544T (95.5 %) and Zoogloea resiniphila DhA-35T (95.4 %). The level of DNA–DNA relatedness between strain BucT and Z. caeni EMB43T was 31.6 %. Cells of strain BucT are facultatively aerobic, rod-shaped, and motile by means of a polar flagellum. The strain grew at temperatures of 5–35 6C (optimum 25–28 6C), and at pH 6.0–9.0 (optimum 6.5–7.5). The predominant fatty acids were C16 : 0, C10 : 0 3-OH, C12 : 0 and summed feature 3 (C16 : 1v7c and/or iso-C15 : 0 2-OH). The major respiratory quinone was ubiquinone-8 (Q-8) and the predominant polar lipid was phosphatidylethanolamine. The genomic DNA G+C content was 63.2 mol%. On the basis of the chemotaxonomic, molecular and phenotypic data, isolate BucT is considered to represent a novel species of the genus Zoogloea, for which the name Zoogloea oleivorans sp. nov. is proposed. The type strain is BucT (5DSM 28387T5NCAIM B 02570T)

First isolation of carbapenem-resistant Acinetobacter beijerinckii from an environmental sample

The emergence of opportunistic Acinetobacter spp. in healthcare settings poses a significant threat to public health. The major reasons for nosocomial spread of these species are their abilities to develop and transfer drug resistance against various classes of antibiotics. Considering that Acinetobacter spp. are ubiquitous in nature, can utilize several carbon sources, and reach humans via various pathways, our aim was to obtain information about the environmental strains of this genus. Our first step was to develop and test a multistep isolation procedure based on traditional scientific methods. Antibiotic resistance patterns of the isolated strains were determined, as susceptibility to 12 antibiotics of 7 classes was tested by MIC Test Strip method. Altogether 366 samples (groundwater, surface water, and soil) of 24 sites were investigated and a collection of 37 Acinetobacter isolates was obtained. Among others, clinically important human pathogen Acinetobacter spp., such as A. baumannii, A. johnsonii, and A. gyllenbergii were identified. Three environmental strains were determined as multidrug-resistant including a carbapenem-resistant, hemolytic Acinetobacter beijerinckii strain isolated from a hydrocarbon-contaminated groundwater sample. In summary, it has been found that the applied multistep isolation procedure is applicable to isolate various species of Acinetobacter genus. Based on the antibiotic resistance assay, we can conclude that environmental representatives of Acinetobacter spp. are able to develop multidrug resistance, but at a lower rate than their clinical counterparts

Aflatoxigenic Aspergillus flavus and Aspergillus parasiticus strains in Hungarian maize fields

Due to the climate change, aflatoxigenic Aspergillus species and strains have appeared in several European countries, contaminating different agricultural commodities with aflatoxin. Our aim was to screen the presence of aflatoxigenic fungi in maize fields throughout the seven geographic regions of Hungary. Fungi belonging to Aspergillus section Flavi were isolated in the ratio of 26.9% and 42.3% from soil and maize samples in 2013, and these ratios decreased to 16.1% and 34.7% in 2014. Based on morphological characteristics and the sequence analysis of the partial calmodulin gene, all isolates proved to be Aspergillus flavus, except four strains, which were identified as Aspergillus parasiticus. About half of the A. flavus strains and all the A. parasiticus strains were able to synthesize aflatoxins. Aflatoxigenic Aspergillus strains were isolated from all the seven regions of Hungary. A. parasiticus strains were found in the soil of the regions Southern Great Plain and Southern Transdanubia and in a maize sample of the region Western Transdanubia. In spite of the fact that aflatoxins have rarely been detected in feeds and foods in Hungary, aflatoxigenic A. flavus and A. parasiticus strains are present in the maize culture throughout Hungary posing a potential threat to food safety

Stable isotope probing of hypoxic toluene degradation at the Siklós aquifer reveals prominent role of Rhodocyclaceae

The availability of oxygen is often a limiting factor for the degradation of aromatic hydrocarbons in subsurface environments. However, while both aerobic and anaerobic degraders have been intensively studied, degradation betwixt, under micro- or hypoxic conditions has rarely been addressed. It is speculated that in environments with limited, but sustained oxygen supply, such as in the vicinity of groundwater monitoring wells, hypoxic degradation may take place. A large diversity of subfamily I.2.C extradiol dioxygenase genes has been previously detected in a BTEX-contaminated aquifer in Hungary. Older literature suggests that such catabolic potentials could be associated to hypoxic degradation. Bacterial communities dominated by members of the Rhodocyclaceae were found, but the majority of the detected C23O genotypes could not be affiliated to any known bacterial degrader lineages. To address this, a stable isotope probing (SIP) incubation of site sediments with 13C7-toluene was performed under microoxic conditions. A combination of 16S rRNA gene amplicon sequencing and T-RFLP fingerprinting of C23O genes from SIP gradient fractions revealed the central role of degraders within the Rhodocyclaceae in hypoxic toluene degradation. The main assimilators of 13C were identified as members of the genera Quatrionicoccus and Zoogloea, and a yet uncultured group of the Rhodocyclaceae

Effect of Composting on the Behavior of Polyolefin Films - A True-to-Life Experiment

Commercial polypropylene (PP), high-, medium- and low density polyethylene (HDPE, MDPE, LDPE) films, as well as MDPE films containing pro-oxidative additives and thermoplastic starch (TPS) were composted for six weeks together with biologically degradable films, such as poly (lactic acid) (PLA), Ecovio (BASF), Mater Bi(Novamont) and cellophane. Visual appearance of the polyolefin-based films did not change significantly, while the biologically degradable films fell apart. Thickness and mechanical properties of the polyolefin-based films also did not vary significantly after composting. The thickness of the degradable films however increased due to biofilm formation and finally decreased due to biodegradation, and their mechanical properties drastically dropped. FTIR proved the formation of carbonyl absorption of commercial and of the additive-containing films respectively) after composting due to oxidation. The FTIR-spectrum of the biodegradable films showed drastic change after composting. Formation of free radicals was detectable by ESR-spectroscopy, if pro-oxidative additive containing MDPE film was exposed for one week to sunlight, and the intensity of free radical formation increased after composting. The number-average molecular mass of MDPE films containing pro-oxidative additives decreased, low molecular mass fractions appeared and polydispersity increased after composting. Commercial polyolefin films were covered by microorganisms much more densly than films containing pro-oxidative additives detected by SEM. Even TPS did not increase the quantity of microorganisms. Biodegradable films were densly covered by microorganisms of different types and they became porous and holes were observable on their surface. It can be concluded that composting had no significant effect on the behaviour of the commercial PP and PE films. Signs of initial degradation were observable on MDPE films with pro-oxidative additives and TPS after 6 weeks composting, although it cannot be considered as biological degradation. Non of the tested polyolefin films suffered such degree of degradation in compost, as the biologically degradable films. It may be concluded that polyolefin films neither degrade in compost nor they undergo biodegradation