Automated quantitative analysis of single and double label autoradiographs

A method for the analysis of silver grain content in both single and double label autoradiographs is presented. The total grain area is calculated by counting the number of pixels at which the recorded light intensity in transmission dark field illumination exceeds a selected threshold. The calibration tests included autoradiographs with low (3H- thymidin) and high (3H-desoxyuridin) silver grain density. The results are proportional to the customary visual grain count. For the range of visibly countable grain densities in single labeled specimens, the correlation coefficient between the computed values and the visual grain counts is better than 0.96. In the first emulsion of the two emulsion layer autoradiographs of double labeled specimens (3H-14C- thymidin) the correlation coefficient is 0.919 and 0.906. The method provides a statistical correction for the background grains not due to the isotope. The possibility to record 14C tracks by shifting the focus through the second emulsion of the double labeled specimens is also demonstrated. The reported technique is essentially independent of size, shape and density of the grains

Effect of glutamine and arginine on growth of Hibiscus moscheutos “in vitro”

Nitrogen is the most essential element for plant growth and development. Amino acids, serving as the main organic nitrogen source in tissue culture media, provide for shoot and root elongation. Glutamine has been widely used in tissue culture for dedifferentiation and re-differentiation processes. Experiments were conducted to assess the effects of glutamine in comparison to some commonly used plant growth regulators (PGRs) on the growth of Hibiscus moscheutos propagated via tissue culture. An initial study suggested that 10 mg L-1 glutamine in MS basal medium was optimal for shoot elongation. At this optimal rate, glutamine showed superiority over other PGRs. No difference was found between glutamine treatments and the control in a later study. When comparing glutamine with arginine, shoots cultured on media with arginine displayed slightly greater growth. With arginine containing two extra nitrogen groups in its molecular structure, the higher percentage of nitrogen may have resulted in improved growth

Flower, Fruit, and Petiole Color of American Beautyberry (Callicarpa americana L.) Are Controlled by a Single Gene with Three Alleles

American beautyberry (Callicarpa americana) is a deciduous shrub native to the southeast U. S. and is grown primarily for its metallic-purple fruit that develop in the fall. There are also pink- and white-fruiting and variegated forms but these traits are rare in nature and there is no information available regarding their inheritance. Also, there is confusion regarding self-compatibility and the presence of apomixis in Callicarpa L. Crosses were performed to investigate the genetics of fruit color, self-compatibility, and apomixis in american beautyberry. Test crosses between C. americana (CA) and C. americana ‘Lactea’ (CAL) suggested that white fruit is recessive to purple. White fruit appears to be controlled by a single recessive gene for which we propose the name white fruit and the gene symbol wft. Although there were only a limited number of progeny grown, crosses between CA and ‘Welch’s Pink’ suggest that purple is dominant to pink. Test crosses between CAL and ‘Welch’s Pink’ are needed to draw conclusions; however, we propose that purple, pink, and white fruit are controlled by an allelic series for which we suggest the gene symbols Wft > wft [superscript p] > wft. Segregation ratios suggested that all progeny in the study developed through sexual hybridization. All genotypes used in the current study were self-compatible.This is an author's peer-reviewed final manuscript, as accepted by the publisher. The published article is copyrighted by the American Society for Horticultural Science and can be found at: http://hortsci.ashspublications.org/.Keywords: Apomixis, Pleiotropy, Mendelian inheritance, Self-compatibl

Redirection of SKN-1 abates the negative metabolic outcomes of a perceived pathogen infection

Early host responses toward pathogens are essential for defense against infection. In Caenorhabditis elegans, the transcription factor, SKN-1, regulates cellular defenses during xenobiotic intoxication and bacterial infection. However, constitutive activation of SKN-1 results in pleiotropic outcomes, including a redistribution of somatic lipids to the germline, which impairs health and shortens lifespan. Here, we show that exposing C. elegans to Pseudomonas aeruginosa similarly drives the rapid depletion of somatic, but not germline, lipid stores. Modulating the epigenetic landscape refines SKN-1 activity away from innate immunity targets, which alleviates negative metabolic outcomes. Similarly, exposure to oxidative stress redirects SKN-1 activity away from pathogen response genes while restoring somatic lipid distribution. In addition, activating p38/MAPK signaling in the absence of pathogens, is sufficient to drive SKN-1-dependent loss of somatic fat. These data define a SKN-1- and p38-dependent axis for coordinating pathogen responses, lipid homeostasis, and survival and identify transcriptional redirection, rather than inactivation, as a mechanism for counteracting the pleiotropic consequences of aberrant transcriptional activity

Energy Flow in the Hadronic Final State of Diffractive and Non-Diffractive Deep-Inelastic Scattering at HERA

An investigation of the hadronic final state in diffractive and non--diffractive deep--inelastic electron--proton scattering at HERA is presented, where diffractive data are selected experimentally by demanding a large gap in pseudo --rapidity around the proton remnant direction. The transverse energy flow in the hadronic final state is evaluated using a set of estimators which quantify topological properties. Using available Monte Carlo QCD calculations, it is demonstrated that the final state in diffractive DIS exhibits the features expected if the interaction is interpreted as the scattering of an electron off a current quark with associated effects of perturbative QCD. A model in which deep--inelastic diffraction is taken to be the exchange of a pomeron with partonic structure is found to reproduce the measurements well. Models for deep--inelastic $ep$ scattering, in which a sizeable diffractive contribution is present because of non--perturbative effects in the production of the hadronic final state, reproduce the general tendencies of the data but in all give a worse description.Comment: 22 pages, latex, 6 Figures appended as uuencoded fil

Strain-induced pseudomagnetic field and Landau levels in photonic structures

Magnetic effects at optical frequencies are notoriously weak. This is evidenced by the fact that the magnetic permeability of nearly all materials is unity in the optical frequency range, and that magneto-optical devices (such as Faraday isolators) must be large in order to allow for a sufficiently strong effect. In graphene, however, it has been shown that inhomogeneous strains can induce 'pseudomagnetic fields' that behave very similarly to real fields. Here, we show experimentally and theoretically that, by properly structuring a dielectric lattice, it is possible to induce a pseudomagnetic field at optical frequencies in a photonic lattice, where the propagation dynamics is equivalent to the evolution of an electronic wavepacket in graphene. To our knowledge, this is the first realization of a pseudomagnetic field in optics. The induced field gives rise to multiple photonic Landau levels (singularities in the density of states) separated by band gaps. We show experimentally and numerically that the gaps between these Landau levels give rise to transverse confinement of the optical modes. The use of strain allows for the exploration of magnetic effects in a non-resonant way that would be otherwise inaccessible in optics. Employing inhomogeneous strain to induce pseudomagnetism suggests the possibility that aperiodic photonic crystal structures can achieve greater field-enhancement and slow-light effects than periodic structures via the high density-of-states at Landau levels. Generalizing these concepts to other systems beyond optics, for example with matter waves in optical potentials, offers new intriguing physics that is fundamentally different from that in purely periodic structures.Comment: 24 pages including supplementary information section, 4 figure

Importance of dose-schedule of 5-aza-2'-deoxycytidine for epigenetic therapy of cancer

<p>Abstract</p> <p>Background</p> <p>The inactivation of tumor suppressor genes (TSGs) by aberrant DNA methylation plays an important role in the development of malignancy. Since this epigenetic change is reversible, it is a potential target for chemotherapeutic intervention using an inhibitor of DNA methylation, such as 5-aza-2'-deoxycytidine (DAC). Although clinical studies show that DAC has activity against hematological malignancies, the optimal dose-schedule of this epigenetic agent still needs to be established.</p> <p>Methods</p> <p>Clonogenic assays were performed on leukemic and tumor cell lines to evaluate the <it>in vitro </it>antineoplastic activity of DAC. The reactivation of TSGs and inhibition of DNA methylation by DAC were investigated by reverse transcriptase-PCR and Line-1 assays. The <it>in vivo </it>antineoplastic activity of DAC administered as an i.v. infusion was evaluated in mice with murine L1210 leukemia by measurement of survival time, and in mice bearing murine EMT6 mammary tumor by excision of tumor after chemotherapy for an <it>in vitro </it>clonogenic assay.</p> <p>Results</p> <p>Increasing the DAC concentration and duration of exposure produced a greater loss of clonogenicity for both human leukemic and tumor cell lines. The reactivation of the TSGs (<it>p57KIP2 </it>in HL-60 leukemic cells and <it>p16CDKN2A </it>in Calu-6 lung carcinoma cells) and the inhibition of global DNA methylation in HL-60 leukemic cells increased with DAC concentration. In mice with L1210 leukemia and in mice bearing EMT6 tumors, the antineoplastic action of DAC also increased with the dose. The plasma level of DAC that produced a very potent antineoplastic effect in mice with leukemia or solid tumors was > 200 ng/ml (> 1 μM).</p> <p>Conclusion</p> <p>We have shown that intensification of the DAC dose markedly increased its antineoplastic activity in mouse models of cancer. Our data also show that there is a good correlation between the concentrations of DAC that reduce <it>in vitro </it>clonogenicity, reactivate TSGs and inhibit DNA methylation. These results suggest that the antineoplastic action of DAC is related to its epigenetic action. Our observations provide a strong rationale to perform clinical trials using dose intensification of DAC to maximize the chemotherapeutic potential of this epigenetic agent in patients with cancer.</p

A series of Fas receptor agonist antibodies that demonstrate an inverse correlation between affinity and potency

Receptor agonism remains poorly understood at the molecular and mechanistic level. In this study, we identified a fully human anti-Fas antibody that could efficiently trigger apoptosis and therefore function as a potent agonist. Protein engineering and crystallography were used to mechanistically understand the agonistic activity of the antibody. The crystal structure of the complex was determined at 1.9 Å resolution and provided insights into epitope recognition and comparisons with the natural ligand FasL (Fas ligand). When we affinity-matured the agonist antibody, we observed that, surprisingly, the higher-affinity antibodies demonstrated a significant reduction, rather than an increase, in agonist activity at the Fas receptor. We propose and experimentally demonstrate a model to explain this non-intuitive impact of affinity on agonist antibody signalling and explore the implications for the discovery of therapeutic agonists in general