Genome of Herbaspirillum seropedicae Strain SmR1, a Specialized Diazotrophic Endophyte of Tropical Grasses

The molecular mechanisms of plant recognition, colonization, and nutrient exchange between diazotrophic endophytes and plants are scarcely known. Herbaspirillum seropedicae is an endophytic bacterium capable of colonizing intercellular spaces of grasses such as rice and sugar cane. The genome of H. seropedicae strain SmR1 was sequenced and annotated by The Paraná State Genome Programme—GENOPAR. The genome is composed of a circular chromosome of 5,513,887 bp and contains a total of 4,804 genes. The genome sequence revealed that H. seropedicae is a highly versatile microorganism with capacity to metabolize a wide range of carbon and nitrogen sources and with possession of four distinct terminal oxidases. The genome contains a multitude of protein secretion systems, including type I, type II, type III, type V, and type VI secretion systems, and type IV pili, suggesting a high potential to interact with host plants. H. seropedicae is able to synthesize indole acetic acid as reflected by the four IAA biosynthetic pathways present. A gene coding for ACC deaminase, which may be involved in modulating the associated plant ethylene-signaling pathway, is also present. Genes for hemagglutinins/hemolysins/adhesins were found and may play a role in plant cell surface adhesion. These features may endow H. seropedicae with the ability to establish an endophytic life-style in a large number of plant species

Rationale, study design, and analysis plan of the Alveolar Recruitment for ARDS Trial (ART): Study protocol for a randomized controlled trial

Background: Acute respiratory distress syndrome (ARDS) is associated with high in-hospital mortality. Alveolar recruitment followed by ventilation at optimal titrated PEEP may reduce ventilator-induced lung injury and improve oxygenation in patients with ARDS, but the effects on mortality and other clinical outcomes remain unknown. This article reports the rationale, study design, and analysis plan of the Alveolar Recruitment for ARDS Trial (ART). Methods/Design: ART is a pragmatic, multicenter, randomized (concealed), controlled trial, which aims to determine if maximum stepwise alveolar recruitment associated with PEEP titration is able to increase 28-day survival in patients with ARDS compared to conventional treatment (ARDSNet strategy). We will enroll adult patients with ARDS of less than 72 h duration. The intervention group will receive an alveolar recruitment maneuver, with stepwise increases of PEEP achieving 45 cmH(2)O and peak pressure of 60 cmH2O, followed by ventilation with optimal PEEP titrated according to the static compliance of the respiratory system. In the control group, mechanical ventilation will follow a conventional protocol (ARDSNet). In both groups, we will use controlled volume mode with low tidal volumes (4 to 6 mL/kg of predicted body weight) and targeting plateau pressure <= 30 cmH2O. The primary outcome is 28-day survival, and the secondary outcomes are: length of ICU stay; length of hospital stay; pneumothorax requiring chest tube during first 7 days; barotrauma during first 7 days; mechanical ventilation-free days from days 1 to 28; ICU, in-hospital, and 6-month survival. ART is an event-guided trial planned to last until 520 events (deaths within 28 days) are observed. These events allow detection of a hazard ratio of 0.75, with 90% power and two-tailed type I error of 5%. All analysis will follow the intention-to-treat principle. Discussion: If the ART strategy with maximum recruitment and PEEP titration improves 28-day survival, this will represent a notable advance to the care of ARDS patients. Conversely, if the ART strategy is similar or inferior to the current evidence-based strategy (ARDSNet), this should also change current practice as many institutions routinely employ recruitment maneuvers and set PEEP levels according to some titration method.Hospital do Coracao (HCor) as part of the Program 'Hospitais de Excelencia a Servico do SUS (PROADI-SUS)'Brazilian Ministry of Healt

In-situ microstructural observation of Ti-Cu alloys for semi-solid processing

The semi-solid processing of metallic alloys strongly depends on the microstructural features exhibited by the raw material. Consequently, many characterization techniques have been used to elucidate semi-solid microstructures. In the present work, high-temperature laser-scanning confocal microscopy (HT-LSCM) was used to characterize Ti-Cu alloys intended for thixoforming. During the reheating stage, this in-situ technique enabled us to observe the Ti-β grains formed through the reverse eutectoid transformation. Furthermore, the results showed that thermomechanical treatment was primarily responsible for breaking up the dendritic microstructure. The liquid formation and peritectic temperature were easily determined via the HT-LSCM investigation. Prior to the reverse peritectic reaction, which corresponds to the onset of equilibrium melting, we obtained experimental evidence of the melting of non-equilibrium phases that originated via segregation during solidification. Finally, it was possible to qualitatively study the coarsening mechanisms that occurred in the semi-solid state. Irrespective of the alloy composition (liquid fraction), both Ostwald ripening and coalescence occurred during the isothermal heat treatments. Based on the obtained results, HT-LCSM can be considered a valuable technique for the characterization of thixotropic alloys

Exploring the Ti-5553 phase transformations utilizing in-situ high-temperature laser-scanning confocal microscopy

2019 Elsevier Inc. Recently, the β metastable Ti-5553 alloy has attracted significant interest owing to the possibility of achieving excellent mechanical properties. In this study, for the first time, the Ti-5553 phase transformations were investigated using high-temperature laser-scanning confocal microscopy (HT-LSCM). During the continuous heating of an aged sample, the α phase dissolution was not clearly visible owing to the remaining grooves of former grain and interphase boundaries. However, the continuous cooling experiments (from the β field) showed that the α phase precipitation started preferentially at grain boundaries. With the increase in cooling rate, the α precipitates became more refined and the supercooling necessary to promote allotriomorphic precipitation increased. At a cooling rate of 100 °C min−1, no α phase was observed in the analyzed field of view. A higher oxygen content was suggested to contribute to the microstructural differences between the free surface and bulk. The volume fraction of the α phase was lower than that obtained on the original surface at cooling rates of 5, 25, and 50 °C min−1, while only minor differences were observed at cooling rates of 100 and 250 °C min−1. The α phase precipitation was analyzed in detail. The HT-LSCM technique can be a useful method for the analyses of solid-state phase transformations in Ti alloys

Residual effects of successive exposure of soybean Bradyrhizobium strains to aluminium on solid defined medium

The aim of these studies was to investigate whether residual toxic effects of exposing soybean root nodule bacteria to Al in a solid defined media (SDM) alter tolerance to Al, survival, sensitivity to antibiotics, N2 fixation effectiveness and genetic diversity of Bradyrhizobium strains. After being exposed four times to Al, strains showed variation in Al tolerance but there was no evidence of change in their original Al tolerance, sensitivity to the antibiotics or genetic diversity. Exposure of Bradyrhizobium strains to SDM plus Al did not alter biological N2 fixation effectiveness of five strains. Strain SEMIA 587 showed a reduction in its N2 fixation effectiveness but it seems that it was just a superficial toxic effect because one single passage through the plant eliminated this effect. Residual Al did not cause increases in Al tolerance and reductions in the survival and N2 fixation effectiveness of Bradyrhizobium strains USDA 143, SEMIA 586, SEMIA 5019, SEMIA 5039 and SEMIA 5073. It also did not alter the resistance to antibiotics of strains USDA 143, SEMIA 5039 and SEMIA 5073, and the genetic diversity of the strains SEMIA 587 and SEMIA 5019

Conjunto mínimo de parâmetros para avaliação da microbiota do solo e da fixação biológica do nitrogênio pela soja Minimal set of parameters for evaluation soil microbiota and biological nitrogen fixation in soybean

O objetivo deste trabalho foi avaliar e validar um conjunto mínimo de parâmetros para o monitoramento, em campo, da microbiota do solo e da fixação biológica do N2 (FBN) pela soja. Os ensaios foram conduzidos em áreas de plantios comerciais (safra 2002/2003) e experimentais (safra 2004/2005), em blocos ao acaso. O C e o N da biomassa microbiana (CBM e NBM) mostraram-se adequados para a avaliação quantitativa da microbiota do solo e ambos os parâmetros foram correlacionados significativamente, portanto, apenas um deles precisa ser determinado. Foram obtidas correlações positivas e significativas entre a massa da parte aérea seca das plantas (MPAS) e o CBM e o NBM. A análise do DNA total do solo por eletroforese em géis desnaturantes (DGGE) detectou alterações qualitativas na microbiota do solo, relacionadas à homogeneidade da área e a diferenças entre tratamentos, áreas e coletas. A massa de nódulos secos (MNS) foi o melhor parâmetro para a avaliação da nodulação. Correlações significativas foram constatadas entre a MPAS e o N total acumulado na parte aérea (NTPA). Resultados semelhantes foram observados entre a MPAS e o N de ureídos (NTU). O monitoramento da FBN pela soja pode ser realizado apenas pela determinação da MNS e da MPAS.<br>The objective of this work was to evaluate and validate a minimum set of parameters capable of monitoring, under field conditions, soil microbes and/or the biological N2 fixation process with the soybean crop. The field trials were performed in commercial fields (2002/2003) and experimental areas (2004/2004), with complete randomized blocks design. Microbial biomass C (MBC) and N (MBN) were adequate for the quantitative evaluation of soil microbes; the parameters were significantly correlated therefore the determination of only one of them is sufficient. Positive and significant correlations were also obtained between the parameters of shoot dry weight (SDW) and MBC and MBN. The analysis of total soil DNA by the denaturating gradient gel electrophoresis method (DGGE) detected qualitative changes in soil microbes, related to the homogeneity of the area, as well as to differences among treatments, areas and harvests. Nodule dry weight (NDW) was the most suitable parameter for the evaluation of nodulation. Significant correlations were obtained between the SDW and the total N accumulated in shoots (TNS). Similar results were obtained between SDW and total N-ureides (TNU). Monitoring of the symbiosis in soils traditionally cropped with soybean and poor on N may be achieved only by the determination of NDW and SDW