951 research outputs found
Conformations of dendrimers in dilute solution
Conformations of isolated homo- dendrimers of G=1-7 generations with D=1-6
spacers have been studied in the good and poor solvents, as well as across the
coil-to-globule transition, by means of a version of the Gaussian
self-consistent (GSC) method and Monte Carlo (MC) simulation in continuous
space based on the same coarse-grained model. The latter includes harmonic
springs between connected monomers and the pair-wise Lennard-Jones potential
with a hard core repulsion. The scaling law for the dendrimer size, the degrees
of bond stretching and steric congestion, as well as the radial density, static
structure factor, and asphericity have been analysed. It is also confirmed that
while smaller dendrimers have a dense core, larger ones develop a hollow domain
at some separation from the centre.Comment: RevTeX, 14 pages, 19 PS figures, Accepted for publication in J. Chem.
Phy
Rigidity of silicone substrates controls cell spreading and stem cell differentiation.
The dependences of spreading and differentiation of stem cells plated on hydrogel and silicone gel substrates on the rigidity and porosity of the substrates have recently been a subject of some controversy. In experiments on human mesenchymal stem cells plated on soft, medium rigidity, and hard silicone gels we show that harder gels are more osteogenic, softer gels are more adipogenic, and cell spreading areas increase with the silicone gel substrate rigidity. The results of our study indicate that substrate rigidity induces some universal cellular responses independently of the porosity or topography of the substrate
Monte Carlo simulations of infinitely dilute solutions of amphiphilic diblock star copolymers
Single-chain Monte Carlo simulations of amphiphilic diblock star copolymers
were carried out in continuous space using implicit solvents. Two distinct
architectures were studied: stars with the hydrophobic blocks attached to the
core, and stars with the polar blocks attached to the core, with all arms being
of equal length. The ratio of the lengths of the hydrophobic block to the
length of the polar block was varied from 0 to 1. Stars with 3, 6, 9 or 12
arms, each of length 10, 15, 25, 50, 75 and 100 Kuhn segments were analysed.
Four distinct types of conformations were observed for these systems. These,
apart from studying the snapshots from the simulations, have been
quantitatively characterised in terms of the mean-squared radii of gyration,
mean-squared distances of monomers from the centre-of-mass, asphericity
indices, static scattering form factors in the Kratky representation as well as
the intra-chain monomer-monomer radial distribution functions.Comment: 12 pages, 11 ps figures. Accepted for publication in J. Chem. Phy
Intra-chain correlation functions and shapes of homopolymers with different architectures in dilute solution
We present results of Monte Carlo study of the monomer-monomer correlation
functions, static structure factor and asphericity characteristics of a single
homopolymer in the coil and globular states for three distinct architectures of
the chain: ring, open and star. To rationalise the results we introduce the
dimensionless correlation functions rescaled via the corresponding mean-squared
distances between monomers. For flexible chains with some architectures these
functions exhibit a large degree of universality by falling onto a single or
several distinct master curves. In the repulsive regime, where a stretched
exponential times a power law form (de Cloizeaux scaling) can be applied, the
corresponding exponents and have been obtained. The exponent
is found to be universal for flexible strongly repulsive coils
and in agreement with the theoretical prediction from improved higher-order
Borel-resummed renormalisation group calculations. The short-distance exponents
of an open flexible chain are in a good agreement with the
theoretical predictions in the strongly repulsive regime also. However,
increasing the Kuhn length in relation to the monomer size leads to their fast
cross-over towards the Gaussian behaviour. Likewise, a strong sensitivity of
various exponents on the stiffness of the chain, or on the number
of arms in star polymers, is observed. The correlation functions in the
globular state are found to have a more complicated oscillating behaviour and
their degree of universality has been reviewed. Average shapes of the polymers
in terms of the asphericity characteristics, as well as the universal behaviour
in the static structure factors, have been also investigated.Comment: RevTeX 12 pages, 10 PS figures. Accepted by J. Chem. Phy
Immunization of Mice with a Recombinant Adenovirus Vaccine Inhibits the Early Growth of Mycobacterium tuberculosis After Infection
Background: In pulmonary Mycobacterium tuberculosis (Mtb) infection, immune responses are delayed compared to other respiratory infections, so that antigen-specific cells are not detected in the lungs earlier than day 14. Even after parenteral immunization with Bacille Calmette Guerin (BCG) or a subunit vaccine, the immune response after Mtb challenge is only slightly accelerated and the kinetics of pulmonary Mtb growth do not differ between naïve and immunized animals up to day 14. Methods and Findings: Mice were immunized intranasally with a recombinant adenovirus expressing mycobacterial antigen 85A (Ad85A), challenged by aerosol with Mtb and the kinetics of Mtb growth in the lungs measured. Intranasal immunization with Ad85A inhibits Mtb growth in the early phase of infection, up to day 8. Protection is sustained for at least 7 months and correlates with the presence of antigen-specific activated effector CD8 T cells in the lungs. Antigen 85Aspecific T cells respond to antigen presenting cells from the lungs of mice immunized with Ad85A 23 weeks previously, demonstrating the persistence of antigen in the lungs. Conclusions/Significance: Intranasal immunization with Ad85A can inhibit early growth of Mtb because it establishes a lung antigen depot and maintains an activated lung-resident lymphocyte population. We propose that an optimal immunization strategy for tuberculosis should aim to induce both lung and systemic immunity, targeting the early and late phases of Mt
Data Preparation for the MOLAND Model Application for the Greater Dublin Region
This paper presents the data preparation and processing steps that were taken to provide inputs for the
MOLAND model application for the Greater Dublin Region. The model requires spatial and socioeconomic
data by county for the beginning and end years of the calibration period i.e. 1990, 2000 and
2006. In addition, projections of socio-economic variables are required for implementing different
scenarios. Basic data requirements of the new transport model and description of related data
collection works are also presented. Heretofore detailed information and justification for approaches
taken in preparing data for ingestion to MOLAND has been undocumented. This paper aims to
address that gap. Therefore the steps that have been taken to prepare and process these datasets are
described in detail including background information, interpretation and processing methods used and
the main assumptions and generalisations adopted
Consistency and interpretation of changes in millimeter-scale cortical intrinsic curvature across three independent datasets in schizophrenia.
Several studies have sought to test the neurodevelopmental hypothesis of schizophrenia through analysis of cortical gyrification. However, to date, results have been inconsistent. A possible reason for this is that gyrification measures at the centimeter scale may be insensitive to subtle morphological changes at smaller scales. The lack of consistency in such studies may impede further interpretation of cortical morphology as an aid to understanding the etiology of schizophrenia. In this study we developed a new approach, examining whether millimeter-scale measures of cortical curvature are sensitive to changes in fundamental geometric properties of the cortical surface in schizophrenia. We determined and compared millimeter-scale and centimeter-scale curvature in three separate case-control studies; specifically two adult groups and one adolescent group. The datasets were of different sizes, with different ages and gender-spreads. The results clearly show that millimeter-scale intrinsic curvature measures were more robust and consistent in identifying reduced gyrification in patients across all three datasets. To further interpret this finding we quantified the ratio of expansion in the upper and lower cortical layers. The results suggest that reduced gyrification in schizophrenia is driven by a reduction in the expansion of upper cortical layers. This may plausibly be related to a reduction in short-range connectivity
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