Renormalisation group determination of the order of the DNA denaturation transition

We report on the nature of the thermal denaturation transition of homogeneous DNA as determined from a renormalisation group analysis of the Peyrard-Bishop-Dauxois model. Our approach is based on an analogy with the phenomenon of critical wetting that goes further than previous qualitative comparisons, and shows that the transition is continuous for the average base-pair separation. However, since the range of universal critical behaviour appears to be very narrow, numerically observed denaturation transitions may look first-order, as it has been reported in the literature.Comment: 6 pages; no figures; to appear in Europhysics Letter

Recurrent microblazar activity in Cygnus X-1?

Recurrent flaring events at X- and soft gamma-ray energies have been recently reported for the galactic black hole candidate Cygnus X-1. The observed fluxes during these transient outbursts are far higher than what is observed in ``normal'' episodes. Here we suggest that the origin of this radiation is non-thermal and produced by inverse Compton interactions between relativistic electrons in the jet and external photon fields, with a dominant contribution from the companion star field. The recurrent and relatively rapid variability could be explained by the precession of the jet, which results in a variable Doppler amplification.Comment: 4 pages, 5 figures, Accepted for publication in Astronomy & Astrophysics Letter

On the time variability of gamma-ray sources: A numerical analysis of variability indices

We present a Monte Carlo analysis of the recently introduced variability indices $\tau$ (Tompkins 1999) and $I$ (Zhang et al. 2000 & Torres et al. 2001) for $\gamma$-ray sources. We explore different variability criteria and prove that these two indices, despite the very different approaches used to compute them, are statistically correlated (5 to 7$\sigma$). This conclusion is maintained also for the subset of AGNs and high latitude ($|b|>10$ deg) sources, whereas the correlation is lowered for the low latitude ones, where the influence of the diffuse galactic emission background is strong.Comment: Small changes to match published version in Astronomische Nachrichten (2001). Paper accepted in July 200

Modeling the thermal evolution of enzyme-created bubbles in DNA

The formation of bubbles in nucleic acids (NAs) are fundamental in many biological processes such as DNA replication, recombination, telomeres formation, nucleotide excision repair, as well as RNA transcription and splicing. These precesses are carried out by assembled complexes with enzymes that separate selected regions of NAs. Within the frame of a nonlinear dynamics approach we model the structure of the DNA duplex by a nonlinear network of coupled oscillators. We show that in fact from certain local structural distortions there originate oscillating localized patterns, that is radial and torsional breathers, which are associated with localized H-bond deformations, being reminiscent of the replication bubble. We further study the temperature dependence of these oscillating bubbles. To this aim the underlying nonlinear oscillator network of the DNA duplex is brought in contact with a heat bath using the Nos$\rm{\acute{e}}$-Hoover-method. Special attention is paid to the stability of the oscillating bubbles under the imposed thermal perturbations. It is demonstrated that the radial and torsional breathers, sustain the impact of thermal perturbations even at temperatures as high as room temperature. Generally, for nonzero temperature the H-bond breathers move coherently along the double chain whereas at T=0 standing radial and torsional breathers result.Comment: 19 pages, 7 figure

Variable gamma-ray emission from the Be/X-ray transient A0535+26?

We present a study of the unidentified gamma-ray source 3EG J0542+2610. This source is spatially superposed to the supernova remnant G180.0-1.7, but its time variability makes unlikely a physical link. We have searched into the EGRET location error box for compact radio sources that could be the low energy counterpart of the gamma-ray source. Although 29 point-like radio sources were detected and measured, none of them is strong enough as to be considered the counterpart of a background gamma-ray emitting AGN. We suggest that the only object within the 95 % error box capable of producing the required gamma-ray flux is the X-ray transient A0535+26. We show that this Be/accreting pulsar can produce variable hadronic gamma-ray emission through the mechanism originally proposed by Cheng & Ruderman (1989), where a proton beam accelerated in a magnetospheric electrostatic gap impacts the transient accretion disk.Comment: 6 pages, 3 figures, Astronomy & Astrophysics in pres

Nonthermal processes and neutrino emission from the black hole GRO J0422+32 in a bursting state

GRO J0422+32 is a member of the class of low-mass X-ray binaries (LMXBs). It was discovered during an outburst in 1992. During the entire episode a persistent power-law spectral component extending up to $\sim 1$ MeV was observed, which suggests that nonthermal processes should have occurred in the system. We study relativistic particle interactions and the neutrino production in the corona of GRO J0422+32, and explain the behavior of GRO J0422+32 during its recorded flaring phase. We have developed a magnetized corona model to fit the spectrum of GRO J0422+32 during the low-hard state. We also estimate neutrino emission and study the detectability of neutrinos with 1 km$^3$ detectors, such as IceCube. The short duration of the flares ($\sim$ hours) and an energy cutoff around a few TeV in the neutrino spectrum make neutrino detection difficult. There are, however, many factors that can enhance neutrino emission. The northern-sky coverage and full duty cycle of IceCube make it possible to detect neutrino bursts from objects of this kind through time-dependent analysis.Comment: 12 pages, 11 figures, accepted for publication in A&