Data assimilation for Mars: an overview of results from the Mars Global Surveyor period, proposals for future plans and requirements for open access to assimilation output

Abstract not available. From the introduction: 'The Thermal Emission Spectrometer (TES) aboard Mars Global Surveyor (MGS) has produced an extensive atmospheric data set, both during the initial aerobraking hiatus and later from the scientific mapping phase of the mission which lasted almost three complete Martian seasonal cycles. Thermal profiles for the atmosphere below about 40 km, and total dust and water ice opacities, have been retrieved from TES spectra (Conrath et al., 2000, Smith et al., 2000)...'

Climatology on Mars: interannual variability of mean fields

Not availabl

Data assimilation of three mars years of thermal emission spectrometer observations: Large-scale transient and stationary waves

Introduction: Large-scale traveling and stationary planetary waves are diagnosed from an analysis of profiles retrieved from the Thermal Emission Spectrometer (TES) [1] aboard the Mars Global Surveyor (MGS) spacecraft during its scientific mapping phase. The analysis was conducted by assimilating the TES temperature profile and total dust opacity retrievals [2] into a pseudo-spectral Mars general circulation model to produce a full, physically self consistent record of all atmospheric variables stored at an interval of two hours over the entire MGS mapping phase. The data cover a period of about three Mars years, corresponding to the interval 1999–2004 on Earth. These include the year which contained the 2001 global dust storm [3] and two years of more moderate dust activity, although large regional storms occurred during southern hemisphere summer in both years and there was considerable atmospheric variability between all three years [4]. We focus on the planetary wave activity, both traveling and stationary large-scale waves, in the assimilated record. Data assimilation is a particularly useful technique for the analysis of transient wave behaviour since it is capable of producing global, time-dependent atmospheric fields, which the assimilation scheme endeavours to make as consistent as possible with whatever observations are available. These atmospheric variables may be sampled from the model as often as desired, on a regular grid of points. If particular variables, or regions of the atmosphere, are not observed directly, the model will at least ensure that they are consistent with the laws of physics incorporated within its framework. A complex climatology of transient waves is revealed, modulated by the large-scale topography and surface thermal properties, the time of year and, crucially, the amount of dust suspended in the atmosphere. Some individual case studies show the temporal and spatial structures of the waves in the assimilation record, although the large data set has by no means been fully explored. Companion papers discuss the thermal atmospheric tides [5] and the processes associated with the initiation of dust storms [6] from the same assimilated analysis. Output from the same assimilation has also been used to identify potential deficiencies in the model, such as the lack of water ice clouds [7]

Brazilian Buffalo Genetic Variability by Cross-Specific Microsatellite Set

Buffaloes (Bubalus bubalis) are widely distributed and were introduced to Brazil in 1895. Most of the molecular genetic characterization of buffaloes has been done with cross-specific (cattle) markers, but few of them include Brazilian populations. Nineteen commonly used cattle microsatellites were tested to develop a multiplexed set of microsatellites and characterize Brazilian buffalo. Three PCR mixes were finally developed with the 11 markers that succeed in amplify and were polymorphic (58%). The average number of alleles was 5.42, with an average observed and expected heterocigozity of 0.441 and 0.695, respectively. As it was expected, Brazilian buffalo variability was lower than the previously reported from the domestication centres (China and India), but higher than the seriously selected European populations. The exclusion power calculated for the eleven markers in Brazilian buffalo was 0.9999999996, this allows its use in DNA based traceability.Instituto de Genética Veterinari

Evaluation of six single nucleotide polymorphisms for bovine traceability in the context of the argentine-chinese beef trade

Genetic traceability refers to methods associated with the identification of animals and their products through DNA characterization of individuals, breeds or species. To trace breeds, it is necessary to define the breed groups to analyze, and the most appropriate molecular marker set. The selection of genetic markers depends on the gene frequency distribution, the genetic distance among breeds and the presence of private alleles. In this study, we assessed six single nucleotide polymorphisms (SNPs) located in the DGAT1, TG, LEP, GH, FABP4 and GnRHR genes, as potential genetic markers to be included into a panel for genetic traceability for the identification of breed origin associated with the bovine beef trade. The results of the genetic characterization of four of the main Chinese cattle populations and of the principal breeds raised in Argentina and in the world (five Bos taurus and two B. indicus) suggest that these SNP markers can be successfully used as a part of an effective traceability system for the identification of cattle breed origin in the context of the Chinese meat imports, and in particular in the Argentine-Chinese beef trade.La trazabilidad genética, la cual se basa en la identificación de animales y sus productos, permite la identificación individual, racial o de especie. Esta metodología es útil para detectar fraudes y valorizar producciones locales. Para llevar a cabo la trazabilidad es necesario definir los grupos raciales a analizar y el panel de marcadores más apropiados a utilizar. La selección de marcadores depende de la distribución de las frecuencias génicas, de la distancia genética entre las razas y de la presencia de alelos privativos. El objetivo de este trabajo consistió en evaluar seis polimorfismos de nucleótido simple (SNPs) ubicados en los genes DGAT1, TG, LEP, GH, FABP4 y GnRHR como posibles marcadores genéticos apropiados para ser incluidos en un panel de trazabilidad para la identificación de la raza de origen en el contexto de la comercialización de carne bovina. Los resultados de la caracterización genética de cuatro de las principales poblaciones bovinas chinas y de las razas más importantes de nuestro país (cinco Bos taurus y dos B. indicus) sugieren que los marcadores estudiados pueden ser utilizados exitosamente como parte de un sistema de trazabilidad efectivo para identificar el origen de la carne bovina en el contexto de la importación de carne en el mercado chino y en particular en el comercio entre Argentina y China.Fil: Ripoli, María Verónica. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico La Plata. Instituto de Genética Veterinaria "Ingeniero Fernando Noel Dulout"; Argentina. Universidad Nacional de La Plata. Facultad de Ciencias Veterinarias; ArgentinaFil: Wei, S.. Chinese Academy of Agricultural Sciences; ChinaFil: Rogberg Muñoz, Andres. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico La Plata. Instituto de Genética Veterinaria "Ingeniero Fernando Noel Dulout"; Argentina. Universidad Nacional de La Plata. Facultad de Ciencias Veterinarias; ArgentinaFil: Guo, B. L.. Chinese Academy of Agricultural Sciences; ChinaFil: Goszczynski, Daniel Estanislao. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico La Plata. Instituto de Genética Veterinaria "Ingeniero Fernando Noel Dulout"; Argentina. Universidad Nacional de La Plata. Facultad de Ciencias Veterinarias; ArgentinaFil: Fernandez, María Elena. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico La Plata. Instituto de Genética Veterinaria "Ingeniero Fernando Noel Dulout"; Argentina. Universidad Nacional de La Plata. Facultad de Ciencias Veterinarias; ArgentinaFil: Melucci, L.. Instituto Nacional de Tecnología Agropecuaria. Centro Regional Buenos Aires. Estación Experimental Agropecuaria Balcarce; Argentina. Universidad Nacional de Mar del Plata. Facultad de Ciencias Agrarias; ArgentinaFil: Liron, Juan Pedro. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico La Plata. Instituto de Genética Veterinaria "Ingeniero Fernando Noel Dulout"; Argentina. Universidad Nacional de La Plata. Facultad de Ciencias Veterinarias; ArgentinaFil: Villarreal, E.. Instituto Nacional de Tecnología Agropecuaria. Centro Regional Buenos Aires. Estación Experimental Agropecuaria Balcarce; Argentina. Universidad Nacional de Mar del Plata. Facultad de Ciencias Agrarias; ArgentinaFil: Wei, Y. M.. Chinese Academy of Agricultural Sciences; ChinaFil: Giovambattista, Guillermo. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico La Plata. Instituto de Genética Veterinaria "Ingeniero Fernando Noel Dulout"; Argentina. Universidad Nacional de La Plata. Facultad de Ciencias Veterinarias; Argentin

Genetic variation in FABP4 and evaluation of its effects on beef cattle fat content

FABP4 is a protein primarily expressed in adipocytes and macrophages that plays a key role in fatty acid trafficking and lipid hydrolysis. FABP4 gene polymorphisms have been associated with meat quality traits in cattle, mostly in Asian breeds under feedlot conditions. The objectives of this work were to characterize FABP4 genetic variation in several worldwide cattle breeds and evaluate possible genotype effects on fat content in a pasture-fed crossbred (Angus-Hereford-Limousin) population. We re-sequenced 43 unrelated animals from nine cattle breeds (Angus, Brahman, Creole, Hereford, Holstein, Limousin, Nelore, Shorthorn, and Wagyu) and obtained 22 single nucleotide polymorphisms (SNPs) over 3,164 bp, including four novel polymorphisms. Haplotypes and linkage disequilibrium analyses showed a high variability. Five SNPs were selected to perform validation and association studies in our crossbred population. Four SNPs showed well-balanced allele frequencies (minor frequency > 0.159), and three showed no significant deviations from Hardy-Weinberg proportions. SNPs showed significant effects on backfat thickness and fatty acid composition (P < 0.05). The protein structure of one of the missense SNPs was analyzed to elucidate its possible effect on fat content in our studied population. Our results revealed a possible blockage of the fatty acid binding site by the missense mutation.Instituto de Genética Veterinari

Evaluation of six single nucleotide polymorphisms for bovine traceability in the context of the argentine-chinese beef trade

Genetic traceability refers to methods associated with the identification of animals and their products through DNA characterization of individuals, breeds or species. To trace breeds, it is necessary to define the breed groups to analyze, and the most appropriate molecular marker set. The selection of genetic markers depends on the gene frequency distribution, the genetic distance among breeds and the presence of private alleles. In this study, we assessed six single nucleotide polymorphisms (SNPs) located in the DGAT1, TG, LEP, GH, FABP4 and GnRHR genes, as potential genetic markers to be included into a panel for genetic traceability for the identification of breed origin associated with the bovine beef trade. The results of the genetic characterization of four of the main Chinese cattle populations and of the principal breeds raised in Argentina and in the world (five Bos taurus and two B. indicus) suggest that these SNP markers can be successfully used as a part of an effective traceability system for the identification of cattle breed origin in the context of the Chinese meat imports, and in particular in the Argentine-Chinese beef trade.La trazabilidad genética, la cual se basa en la identificación de animales y sus productos, permite la identificación individual, racial o de especie. Esta metodología es útil para detectar fraudes y valorizar producciones locales. Para llevar a cabo la trazabilidad es necesario definir los grupos raciales a analizar y el panel de marcadores más apropiados a utilizar. La selección de marcadores depende de la distribución de las frecuencias génicas, de la distancia genética entre las razas y de la presencia de alelos privativos. El objetivo de este trabajo consistió en evaluar seis polimorfismos de nucleótido simple (SNPs) ubicados en los genes DGAT1, TG, LEP, GH, FABP4 y GnRHR como posibles marcadores genéticos apropiados para ser incluidos en un panel de trazabilidad para la identificación de la raza de origen en el contexto de la comercialización de carne bovina. Los resultados de la caracterización genética de cuatro de las principales poblaciones bovinas chinas y de las razas más importantes de nuestro país (cinco Bos taurus y dos B. indicus) sugieren que los marcadores estudiados pueden ser utilizados exitosamente como parte de un sistema de trazabilidad efectivo para identificar el origen de la carne bovina en el contexto de la importación de carne en el mercado chino y en particular en el comercio entre Argentina y China.Instituto de Genética Veterinari

Refining genomewide association for growth and fat deposition traits in an F₂ pig population

The identification of genomic regions that affect additive genetic variation and contain genes involved in controlling growth and fat deposition has enormous impact in the farm animal industry (e.g., carcass merit and meat quality). Therefore, a genomewide association study was implemented in an F₂ pig population using a 60,000 SNP marker panel for traits related to growth and fat deposition. Estimated genomic EBV were linearly transformed to calculate SNP effects and to identify genomic positions possibly associated with the genetic variability of each trait. Genomic segments were then defined considering the markers included in a region 1 Mb up- and downstream from the SNP with the smallest -value and a false discovery rate < 0.05 for each trait. The significance for each 2-Mb segment was tested using the Bonferroni correction. Significant SNP were detected on SSC2, SSC3, SSC5, and SSC6, but 2-Mb segment significant effects were observed on SSC3 for weight at birth (wt_birth) and on SSC6 for 10th-rib backfat and last-rib backfat measured by ultrasound at different ages. Furthermore, a 6-Mb segment on SSC6 was also considered because the 2-Mb segments for 10 different fat deposition traits were overlapped. Although the segment effects for each trait remain significant, the proportion of additive variance explained by this larger segment was slightly smaller in some traits. In general, the results confirm the presence of genetic variability for wt_birth on SSC3 (18.0-20.2 Mb) and for fat deposition traits on SSC6 (133.8-136.0 Mb). Within these regions, fibrosin (FBRS) and myosin light chain, phosphorylatable, fast skeletal muscle (MYLPF) genes could be considered as candidates for the wt_birth signal on SSC3, and the SERPINE1 mRNAbinding protein 1 gene (SERBP1) may be a candidate for the fat deposition trait signals on SSC6.Facultad de Ciencias VeterinariasInstituto de Genética Veterinari