TULP3 : a potential biomarker in colorectal cancer?

Colorectal cancer (CRC) is the second most common cancer in women and the third most common cancer in men globally. The identification of differentially expressed genes associated to patient’s clinical data may represent a useful approach to find important genes in CRC carcinogenesis. Previously, the TULP3 transcription factor was identified as a possible prognostic biomarker in pancreatic ductal adenocarcinoma. Considering that pancreatic and colorectal tissues have the same embryonic origin, we investigated the profile of TULP3 expression in CRC hypothesizing that it may have a role in its development. We comparatively analysed TULP3 gene expression in CRC and normal adjacent colonic tissue and assessed association of expression profiles with survival and clinicopathological information, using publicly available datasets. TULP3 expression levels were increased in CRC when compared to the adjacent non-tumoral tissue. In addition, higher TULP3 gene expression was associated to lymphatic and vascular invasion in colon adenocarcinoma (COAD) and rectum adenocarcinoma (READ), respectively. In summary, our results point to a possible role of TULP3 as a diagnostic and prognostic biomarker in CRC. Additional studies are necessary to confirm these preliminary findings

Acoustic Identification of Ae. aegypti Mosquitoes using Smartphone Apps and Residual Convolutional Neural Networks

In this paper, we advocate in favor of smartphone apps as low-cost, easy-to-deploy solution for raising awareness among the population on the proliferation of Aedes aegypti mosquitoes. Nevertheless, devising such a smartphone app is challenging, for many reasons, including the required maturity level of techniques for identifying mosquitoes based on features that can be captured using smartphone resources. In this paper, we identify a set of (non-exhaustive) requirements that smartphone apps must meet to become an effective tooling in the fight against Ae. aegypti, and advance the state-of-the-art with (i) a residual convolutional neural network for classifying Ae. aegypti mosquitoes from their wingbeat sound, (ii) a methodology for reducing the influence of background noise in the classification process, and (iii) a dataset for benchmarking solutions for detecting Ae. aegypti mosquitoes from wingbeat sound recordings. From the analysis of accuracy and recall, we provide evidence that convolutional neural networks have potential as a cornerstone for tracking mosquito apps for smartphones

Urinary peptidomics and bioinformatics for the detection of diabetic kidney disease

The aim of this study was to establish a peptidomic profle based on LC-MS/MS and random forest (RF) algorithm to distinguish the urinary peptidomic scenario of type 2 diabetes mellitus (T2DM) patients with diferent stages of diabetic kidney disease (DKD). Urine from 60 T2DM patients was collected: 22 normal (stage A1), 18 moderately increased (stage A2) and 20 severely increased (stage A3) albuminuria. A total of 1080 naturally occurring peptides were detected, which resulted in the identifcation of a total of 100 proteins, irrespective of the patients’ renal status. The classifcation accuracy showed that the most severe DKD (A3) presented a distinct urinary peptidomic pattern. Estimates for peptide importance assessed during RF model training included multiple fragments of collagen and alpha-1 antitrypsin, previously associated to DKD. Proteasix tool predicted 48 proteases potentially involved in the generation of the 60 most important peptides identifed in the urine of DM patients, including metallopeptidases, cathepsins, and calpains. Collectively, our study lightened some biomarkers possibly involved in the pathogenic mechanisms of DKD, suggesting that peptidomics is a valuable tool for identifying the molecular mechanisms underpinning the disease and thus novel therapeutic targets