Granular Impact Dynamics: Acoustics and Fluctuations

In the corresponding fluid dynamics video, created for the APS DFD 2012 Gallery of Fluid Motion, we show high-speed videos of 2D granular impact experiments, where an intruder strikes a collection of bidisperse photoelastic disks from above. We discuss the force beneath the intruder, which is strongly fluctuating in space and time. These fluctuations correspond to acoustic pulses which propagate into the medium. Analysis shows that this process, in our experiments, is dominated by collisions with grain clusters. The energy from these collisions is carried into the granular medium along networks of grains, where is it dissipated

Steady flow dynamics during granular impact.

We study experimentally and computationally the dynamics of granular flow during impacts where intruders strike a collection of disks from above. In the regime where granular force dynamics are much more rapid than the intruder motion, we find that the particle flow near the intruder is proportional to the instantaneous intruder speed; it is essentially constant when normalized by that speed. The granular flow is nearly divergence free and remains in balance with the intruder, despite the latter's rapid deceleration. Simulations indicate that this observation is insensitive to grain properties, which can be explained by the separation of time scales between intergrain force dynamics and intruder dynamics. Assuming there is a comparable separation of time scales, we expect that our results are applicable to a broad class of dynamic or transient granular flows. Our results suggest that descriptions of static-in-time granular flows might be extended or modified to describe these dynamic flows. Additionally, we find that accurate grain-grain interactions are not necessary to correctly capture the granular flow in this regime

Electroconvulsive therapy mediates neuroplasticity of white matter microstructure in major depression.

Whether plasticity of white matter (WM) microstructure relates to therapeutic response in major depressive disorder (MDD) remains uncertain. We examined diffusion tensor imaging (DTI) correlates of WM structural connectivity in patients receiving electroconvulsive therapy (ECT), a rapidly acting treatment for severe MDD. Tract-Based Spatial Statistics (TBSS) applied to DTI data (61 directions, 2.5 mm(3) voxel size) targeted voxel-level changes in fractional anisotropy (FA), and radial (RD), axial (AD) and mean diffusivity (MD) in major WM pathways in MDD patients (n=20, mean age: 41.15 years, 10.32 s.d.) scanned before ECT, after their second ECT and at transition to maintenance therapy. Comparisons made at baseline with demographically similar controls (n=28, mean age: 39.42 years, 12.20 s.d.) established effects of diagnosis. Controls were imaged twice to estimate scanning-related variance. Patients showed significant increases of FA in dorsal fronto-limbic circuits encompassing the anterior cingulum, forceps minor and left superior longitudinal fasciculus between baseline and transition to maintenance therapy (P<0.05, corrected). Decreases in RD and MD were observed in overlapping regions and the anterior thalamic radiation (P<0.05, corrected). Changes in DTI metrics associated with therapeutic response in tracts showing significant ECT effects differed between patients and controls. All measures remained stable across time in controls. Altered WM microstructure in pathways connecting frontal and limbic areas occur in MDD, are modulated by ECT and relate to therapeutic response. Increased FA together with decreased MD and RD, which trend towards normative values with treatment, suggest increased fiber integrity in dorsal fronto-limbic pathways involved in mood regulation

Sustainable regeneration : everyday landscapes of food acquisition, Pendleton

The report is structured as follows. Chapter two provides the context to the research, outlining why a study of food acquisition and digital inclusion is necessary in Pendleton at this time, and why both issues are linked to the current regeneration programme. Chapter three sets out the methodology employed along with details of the recruitment of participants. Chapter four provides a detailed analysis of the findings from the digital skills side of the research including: digital usage, confidence and competence, and digital skills and shopping, and chapter five focuses on findings related to the food landscape. Chapter six summarises the key findings by identifying what is going well, making recommendations for changes at a variety of scale, as well as specific recommendations for the on-going regeneration programme, and recommendations for further research

Identification of animal movement patterns using tri-axial magnetometry

BackgroundAccelerometers are powerful sensors in many bio-logging devices, and are increasingly allowing researchers to investigate the performance, behaviour, energy expenditure and even state, of free-living animals. Another sensor commonly used in animal-attached loggers is the magnetometer, which has been primarily used in dead-reckoning or inertial measurement tags, but little outside that. We examine the potential of magnetometers for helping elucidate the behaviour of animals in a manner analogous to, but very different from, accelerometers. The particular responses of magnetometers to movement means that there are instances when they can resolve behaviours that are not easily perceived using accelerometers.MethodsWe calibrated the tri-axial magnetometer to rotations in each axis of movement and constructed 3-dimensional plots to inspect these stylised movements. Using the tri-axial data of Daily Diary tags, attached to individuals of number of animal species as they perform different behaviours, we used these 3-d plots to develop a framework with which tri-axial magnetometry data can be examined and introduce metrics that should help quantify movement and behaviour.ResultsTri-axial magnetometry data reveal patterns in movement at various scales of rotation that are not always evident in acceleration data. Some of these patterns may be obscure until visualised in 3D space as tri-axial spherical plots (m-spheres). A tag-fitted animal that rotates in heading while adopting a constant body attitude produces a ring of data around the pole of the m-sphere that we define as its Normal Operational Plane (NOP). Data that do not lie on this ring are created by postural rotations of the animal as it pitches and/or rolls. Consequently, stereotyped behaviours appear as specific trajectories on the sphere (m-prints), reflecting conserved sequences of postural changes (and/or angular velocities), which result from the precise relationship between body attitude and heading. This novel approach shows promise for helping researchers to identify and quantify behaviours in terms of animal body posture, including heading.ConclusionMagnetometer-based techniques and metrics can enhance our capacity to identify and examine animal behaviour, either as a technique used alone, or one that is complementary to tri-axial accelerometry

An evaluation of the use of coils of different orientations for the eddy current inspection of austenitic stainless steel vessels

With the advent of the next generation of nuclear reactors, the liquid metal cooled fast breeder reactors (LMFBR), new problems are being considered in many fields including that of non—destructive testing (NDT). Within NDT the more extensive use of eddy current techniques as an alternative to ultrasonics is one such area of investigation, particularly with regard to the inspection of the austenitic stainless steel primary vessel of the fast reactor. The inspection of the outer surface of the pressure vessel for surface breaking defects has been considered. The feasibility of defect detection in stainless steel welds using eddy currents has been demonstrated using standard eddy current equipment. An evaluation of the use of coils in a horizontal orientation has been undertaken, both from theoretical and experimental viewpoints. The comparison of these results with those obtained for a more conventional vertical axis coil has indicated that the horizontal axis coil has potential advantages for this particular inspection case. A coil optimisation study has demonstrated that the potential advantages of horizontal axis coils can be more fully realised through a careful choice of probe coil. The investigation has highlighted the increased understanding that can be obtained about eddy current testing by way of complimentary experimental and theoretical studies which consider an engineering problem of current interest

Quantum oscillations in quasi-one-dimensional metals with spin-density-wave ground states

We consider the magnetoresistance oscillation phenomena in the Bechgaard salts (TMTSF)(2)X, where X = ClO4, PF6, and AsF6 in pulsed magnetic fields to 51 T. Of particular importance is the observation of a new magnetoresistance oscillation for X = ClO4 in its quenched state. In the absence of any Fermi-surface reconstruction due to anion order at low temperatures, all three materials exhibit nonmonotonic temperature dependence of the oscillation amplitude in the spin-density-wave (SDW) state. We discuss a model where, below a characteristic temperature T* within the SDW state, a magnetic breakdown gap opens. [S0163-1829(99)00904-2]

Correlates of Complete Childhood Vaccination in East African Countries.

Despite the benefits of childhood vaccinations, vaccination rates in low-income countries (LICs) vary widely. Increasing coverage of vaccines to 90% in the poorest countries over the next 10 years has been estimated to prevent 426 million cases of illness and avert nearly 6.4 million childhood deaths worldwide. Consequently, we sought to provide a comprehensive examination of contemporary vaccination patterns in East Africa and to identify common and country-specific barriers to complete childhood vaccination. Using data from the Demographic and Health Surveys (DHS) for Burundi, Ethiopia, Kenya, Rwanda, Tanzania, and Uganda, we looked at the prevalence of complete vaccination for polio, measles, Bacillus Calmette-Guérin (BCG) and DTwPHibHep (DTP) as recommended by the WHO among children ages 12 to 23 months. We conducted multivariable logistic regression within each country to estimate associations between complete vaccination status and health care access and sociodemographic variables using backwards stepwise regression. Vaccination varied significantly by country. In all countries, the majority of children received at least one dose of a WHO recommended vaccine; however, in Ethiopia, Tanzania, and Uganda less than 50% of children received a complete schedule of recommended vaccines. Being delivered in a public or private institution compared with being delivered at home was associated with increased odds of complete vaccination status. Sociodemographic covariates were not consistently associated with complete vaccination status across countries. Although no consistent set of predictors accounted for complete vaccination status, we observed differences based on region and the location of delivery. These differences point to the need to examine the historical, political, and economic context of each country in order to maximize vaccination coverage. Vaccination against these childhood diseases is a critical step towards reaching the Millennium Development Goal of reducing under-five mortality by two-thirds by 2015 and thus should be a global priority

Life history, patchy distribution, and patchy taxonomy in a shallow-water invertebrate (Mollusca Polyplacophora: Lepidopleurida)

Things without names are difficult to rationalise, and so species that go without names are difficult to conserve or protect. This is a case study in resolving conflicts in historical taxonomy and ‘real’ species (identifiable and evolutionarily relevant groupings) using an approach including population genetics, natural history, and pragmatism. We report the observation that populations of a shallow-water chiton species from Washington and British Columbia demonstrate extremely high site fidelity and patchy distribution. Their limited dispersal potential and isolation could be explained by a brooding life history. This stands in direct contrast with the supposedly wide distribution of this “species”, Leptochiton rugatus (Carpenter in Pilsbry, 1892) sensu lato, from the Sea of Japan to Baja California. But this lineage has previously been suggested to comprise several cryptic species. Indeed, a haplotype network analysis using 61 individual sequences of the cytochrome oxidase c subunit I gene for L. rugatus s.l. revealed four discrete clusters which correspond to different parts of the geographic range. We infer these to represent four distinct species, at least two of which are likely novel. Leptochiton rugatus sensu stricto is herein reinterpreted as restricted to California and Baja California, and the new name L. cascadiensis sp. nov. is established for the lineage with a distribution in the Cascadia coastal bioregion from the panhandle of Alaska to Oregon. There are minor morphological differences among these species in the L. rugatus species complex, but genetic data or morphological observations alone would not have been sufficient to definitively recognise these groups as species-level lineages. The observation that different species within the complex may have different life history strategies provides important support for interpreting different populations as genuinely separate species.</p

A probabilistic interpretation of PID controllers using active inference

In the past few decades, probabilistic interpretations of brain functions have become widespread in cognitive science and neuroscience. The Bayesian brain hypothesis, predictive coding, the free energy principle and active inference are increasingly popular theories of cognitive functions that claim to unify understandings of life and cognition within general mathematical frameworks derived from information and control theory, statistical physics and machine learning. The connections between information and control theory have been discussed since the 1950’s by scientists like Shannon and Kalman and have recently risen to prominence in modern stochastic optimal control theory. However, the implications of the confluence of these two theoretical frameworks for the biological sciences have been slow to emerge. Here we argue that if the active inference proposal is to be taken as a general process theory for biological systems, we need to consider how existing control theoretical approaches to biological systems relate to it. In this work we will focus on PID (Proportional-Integral-Derivative) controllers, one of the most common types of regulators employed in engineering and more recently used to explain behaviour in biological systems, e.g. chemotaxis in bacteria and amoebae or robust adaptation in biochemical networks. Using active inference, we derive a probabilistic interpretation of PID controllers, showing how they can fit a more general theory of life and cognition under the principle of (variational) free energy minimisation under simple linear generative models.most common types of regulators employed in engineering and more recently used to explain behaviour in biological systems, e.g. chemotaxis in bacteria and amoebae or robust adaptation in biochemical networks. Using active inference, we derive a probabilistic interpretation of PID controllers, showing how they can fit a more general theory of life and cognition under the principle of (variational) free energy minimisation under simple linear generative models