Genome Sequence of a Mesophilic Hydrogenotrophic Methanogen Methanocella paludicola, the First Cultivated Representative of the Order Methanocellales

We report complete genome sequence of a mesophilic hydrogenotrophic methanogen Methanocella paludicola, the first cultured representative of the order Methanocellales once recognized as an uncultured key archaeal group for methane emission in rice fields. The genome sequence of M. paludicola consists of a single circular chromosome of 2,957,635 bp containing 3004 protein-coding sequences (CDS). Genes for most of the functions known in the methanogenic archaea were identified, e.g. a full complement of hydrogenases and methanogenesis enzymes. The mixotrophic growth of M. paludicola was clarified by the genomic characterization and re-examined by the subsequent growth experiments. Comparative genome analysis with the previously reported genome sequence of RC-IMRE50, which was metagenomically reconstructed, demonstrated that about 70% of M. paludicola CDSs were genetically related with RC-IMRE50 CDSs. These CDSs included the genes involved in hydrogenotrophic methane production, incomplete TCA cycle, assimilatory sulfate reduction and so on. However, the genetic components for the carbon and nitrogen fixation and antioxidant system were different between the two Methanocellales genomes. The difference is likely associated with the physiological variability between M. paludicola and RC-IMRE50, further suggesting the genomic and physiological diversity of the Methanocellales methanogens. Comparative genome analysis among the previously determined methanogen genomes points to the genome-wide relatedness of the Methanocellales methanogens to the orders Methanosarcinales and Methanomicrobiales methanogens in terms of the genetic repertoire. Meanwhile, the unique evolutionary history of the Methanocellales methanogens is also traced in an aspect by the comparative genome analysis among the methanogens

Complete Genomic Characterization of a Pathogenic A.II Strain of Francisella tularensis Subspecies tularensis

Francisella tularensis is the causative agent of tularemia, which is a highly lethal disease from nature and potentially from a biological weapon. This species contains four recognized subspecies including the North American endemic F. tularensis subsp. tularensis (type A), whose genetic diversity is correlated with its geographic distribution including a major population subdivision referred to as A.I and A.II. The biological significance of the A.I – A.II genetic differentiation is unknown, though there are suggestive ecological and epidemiological correlations. In order to understand the differentiation at the genomic level, we have determined the complete sequence of an A.II strain (WY96-3418) and compared it to the genome of Schu S4 from the A.I population. We find that this A.II genome is 1,898,476 bp in size with 1,820 genes, 1,303 of which code for proteins. While extensive genomic variation exists between “WY96” and Schu S4, there is only one whole gene difference. This one gene difference is a hypothetical protein of unknown function. In contrast, there are numerous SNPs (3,367), small indels (1,015), IS element differences (7) and large chromosomal rearrangements (31), including both inversions and translocations. The rearrangement borders are frequently associated with IS elements, which would facilitate intragenomic recombination events. The pathogenicity island duplicated regions (DR1 and DR2) are essentially identical in WY96 but vary relative to Schu S4 at 60 nucleotide positions. Other potential virulence-associated genes (231) varied at 559 nucleotide positions, including 357 non-synonymous changes. Molecular clock estimates for the divergence time between A.I and A.II genomes for different chromosomal regions ranged from 866 to 2131 years before present. This paper is the first complete genomic characterization of a member of the A.II clade of Francisella tularensis subsp. tularensis

Isolation and Mutagenesis of a Capsule-Like Complex (CLC) from Francisella tularensis, and Contribution of the CLC to F. tularensis Virulence in Mice

BACKGROUND: Francisella tularensis is a category-A select agent and is responsible for tularemia in humans and animals. The surface components of F. tularensis that contribute to virulence are not well characterized. An electron-dense capsule has been postulated to be present around F. tularensis based primarily on electron microscopy, but this specific antigen has not been isolated or characterized. METHODS AND FINDINGS: A capsule-like complex (CLC) was effectively extracted from the cell surface of an F. tularensis live vaccine strain (LVS) lacking O-antigen with 0.5% phenol after 10 passages in defined medium broth and growth on defined medium agar for 5 days at 32°C in 7% CO₂. The large molecular size CLC was extracted by enzyme digestion, ethanol precipitation, and ultracentrifugation, and consisted of glucose, galactose, mannose, and Proteinase K-resistant protein. Quantitative reverse transcriptase PCR showed that expression of genes in a putative polysaccharide locus in the LVS genome (FTL_1432 through FTL_1421) was upregulated when CLC expression was enhanced. Open reading frames FTL_1423 and FLT_1422, which have homology to genes encoding for glycosyl transferases, were deleted by allelic exchange, and the resulting mutant after passage in broth (LVSΔ1423/1422_P10) lacked most or all of the CLC, as determined by electron microscopy, and CLC isolation and analysis. Complementation of LVSΔ1423/1422 and subsequent passage in broth restored CLC expression. LVSΔ1423/1422_P10 was attenuated in BALB/c mice inoculated intranasally (IN) and intraperitoneally with greater than 80 times and 270 times the LVS LD₅₀, respectively. Following immunization, mice challenged IN with over 700 times the LD₅₀ of LVS remained healthy and asymptomatic. CONCLUSIONS: Our results indicated that the CLC may be a glycoprotein, FTL_1422 and -FTL_1423 were involved in CLC biosynthesis, the CLC contributed to the virulence of F. tularensis LVS, and a CLC-deficient mutant of LVS can protect mice against challenge with the parent strain

Neural Responses to Truth Telling and Risk Propensity under Asymmetric Information

This research was supported by the Laureate Institute for Brain Research and the William K. Warren Foundation. The funders had no role in the study design, data collection and analysis, decision to publish, or preparation of the manuscript.Trust is multi-dimensional because it can be characterized by subjective trust, trust antecedent, and behavioral trust. Previous research has investigated functional brain responses to subjective trust (e.g., a judgment of trustworthiness) or behavioral trust (e.g., decisions to trust) in perfect information, where all relevant information is available to all participants. In contrast, we conducted a novel examination of the patterns of functional brain activity to a trust antecedent, specifically truth telling, in asymmetric information, where one individual has more information than others, with the effect of varying risk propensity. We used functional magnetic resonance imaging (fMRI) and recruited 13 adults, who played the Communication Game, where they served as the “Sender” and chose either truth telling (true advice) or lie telling (false advice) regarding the best payment allocation for their partner. Our behavioral results revealed that subjects with recreational high risk tended to choose true advice. Moreover, fMRI results yielded that the choices of true advice were associated with increased cortical activation in the anterior rostral medial and frontopolar prefrontal cortices, middle frontal cortex, temporoparietal junction, and precuneus. Furthermore, when we specifically evaluated a role of the bilateral amygdala as the region of interest (ROI), decreased amygdala response was associated with high risk propensity, regardless of truth telling or lying. In conclusion, our results have implications for how differential functions of the cortical areas may contribute to the neural processing of truth telling.Yeshttp://www.plosone.org/static/editorial#pee

Adsorption of mixed cationic and nonionic surfactants at the hydrophilic silicon surface from aqueous solution: The effect of solution composition and concentration

The adsorption of the mixed cationic and nonionic surfactants of hexadecyltrimethylammonium bromide (C16TAB) and hexaethylene glycol monododecyl ether (C12EO6) at the hydrophilic silicon-solution interface has been measured by specular neutron reflection. The effect of solution composition and concentration on the adsorbed amount, surface structure, and composition has been investigated at pH 2.4. Specular neutron reflection, in combination with H/D isotopic substitution of both the solvent and surfactant, enables detailed structural and compositional information about the adsorbed layer to be obtained. The results obtained are compared with those reported elsewhere for the adsorption of the same surfactant mixture at the air-water interface and for surfactant mixing in micelles. Consistent with other studies, the structure of the adsorbed layer is described as a `defective' bilayer or `flattened' micelles. The variation in the adsorbed amount with solution composition is a maximum at an equimolar solution composition. For solutions richer in C16TAB, the surface and solution compositions are identical (consistent with ideal mixing). Whereas for solutions richer in C12EO6 there is a departure from ideality, and the surface is richer in the cationic surfactant

Structure of Mixed Anionic/Nonionic Surfactant Micelles: Experimental Observations Relating to the Role of Headgroup Electrostatic and Steric Effects and the Effects of Added Electrolyte

The structures of the mixed anionic/nonionic surfactant micelles of SDS/C12E6 and SDS/C12E8 have been measured by small angle neutron scattering (SANS). The variations in the micelle aggregation number and surface charge with composition, measured in D2O and in dilute electrolyte, 0.01 and 0.05 M NaCl, provide data on the relative roles of the surfactant headgroup steric and electrostatic interactions and their contributions to the free energy of micellization. For the SDS/C12E8 mixture, solutions increasingly rich in C12E8 show a modest micellar growth and an increase in the surface charge. The changes with increasing electrolyte concentration are similarly modest. In contrast, for the SDS/C12E6 mixture, solutions rich in C12E6 show a more significant increase in aggregation number. Furthermore, electrolyte has a more substantial effect on the aggregation for the nonionic (C12E6) rich mixtures. The experimental results are discussed in the context of estimates of the steric and electrostatic contributions to the free energy of micellization, calculated from the molecular thermodynamic approach. The variation in micelle surface charge is discussed in the context of the "dressed micelle" theory for micelle ionization, and other related data

The structure and composition of surfactant-polymer mixtures of sodium dodecyl sulphate, hexaethylene glycol monododecyl ether and poly-(dimethyldialyl ammonium chloride) adsorbed at the air-water interface

Specular neutron reflection has been used to investigate the composition and structure of the surfactant-polymer mixture of sodium dodecyl sulphate (SDS) and hexaethylene glycol monododecyl ether (C12E6), and the cationic polymer poly-(dimethyldialyl ammonium chloride) (dmdaac), at the air-water interface. In particular, the effects of surfactant and polymer concentration are investigated. The addition of the cationic polymer results in an interface more rich in SDS. The variation of surfactant composition with polymer and surfactant concentration shows a complex behaviour, which is related indirectly to the bulk solution phase behaviour. The amount of polymer at the interface increases with increasing polymer concentration, but decreases with increasing surfactant concentration at a fixed solution polymer concentration. At a polymer concentration approximately 100 ppm there is a marked change in the structure of the adsorbed polymer layer: the thickness of the absorbed layer increases from approximately 20 angstroms to approximately 30 angstroms. In contrast the thickness of the absorbed layer, when only the surfactant is visible at the interface, shows no significant change with increasing polymer concentration