1,749 research outputs found
On the origins of approximations for stochastic chemical kinetics
This paper considers the derivation of approximations for stochastic chemical kinetics governed by the discrete master equation. Here, the concepts of (1) partitioning on the basis of fast and slow reactions as opposed to fast and slow species and (2) conditional probability densities are used to derive approximate, partitioned master equations, which are Markovian in nature, from the original master equation. Under different conditions dictated by relaxation time arguments, such approximations give rise to both the equilibrium and hybrid (deterministic or Langevin equations coupled with discrete stochastic simulation) approximations previously reported. In addition, the derivation points out several weaknesses in previous justifications of both the hybrid and equilibrium systems and demonstrates the connection between the original and approximate master equations. Two simple examples illustrate situations in which these two approximate methods are applicable and demonstrate the two methods' efficiencies
Stochastic simulation of catalytic surface reactions in the fast diffusion limit
The master equation of a lattice gas reaction tracks the probability of visiting all spatial configurations. The large number of unique spatial configurations on a lattice renders master equation simulations infeasible for even small lattices. In this work, a reduced master equation is derived for the probability distribution of the coverages in the infinite diffusion limit. This derivation justifies the widely used assumption that the adlayer is in equilibrium for the current coverages and temperature when all reactants are highly mobile. Given the reduced master equation, two novel and efficient simulation methods of lattice gas reactions in the infinite diffusion limit are derived. The first method involves solving the reduced master equation directly for small lattices, which is intractable in configuration space. The second method involves reducing the master equation further in the large lattice limit to a set of differential equations that tracks only the species coverages. Solution of the reduced master equation and differential equations requires information that can be obtained through short, diffusion-only kinetic Monte Carlo simulation runs at each coverage. These simulations need to be run only once because the data can be stored and used for simulations with any set of kinetic parameters, gas-phase concentrations, and initial conditions. An idealized CO oxidation reaction mechanism with strong lateral interactions is used as an example system for demonstrating the reduced master equation and deterministic simulation techniques
Two classes of quasi-steady-state model reductions for stochastic kinetics
The quasi-steady-state approximation (QSSA) is a model reduction technique used to remove highly reactive species from deterministic models of reaction mechanisms. In many reaction networks the highly reactive intermediates (QSSA species) have populations small enough to require a stochastic representation. In this work we apply singular perturbation analysis to remove the QSSA species from the chemical master equation for two classes of problems. The first class occurs in reaction networks where all the species have small populations and the QSSA species sample zero the majority of the time. The perturbation analysis provides a reduced master equation in which the highly reactive species can sample only zero, and are effectively removed from the model. The reduced master equation can be sampled with the Gillespie algorithm. This first stochastic QSSA reduction is applied to several example reaction mechanisms (including Michaelis-Menten kinetics) [Biochem. Z. 49, 333 (1913)]. A general framework for applying the first QSSA reduction technique to new reaction mechanisms is derived. The second class of QSSA model reductions is derived for reaction networks where non-QSSA species have large populations and QSSA species numbers are small and stochastic. We derive this second QSSA reduction from a combination of singular perturbation analysis and the Omega expansion. In some cases the reduced mechanisms and reaction rates from these two stochastic QSSA models and the classical deterministic QSSA reduction are equivalent; however, this is not usually the case
The stochastic quasi-steady-state assumption: Reducing the model but not the noise
Highly reactive species at small copy numbers play an important role in many biological reaction networks. We have described previously how these species can be removed from reaction networks using stochastic quasi-steady-state singular perturbation analysis (sQSPA). In this paper we apply sQSPA to three published biological models: the pap operon regulation, a biochemical oscillator, and an intracellular viral infection. These examples demonstrate three different potential benefits of sQSPA. First, rare state probabilities can be accurately estimated from simulation. Second, the method typically results in fewer and better scaled parameters that can be more readily estimated from experiments. Finally, the simulation time can be significantly reduced without sacrificing the accuracy of the solution
Near-Infrared Observations of Powerful High-Redshift Radio Galaxies: 4C 40.36 and 4C 39.37
We present near-infrared imaging and spectroscopic observations of two FR II
high-redshift radio galaxies (HzRGs), 4C 40.36 (z=2.3) and 4C 39.37 (z=3.2),
obtained with the Hubble, Keck, and Hale Telescopes. High resolution images
were taken with filters both in and out of strong emission lines, and together
with the spectroscopic data, the properties of the line and continuum emissions
were carefully analyzed. Our analysis of 4C 40.36 and 4C 39.37 shows that
strong emission lines (e.g., [O III] 5007 A and H alpha+[N II]) contribute to
the broad-band fluxes much more significantly than previously estimated (80%
vs. 20-40%), and that when the continuum sources are imaged through line-free
filters, they show an extremely compact morphology with a high surface
brightness. If we use the R^1/4-law parametrization, their effective radii
(r(e)) are only 2-3 kpc while their restframe B-band surface brightnesses at
r(e) are I(B) ~ 18 mag/arcsec^2. Compared with z ~ 1 3CR radio galaxies, the
former is x3-5 smaller, while the latter is 1-1.5 mag brighter than what is
predicted from the I(B)-r(e) correlation. Although exponential profiles produce
equally good fits for 4C 40.36 and 4C 39.37, this clearly indicates that with
respect to the z~1 3CR radio galaxies, the light distribution of these two
HzRGs is much more centrally concentrated. Spectroscopically, 4C 40.36 shows a
flat (fnu=const) continuum while 4C 39.37 shows a spectrum as red as that of a
local giant elliptical galaxy. Although this difference may be explained in
terms of a varying degree of star formation, the similarities of their surface
brightness profiles and the submillimeter detection of 4C 39.37 might suggest
that the intrinsic spectra is equally blue (young stars or an AGN), and that
the difference is the amount of reddening.Comment: 30 pages, 6 tables, 10 figures; Accepted for publication in
Astronomical Journa
Predictive Control for Alleviation of Gust Loads on Very Flexible Aircraft
In this work the dynamics of very flexible aircraft are described by a set of non-linear, multi-disciplinary equations of motion. Primary structural components are represented by a geometrically-exact composite beam model which captures the large dynamic deformations of the aircraft and the interaction between rigid-body and elastic degrees-of-freedom. In addition, an implementation of the unsteady vortex-lattice method capable of handling arbitrary kinematics is used to capture the unsteady, three-dimensional flow-eld around the aircraft as it deforms. Linearization of this coupled nonlinear description, which can in general be about a nonlinear reference state, is performed to yield relatively high-order linear time-invariant state-space models. Subsequent reduction of these models using standard balanced truncation results in low-order models suitable for the synthesis of online, optimization-based control schemes that incorporate actuator constraints. Predictive controllers are synthesized using these reduced-order models and applied to nonlinear simulations of the plant dynamics where they are shown to be superior to equivalent optimal linear controllers (LQR) for problems in which constraints are active
The Optical - Infrared Colors of CORALS QSOs: Searching for Dust Reddening Associated With High Redshift Damped Lyman Alpha Systems
The presence of dust in quasar absorbers, such as damped Lyman alpha (DLA)
systems, may cause the background QSO to appear reddened. We investigate the
extent of this potential reddening by comparing the optical-to-infrared (IR)
colors of QSOs with and without intervening absorbers. Our QSO sample is based
on the Complete Optical and Radio Absorption Line System (CORALS) survey of
Ellison et al (2001). We have obtained near-simultaneous B and K band
magnitudes for subset of the CORALS sample and supplemented our observations
with further measurements published in the literature. To account for
redshift-related color changes, the B-K colors are normalized using the Sloan
Digital Sky Survey (SDSS) QSO composite. The mean normalized B-K color of the
DLA sub-sample is +0.12, whereas the mean for the no-DLA sample is -0.10; both
distributions have RMS scatters ~0.5. Neither a student's T-test nor a KS test
indicate that there is any significant difference between the two color
distributions. Based on simulations which redden the colors of QSOs with
intervening DLAs, we determine a reddening limit which corresponds to E(B-V) <
0.04 (SMC-like extinction) at 99% confidence (3 sigma), assuming that E(B-V) is
the same for all DLAs. Finally, we do not find any general correlation between
absorber properties (such as [Fe/Zn] or neutral hydrogen column density) and
B-K color. One of these two QSOs shows evidence for strong associated
absorption from X-ray observations, an alternative explanation for its very red
color. We conclude that the presence of intervening galaxies causes a minimal
reddening of the background QSO.Comment: Accepted for publication in A
The optically-powerful quasar E1821+643 is associated with a 300-kpc scale FRI radio structure
We present a deep image of the optically-powerful quasar E1821+643 at 18cm
made with the Very Large Array (VLA). This image reveals radio emission, over
280 kpc in extent, elongated way beyond the quasar's host galaxy. Its radio
structure has decreasing surface brightness with increasing distance from the
bright core, characteristic of FRI sources (Fanaroff & Riley 1974). Its radio
luminosity at 5GHz falls in the classification for `radio-quiet' quasars (it is
only 10^23.9 W/Hz/sr; see e.g. Kellermann et al 1994). Its radio luminosity at
151MHz (which is 10^25.3 W/Hz/sr) is at the transition luminosity observed to
separate FRIs and FRIIs. Hitherto, no optically-powerful quasar had been found
to have a conventional FRI radio structure. For searches at low-frequency this
is unsurprising given current sensitivity and plausible radio spectral indices
for radio-quiet quasars. We demonstrate the inevitability of the extent of any
FRqI radio structures being seriously under-estimated by existing targetted
follow-up observations of other optically-selected quasars, which are typically
short exposures of z > 0.3 objects, and discuss the implications for the
purported radio bimodality in quasars.
The nature of the inner arcsec-scale jet in E1821+643, together with its
large-scale radio structure, suggest that the jet-axis in this quasar is
precessing (cf. Galactic jet sources such as SS433). A possible explanation for
this is that its central engine is a binary whose black holes have yet to
coalesce. The ubiquity of precession in `radio-quiet' quasars, perhaps as a
means of reducing the observable radio luminosity expected in highly-accreting
systems, remains to be established.Comment: Accepted by ApJ Letters; higher quality versions of figures available
at http://www-astro.physics.ox.ac.uk/~km
Using Laguerre functions to improve the tuning and performance of predictive functional control
This paper proposes a novel modification to the predictive functional control (PFC) algorithm to facilitate significant improvements in the tuning efficacy. The core concept is the use of an alternative parameterisation of the degrees of freedom in the PFC law. Building on recent insights into the potential of Laguerre functions in traditional MPC (Rossiter et al., 2010; Wang, 2009), the paper develops an appropriate framework for PFC and then demonstrates that these functions can be exploited to allow easier and more effective tuning in PFC as well as facilitating strong constraint handling properties. The proposed design approach and the associated tuning methodology are developed and their efficacy is demonstrated with a number of numerical examples
What Powers the Compact Radio Emission in Nearby Elliptical and S0 Galaxies?
Many nearby early-type (elliptical and S0) galaxies contain weak
(milli-Jansky level) nuclear radio sources on scales a few hundred parsecs or
less. The origin of the radio emission, however, has remained unclear,
especially in volume-limited samples that select intrinsically less luminous
galaxies. Both active galactic nuclei and nuclear star formation have been
suggested as possible mechanisms for producing the radio emission. This paper
utilizes optical spectroscopic information to address this issue. A substantial
fraction of the early-type galaxies surveyed with the Very Large Array by
Wrobel & Heeschen (1991) exhibits detectable optical emission lines in their
nuclei down to very sensitive limits. Comparison of the observed radio
continuum power with that expected from the thermal gas traced by the optical
emission lines implies that the bulk of the radio emission is nonthermal. Both
the incidence and the strength of optical line emission correlate with the
radio power. At a fixed line luminosity, ellipticals have stronger radio cores
than S0s. The relation between radio power and line emission observed in this
sample is consistent with the low-luminosity extension of similar relations
seen in classical radio galaxies and luminous Seyfert nuclei. A plausible
interpretation of this result is that the weak nuclear sources in nearby
early-type galaxies are the low-luminosity counterparts of more powerful AGNs.
The spectroscopic evidence supports this picture. Most of the emission-line
objects are optically classified as Seyfert nuclei or low-ionization nuclear
emission-line regions (LINERs), the majority of which are likely to be
accretion-powered sources.Comment: LaTex, 16 pages including embedded figures. Accepted for publication
in the Astrophysical Journa
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