Electrophoretic behavior of streptavidin complexed to a biotinylated probe : A functional screening assay for biotin-binding proteins

The biotin-binding protein streptavidin exhibits a high stability against thermal denaturation, especially when complexed to biotin. Herein we show that, in sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), streptavidin is stabilized at high temperature in the presence of biotinylated fluorescent probes, such as biotin-4-fluorescein, which is incorporated within the binding pocket. In nondenaturing SDS-PAGE, streptavidin is detectable when complexed with biotin-4-fluorescein using a UV-transilluminator. Using biotin-4-fluorescein, the detection limit of streptavidin lies in the same range as with Coomassie blue staining. The functionality of streptavidin mutants can readily be assessed from crude bacterial extracts using biotin-4-fluorescein as a probe in nondenaturing SDS-PAGE

Modelling Molecular Motors as Folding-Unfolding Cycles

We propose a model for motor proteins based on a hierarchical Hamiltonian that we have previously introduced to describe protein folding. The proposed motor model has high efficiency and is consistent with a linear load-velocity response. The main improvement with respect to previous models is that this description suggests a connection between folding and function of allosteric proteins.Comment: 5 pages RevTeX, 2 Postscript figures, replaced due to LaTeX proble

Structure factor and dynamics of the helix-coil transition

Thermodynamical properties of the helix-coil transition were successfully described in the past by the model of Lifson, Poland and Sheraga. Here we compute the corresponding structure factor and show that it possesses a universal scaling behavior near the transition point, even when the transition is of first order. Moreover, we introduce a dynamical version of this model, that we solve numerically. A Langevin equation is also proposed to describe the dynamics of the density of hydrogen bonds. Analytical solution of this equation shows dynamical scaling near the critical temperature and predicts a gelation phenomenon above the critical temperature. In the case when comparison of the two dynamical approaches is possible, the predictions of our phenomenological theory agree with the results of the Monte Carlo simulations.Comment: 11 pages, 7 figure

On the density profile of the globular cluster M92

We present new number density and surface brightness profiles for the globular cluster M92 (NGC 6341). These profiles are calculated from optical images collected with the CCD mosaic camera MegaCam at the Canada-France-Hawaii-Telescope and with the Advanced Camera for Surveys on the Hubble Space Telescope. The ground-based data were supplemented with the Sloan Digital Sky Survey photometric catalog. Special care was taken to discriminate candidate cluster stars from field stars and to subtract the background contamination from both profiles. By examining the contour levels of the number density, we found that the stellar distribution becomes clumpy at radial distances larger than about 13 arcminutes, and there is no preferred orientation of contours in space. We performed detailed fits of King and Wilson models to the observed profiles. The best-fit models underestimate the number density inside the core radius. Wilson models better represent the observations, in particular in the outermost cluster regions: the good global agreement of these models with the observations suggests that there is no need to introduce an extra-tidal halo to explain the radial distribution of stars at large radial distances. The best-fit models for the number density and the surface brightness profiles are different, even though they are based on the same observations. Additional tests support the evidence that this fact reflects the difference in the radial distribution of the stellar tracers that determine the observed profiles (main sequence stars for the number density, bright evolved stars for the surface brightness).Comment: 18 pages, 10 figures, Accepted by A

Periodically kicked turbulence

Periodically kicked turbulence is theoretically analyzed within a mean field theory. For large enough kicking strength A and kicking frequency f the Reynolds number grows exponentially and then runs into some saturation. The saturation level can be calculated analytically; different regimes can be observed. For large enough Re we find the saturation level to be proportional to A*f, but intermittency can modify this scaling law. We suggest an experimental realization of periodically kicked turbulence to study the different regimes we theoretically predict and thus to better understand the effect of forcing on fully developed turbulence.Comment: 4 pages, 3 figures. Phys. Rev. E., in pres