Electrostatics in the Stability and Misfolding of the Prion Protein: Salt Bridges, Self-Energy, and Solvation

Using a recently developed mesoscopic theory of protein dielectrics, we have calculated the salt bridge energies, total residue electrostatic potential energies, and transfer energies into a low dielectric amyloid-like phase for 12 species and mutants of the prion protein. Salt bridges and self energies play key roles in stabilizing secondary and tertiary structural elements of the prion protein. The total electrostatic potential energy of each residue was found to be invariably stabilizing. Residues frequently found to be mutated in familial prion disease were among those with the largest electrostatic energies. The large barrier to charged group desolvation imposes regional constraints on involvement of the prion protein in an amyloid aggregate, resulting in an electrostatic amyloid recruitment profile that favours regions of sequence between alpha helix 1 and beta strand 2, the middles of helices 2 and 3, and the region N-terminal to alpha helix 1. We found that the stabilization due to salt bridges is minimal among the proteins studied for disease-susceptible human mutants of prion protein

Familiarity and strangeness: seeing everyday practices of punishment and resistance in Holloway Prison

London’s Holloway Prison, the largest women’s prison in western Europe, closed in 2016. The impact of the closure on the women incarcerated in Holloway, and the prison’s place in the local community, is the focus of a project led by Islington Museum. Here, we develop an innovation, emotion-led methodology to explore photographs of the decommissioned Holloway, asking what they communicate about experiences of imprisonment and practices of punishment. The images illustrate the strategies of control, mechanisms of punishment and tactics of resistance that operate through the carceral space. From a feminist, anti-carceral perspective, we emphasise the importance of seeing prison spaces and attending to the emotional responses generated. We offer a creative intervention into dominant government and media narratives of Holloway’s closure and suggest that considering what it is that feels familiar and strange about carceral spaces has the potential to operate as a form of anti-carceral work

Isomonodromy aspects of the tt* equations of Cecotti and Vafa I. Stokes data

We describe all smooth solutions of the two-function tt*-Toda equations (a version of the tt* equations, or equations for harmonic maps into SL(n,R)/SO(n)) in terms of (i) asymptotic data, (ii) holomorphic data, and (iii) monodromy data. This allows us to find all solutions with integral Stokes data. These include solutions associated to nonlinear sigma models (quantum cohomology) or Landau-Ginzburg models (unfoldings of singularities), as conjectured by Cecotti and Vafa.Comment: 35 pages, 3 figures. Minor revisions for compatibility with the recently posted Part II (arXiv:1312.4825

Leading-edge slat optimization for maximum airfoil lift

A numerical procedure for determining the position (horizontal location, vertical location, and deflection) of a leading edge slat that maximizes the lift of multielement airfoils is presented. The structure of the flow field is calculated by iteratively coupling potential flow and boundary layer analysis. This aerodynamic calculation is combined with a constrained function minimization analysis to determine the position of a leading edge slat so that the suction peak on the nose of the main airfoil is minized. The slat position is constrained by the numerical procedure to ensure an attached boundary layer on the upper surface of the slat and to ensure negligible interaction between the slat wake and the boundary layer on the upper surface of the main airfoil. The highest angle attack at which this optimized slat position can maintain attached flow on the main airfoil defines the optimum slat position for maximum lift. The design method is demonstrated for an airfoil equipped with a leading-edge slat and a trailing edge, single-slotted flap. The theoretical results are compared with experimental data, obtained in the Ames 40 by 80 Foot Wind Tunnel, to verify experimentally the predicted slat position for maximum lift. The experimentally optimized slat position is in good agreement with the theoretical prediction, indicating that the theoretical procedure is a feasible design method