Geometry Analysis of an Inverse-Geometry Volumetric CT System With Multiple Detector Arrays

An inverse-geometry volumetric CT (IGCT) system for imaging in a single fast rotation without cone-beam artifacts is being developed. It employs a large scanned source array and a smaller detector array. For a single-source/single-detector implementation, the FOV is limited to a fraction of the source size. Here we explore options to increase the FOV without increasing the source size by using multiple detectors spaced apart laterally to increase the range of radial distances sampled. We also look at multiple source array systems for faster scans. To properly reconstruct the FOV, Radon space must be sufficiently covered and sampled in a uniform manner. Optimal placement of the detectors relative to the source was determined analytically given system constraints (5cm detector width, 25cm source width, 45cm source-to-isocenter distance). For a 1x3 system (three detectors per source) detector spacing (DS) was 18deg and source-to-detector distances (SDD) were 113, 100 and 113cm to provide optimum Radon sampling and a FOV of 44cm. For multiple-source systems, maximum angular spacing between sources cannot exceed 125deg since detectors corresponding to one source cannot be occluded by a second source. Therefore, for 2x3 and 3x3 systems using the above DS and SDD, optimum spacing between sources is 115deg and 61deg respectively, requiring minimum scan rotations of 115deg and 107deg. Also, a 3x3 system can be much faster for full 360deg dataset scans than a 2x3 system (120deg vs. 245deg). We found that a significantly increased FOV can be achieved while maintaining uniform radial sampling as well as a substantial reduction in scan time using several different geometries. Further multi-parameter optimization is underway

Study of Increased Radiation When an X-ray Tube is Placed in a Strong Magnetic Field

When a fixed anode x-ray tube is placed in a magnetic field (B) that is parallel to the anode-cathode axis, the x-ray exposure increases with increasing B. It was hypothesized that the increase was caused by backscattered electrons which were constrained by B and reaccelerated by the electric field onto the x-ray tube target. We performed computer simulations and physical experiments to study the behavior of the backscattered electrons in a magnetic field, and their effects on the radiation output, x-ray spectrum, and off-focal radiation. A Monte Carlo program (EGS4) was used to generate the combined energy and angular distribution of the backscattered electrons. The electron trajectories were traced and their landing locations back on the anode were calculated. Radiation emission from each point was modeled with published data (IPEM Report 78), and thus the exposure rate and x-ray spectrum with the contribution of backscattered electrons could be predicted. The point spread function for a pencil beam of electrons was generated and then convolved with the density map of primary electrons incident on the anode as simulated with a finite element program (Opera-3d, Vector Fields, UK). The total spatial distribution of x-ray emission could then be calculated. Simulations showed that for an x-ray tube working at 65 kV, about 54% of the electrons incident on the target were backscattered. In a magnetic field of 0.5 T, although the exposure would be increased by 33%, only a small fraction of the backscattered electrons landed within the focal spot area. The x-ray spectrum was slightly shifted to lower energies and the half value layer (HVL) was reduced by about 6%. Measurements of the exposure rate, half value layer and focal spot distribution were acquired as functions of B. Good agreement was observed between experimental data and simulation results. The wide spatial distribution of secondary x-ray emission can degrade the MTF of the x-ray system at low spatial frequencies for B {le} 0.5 T

Development and testing of a database of NIH research funding of AAPM members: A report from the AAPM Working Group for the Development of a Research Database (WGDRD).

PURPOSE: To produce and maintain a database of National Institutes of Health (NIH) funding of the American Association of Physicists in Medicine (AAPM) members, to perform a top-level analysis of these data, and to make these data (hereafter referred to as the AAPM research database) available for the use of the AAPM and its members. METHODS: NIH-funded research dating back to 1985 is available for public download through the NIH exporter website, and AAPM membership information dating back to 2002 was supplied by the AAPM. To link these two sources of data, a data mining algorithm was developed in Matlab. The false-positive rate was manually estimated based on a random sample of 100 records, and the false-negative rate was assessed by comparing against 99 member-supplied PI_ID numbers. The AAPM research database was queried to produce an analysis of trends and demographics in research funding dating from 2002 to 2015. RESULTS: A total of 566 PI_ID numbers were matched to AAPM members. False-positive and -negative rates were respectively 4% (95% CI: 1-10%, N = 100) and 10% (95% CI: 5-18%, N = 99). Based on analysis of the AAPM research database, in 2015 the NIH awarded $USD 110M to members of the AAPM. The four NIH institutes which historically awarded the most funding to AAPM members were the National Cancer Institute, National Institute of Biomedical Imaging and Bioengineering, National Heart Lung and Blood Institute, and National Institute of Neurological Disorders and Stroke. In 2015, over 85$116M, which is lower than the historic mean of $120M (in 2015 USD). CONCLUSIONS: A database of NIH-funded research awarded to AAPM members has been developed and tested using a data mining approach, and a top-level analysis of funding trends has been performed. Current funding of AAPM members is lower than the historic mean. The database will be maintained by members of the Working group for the development of a research database (WGDRD) on an annual basis, and is available to the AAPM, its committees, working groups, and members for download through the AAPM electronic content website. A wide range of questions regarding financial and demographic funding trends can be addressed by these data. This report has been approved for publication by the AAPM Science Council

Pediatric Patient Surface Model Atlas Generation and X-Ray Skin Dose Estimation

Fluoroscopy is used in a wide variety of examinations and procedures to diagnose or treat patients in modern pediatric medicine. Although these image guided interventions have many advantages in treating pediatric patients, understanding the deterministic and long term stochastic effects of ionizing radiation are of particular importance for this patient demographic. Therefore, quantitative estimation and visualization of radiation exposure distribution, and dose accumulation over the course of a procedure, is crucial for intra-procedure dose tracking and long term monitoring for risk assessment. Personalized pediatric models are necessary for precise determination of patient-X-ray interactions. One way to obtain such a model is to collect data from a population of pediatric patients, establish a population based generative pediatric model and use the latter for skin dose estimation. In this paper, we generate a population model for pediatric patient using data acquired by two RGB-D cameras from different views. A generative atlas was established using template registration. We evaluated the registered templates and generative atlas by computing the mean vertex error to the associated point cloud. The evaluation results show that the mean vertex error reduced from 25.2 ± 12.9 mm using an average surface model to 18.5 ± 9.4mm using specifically estimated pediatric surface model using the generated atlas. Similarly, the dose estimation error was halved from 10.6 ± 8.5% using the average surface model to 5.9 ± 9.3% using the personalized surface estimates

Immigration Rates in Fragmented Landscapes – Empirical Evidence for the Importance of Habitat Amount for Species Persistence

BACKGROUND: The total amount of native vegetation is an important property of fragmented landscapes and is known to exert a strong influence on population and metapopulation dynamics. As the relationship between habitat loss and local patch and gap characteristics is strongly non-linear, theoretical models predict that immigration rates should decrease dramatically at low levels of remaining native vegetation cover, leading to patch-area effects and the existence of species extinction thresholds across fragmented landscapes with different proportions of remaining native vegetation. Although empirical patterns of species distribution and richness give support to these models, direct measurements of immigration rates across fragmented landscapes are still lacking. METHODOLOGY/PRINCIPAL FINDINGS: Using the Brazilian Atlantic forest marsupial Gray Slender Mouse Opossum (Marmosops incanus) as a model species and estimating demographic parameters of populations in patches situated in three landscapes differing in the total amount of remaining forest, we tested the hypotheses that patch-area effects on population density are apparent only at intermediate levels of forest cover, and that immigration rates into forest patches are defined primarily by landscape context surrounding patches. As expected, we observed a positive patch-area effect on M. incanus density only within the landscape with intermediate forest cover. Density was independent of patch size in the most forested landscape and the species was absent from the most deforested landscape. Specifically, the mean estimated numbers of immigrants into small patches were lower in the landscape with intermediate forest cover compared to the most forested landscape. CONCLUSIONS/SIGNIFICANCE: Our results reveal the crucial importance of the total amount of remaining native vegetation for species persistence in fragmented landscapes, and specifically as to the role of variable immigration rates in providing the underlying mechanism that drives both patch-area effects and species extinction thresholds

Stochastic population growth in spatially heterogeneous environments

Classical ecological theory predicts that environmental stochasticity increases extinction risk by reducing the average per-capita growth rate of populations. To understand the interactive effects of environmental stochasticity, spatial heterogeneity, and dispersal on population growth, we study the following model for population abundances in $n$ patches: the conditional law of $X_{t+dt}$ given $X_t=x$ is such that when $dt$ is small the conditional mean of $X_{t+dt}^i-X_t^i$ is approximately $[x^i\mu_i+\sum_j(x^j D_{ji}-x^i D_{ij})]dt$, where $X_t^i$ and $\mu_i$ are the abundance and per capita growth rate in the $i$-th patch respectivly, and $D_{ij}$ is the dispersal rate from the $i$-th to the $j$-th patch, and the conditional covariance of $X_{t+dt}^i-X_t^i$ and $X_{t+dt}^j-X_t^j$ is approximately $x^i x^j \sigma_{ij}dt$. We show for such a spatially extended population that if $S_t=(X_t^1+...+X_t^n)$ is the total population abundance, then $Y_t=X_t/S_t$, the vector of patch proportions, converges in law to a random vector $Y_\infty$ as $t\to\infty$, and the stochastic growth rate $\lim_{t\to\infty}t^{-1}\log S_t$ equals the space-time average per-capita growth rate \sum_i\mu_i\E[Y_\infty^i] experienced by the population minus half of the space-time average temporal variation \E[\sum_{i,j}\sigma_{ij}Y_\infty^i Y_\infty^j] experienced by the population. We derive analytic results for the law of $Y_\infty$, find which choice of the dispersal mechanism $D$ produces an optimal stochastic growth rate for a freely dispersing population, and investigate the effect on the stochastic growth rate of constraints on dispersal rates. Our results provide fundamental insights into "ideal free" movement in the face of uncertainty, the persistence of coupled sink populations, the evolution of dispersal rates, and the single large or several small (SLOSS) debate in conservation biology.Comment: 47 pages, 4 figure

The Relative Influence of Habitat Amount and Configuration on Genetic Structure Across Multiple Spatial Scales

Despite strong interest in understanding how habitat spatial structure shapes the genetics of populations, the relative importance of habitat amount and configuration for patterns of genetic differentiation remains largely unexplored in empirical systems. In this study, we evaluate the relative influence of, and interactions among, the amount of habitat and aspects of its spatial configuration on genetic differentiation in the pitcher plant midge, Metriocnemus knabi. Larvae of this species are found exclusively within the water-filled leaves of pitcher plants (Sarracenia purpurea) in a system that is naturally patchy at multiple spatial scales (i.e., leaf, plant, cluster, peatland). Using generalized linear mixed models and multimodel inference, we estimated effects of the amount of habitat, patch size, interpatch distance, and patch isolation, measured at different spatial scales, on genetic differentiation (F ST) among larval samples from leaves within plants, plants within clusters, and clusters within peatlands. Among leaves and plants, genetic differentiation appears to be driven by female oviposition behaviors and is influenced by habitat isolation at a broad (peatland) scale. Among clusters, gene flow is spatially restricted and aspects of both the amount of habitat and configuration at the focal scale are important, as is their interaction. Our results suggest that both habitat amount and configuration can be important determinants of genetic structure and that their relative influence is scale dependent