80 research outputs found
Metabolic Engineering of Potato Carotenoid Content through Tuber-Specific Overexpression of a Bacterial Mini-Pathway
BACKGROUND: Since the creation of āGolden Riceā, biofortification of plant-derived foods is a promising strategy for the alleviation of nutritional deficiencies. Potato is the most important staple food for mankind after the cereals rice, wheat and maize, and is extremely poor in provitamin A carotenoids. METHODOLOGY: We transformed potato with a mini-pathway of bacterial origin, driving the synthesis of beta-carotene (Provitamin A) from geranylgeranyl diphosphate. Three genes, encoding phytoene synthase (CrtB), phytoene desaturase (CrtI) and lycopene beta-cyclase (CrtY) from Erwinia, under tuber-specific or constitutive promoter control, were used. 86 independent transgenic lines, containing six different promoter/gene combinations, were produced and analyzed. Extensive regulatory effects on the expression of endogenous genes for carotenoid biosynthesis are observed in transgenic lines. Constitutive expression of the CrtY and/or CrtI genes interferes with the establishment of transgenosis and with the accumulation of leaf carotenoids. Expression of all three genes, under tuber-specific promoter control, results in tubers with a deep yellow (āgoldenā) phenotype without any adverse leaf phenotypes. In these tubers, carotenoids increase approx. 20-fold, to 114 mcg/g dry weight and beta-carotene 3600-fold, to 47 mcg/g dry weight. CONCLUSIONS: This is the highest carotenoid and beta-carotene content reported for biofortified potato as well as for any of the four major staple foods (the next best event being āGolden Rice 2ā, with 31 mcg/g dry weight beta-carotene). Assuming a beta-carotene to retinol conversion of 6ā¶1, this is sufficient to provide 50% of the Recommended Daily Allowance of Vitamin A with 250 gms (fresh weight) of āgoldenā potatoes
Large Scale Benchmark of Materials Design Methods
Lack of rigorous reproducibility and validation are major hurdles for
scientific development across many fields. Materials science in particular
encompasses a variety of experimental and theoretical approaches that require
careful benchmarking. Leaderboard efforts have been developed previously to
mitigate these issues. However, a comprehensive comparison and benchmarking on
an integrated platform with multiple data modalities with both perfect and
defect materials data is still lacking. This work introduces
JARVIS-Leaderboard, an open-source and community-driven platform that
facilitates benchmarking and enhances reproducibility. The platform allows
users to set up benchmarks with custom tasks and enables contributions in the
form of dataset, code, and meta-data submissions. We cover the following
materials design categories: Artificial Intelligence (AI), Electronic Structure
(ES), Force-fields (FF), Quantum Computation (QC) and Experiments (EXP). For
AI, we cover several types of input data, including atomic structures,
atomistic images, spectra, and text. For ES, we consider multiple ES
approaches, software packages, pseudopotentials, materials, and properties,
comparing results to experiment. For FF, we compare multiple approaches for
material property predictions. For QC, we benchmark Hamiltonian simulations
using various quantum algorithms and circuits. Finally, for experiments, we use
the inter-laboratory approach to establish benchmarks. There are 1281
contributions to 274 benchmarks using 152 methods with more than 8 million
data-points, and the leaderboard is continuously expanding. The
JARVIS-Leaderboard is available at the website:
https://pages.nist.gov/jarvis_leaderboar
Distinct Effects of p19 RNA Silencing Suppressor on Small RNA Mediated Pathways in Plants
RNA silencing is one of the main defense mechanisms employed by plants to fight viruses. In change, viruses have evolved silencing suppressor proteins to neutralize antiviral silencing. Since the endogenous and antiviral functions of RNA silencing pathway rely on common components, it was suggested that viral suppressors interfere with endogenous silencing pathway contributing to viral symptom development. In this work, we aimed to understand the effects of the tombusviral p19 suppressor on endogenous and antiviral silencing during genuine virus infection. We showed that ectopically expressed p19 sequesters endogenous small RNAs (sRNAs) in the absence, but not in the presence of virus infection. Our presented data question the generalized model in which the sequestration of endogenous sRNAs by the viral suppressor contributes to the viral symptom development. We further showed that p19 preferentially binds the perfectly paired ds-viral small interfering RNAs (vsiRNAs) but does not select based on their sequence or the type of the 5ā nucleotide. Finally, co-immunoprecipitation of sRNAs with AGO1 or AGO2 from virus-infected plants revealed that p19 specifically impairs vsiRNA loading into AGO1 but not AGO2. Our findings, coupled with the fact that p19-expressing wild type Cymbidium ringspot virus (CymRSV) overcomes the Nicotiana benthamiana silencing based defense killing the host, suggest that AGO1 is the main effector of antiviral silencing in this host-virus combination
Phase transition in spin systems with various types of fluctuations
Various types ordering processes in systems with large fluctuation are overviewed. Generally, the so-called orderādisorder phase transition takes place in competition between the interaction causing the system be ordered and the entropy causing a random disturbance. Nature of the phase transition strongly depends on the type of fluctuation which is determined by the structure of the order parameter of the system. As to the critical property of phase transitions, the concept āuniversality of the critical phenomenaā is well established. However, we still find variety of features of ordering processes. In this article, we study effects of various mechanisms which bring large fluctuation in the system, e.g., continuous symmetry of the spin in low dimensions, contradictions among interactions (frustration), randomness of the lattice, quantum fluctuations, and a long range interaction in off-lattice systems
Prediction of the Size Distributions of MethanolāEthanol Clusters Detected in VUV Laser/Time-of-Flight Mass Spectrometry
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