The NILE Project — Advances in the Conversion of Lignocellulosic Materials into Ethanol

NILE ("New Improvements for Lignocellulosic Ethanol") was an integrated European project (2005-2010) devoted to the conversion of lignocellulosic raw materials to ethanol. The main objectives were to design novel enzymes suitable for the hydrolysis of cellulose to glucose and new yeast strains able to efficiently converting all the sugars present in lignocellulose into ethanol. The project also included testing these new developments in an integrated pilot plant and evaluating the environmental and socio-economic impacts of implementing lignocellulosic ethanol on a large scale. Two model raw materials – spruce and wheat straw – both preconditioned with similar pretreatments, were used. Several approaches were explored to improve the saccharification of these pretreated raw materials such as searching for new efficient enzymes and enzyme engineering. Various genetic engineering methods were applied to obtain stable xylose- and arabinose-fermenting Saccharomyces cerevisiae strains that tolerate the toxic compounds present in lignocellulosic hydrolysates. The pilot plant was able to treat 2 tons of dry matter per day, and hydrolysis and fermentation could be run successively or simultaneously. A global model integrating the supply chain was used to assess the performance of lignocellulosic ethanol from an economical and environmental perspective. It was found that directed evolution of a specific enzyme of the cellulolytic cocktail produced by the industrial fungus, Trichoderma reesei, and modification of the composition of this cocktail led to improvements of the enzymatic hydrolysis of pretreated raw material. These results, however, were difficult to reproduce at a large scale. A substantial increase in the ethanol conversion yield and in specific ethanol productivity was obtained through a combination of metabolic engineering of yeast strains and fermentation process development. Pilot trials confirmed the good behaviour of the yeast strains in industrial conditions as well as the suitability of lignin residues as fuels. The ethanol cost and the greenhouse gas emissions were highly dependent on the supply chain but the best performing supply chains showed environmental and economic benefits. From a global standpoint, the results showed the necessity for an optimal integration of the process to co-develop all the steps of the process and to test the improvements in a flexible pilot plant, thus allowing the comparison of various configurations and their economic and environmental impacts to be determined. <br> Le projet NILE, acronyme de "New Improvements for Lignocellulosic Ethanol", était un projet européen (2005-2010) consacré à la conversion des matières premières lignocellulosiques en éthanol. Ses principaux objectifs étaient de concevoir de nouvelles enzymes adaptées à l’hydrolyse de la cellulose en glucose et de nouvelles souches de levure capables de convertir efficacement tous les sucres présents dans la lignocellulose en éthanol. Une autre partie du projet consistait à tester ces nouveaux systèmes dans une installation pilote et à évaluer les impacts environnementaux et socio-économiques de la production et utilisation à grande échelle d’éthanol lignocellulosique. Deux matières premières modèles (l’épicéa et la paille de blé) prétraitées de façon semblable, ont été étudiées. Différentes approches ont été tentées pour améliorer la saccharification de ces matières premières, par exemple, la recherche de nouvelles enzymes efficaces ou l’ingénierie d’enzymes. Plusieurs stratégies d’ingénierie génétique ont été utilisées pour obtenir des souches stables de Saccharomyces cerevisiae capables de fermenter le xylose et l’arabinose, et de tolérer les composés toxiques présents dans les hydrolysats lignocellulosiques. L’installation pilote pouvait traiter 2 tonnes de matières sèches par jour, et l’hydrolyse et la fermentation pouvaient être menées successivement ou simultanément. Un modèle global intégrant la chaîne d’approvisionnement en matière première a servi à évaluer les performances économiques et environnementales de la production d’éthanol lignocellulosique. L’évolution dirigée d’une enzyme du cocktail cellulolytique produit par le champignon Trichoderma reesei, et la modification de la composition de ce cocktail améliorent l’hydrolyse enzymatique des matières premières prétraitées. Cependant, ces résultats n’ont pu être reproduits à grande échelle. Le rendement de conversion et la productivité spécifique en éthanol ont été sensiblement augmentés grâce à l’ingénierie métabolique des souches de levure et au développement d’un procédé optimal de fermentation. Les essais en pilote ont confirmé le bon comportement de ces souches de levure en conditions industrielles ainsi que la possibilité d’utiliser les résidus riches en lignine comme combustible. Le coût de production de l’éthanol et le bilan des émissions de gaz à effet de serre étaient très dépendants des sources d’énergie utilisées. D’un point de vue plus global, les résultats ont montré que l’optimisation du procédé nécessite de codévelopper toutes les étapes de façon intégrée et de valider les améliorations dans une installation pilote, afin notamment de pouvoir comparer différentes configurations et d’en déterminer les effets sur l’économie du procédé et ses impacts environnementaux

Surface mobility of Ag on Pd(100) measured by specular helium scattering

We study the deposition and the very first steps of nucleation and growth of Ag on Pd(100) with thermal energy atom scattering. This technique is a very sensitive and nonperturbing probe to surface point defects, which permits an in situ and in-time monitoring of the deposition. The intention of this paper is to give a detailed description of the approach used in our work. The form of the specularly reflected helium signal as a function of coverage and surface temperature is compared to a theoretical curve, which is computed by solving a system of rate equations that describe the formation and destruction of clusters during the deposition process. The analysis of the experimental data gives two main results. The diffusion parameters (activation barrier E/sub d/=0.37+or-0.03 eV and preexponential factor nu /sub 0/=8*10/sup 9/ s/sup -1/) have been extracted for the system Ag on Pd(100). We find furthermore that all silver atoms impinging on a zone of 6.1 AA around an adatom on the surface are captured by it at surface temperatures well below the onset of thermally activated mobility. The origin of this phenomenon is discussed and tentatively assigned to a combined effect of transient and neighbor driven mobility

Report of the ICES\NAFO Joint Working Group on Deep-water Ecology (WGDEC), 11–15 March 2013, Floedevigen, Norway.

On 11 February 2013, the joint ICES/NAFO WGDEC, chaired by Francis Neat (UK) and attended by ten members met at the Institute for Marine Research in Floedevi-gen, Norway to consider the terms of reference (ToR) listed in Section 2. WGDEC was requested to update all records of deep-water vulnerable marine eco-systems (VMEs) in the North Atlantic. New data from a range of sources including multibeam echosounder surveys, fisheries surveys, habitat modelling and seabed imagery surveys was provided. For several areas across the North Atlantic, WGDEC makes recommendations for areas to be closed to bottom fisheries for the purposes of conservation of VMEs

Morphology and evolution of size-selected metallic clusters deposited on a metal surface: Ag19+ / Pd(100)

We study size-selected deposition of Ag/sub 19//sup +/ clusters on Pd(100) at total kinetic energies of 20 and 95 eV using thermal energy atom scattering and molecular-dynamics simulations. Contrary to the case of Ag/sub 7/ where fragmentation is crucial to explain the data, the deposition leads at low temperature to noncompact structures localized around the impact point. We propose a model in which morphology changes take place between 200 and 300 K resulting in well-separated compact structures

Space- and time-resolved observation of extreme laser frequency upshifting during ultrafast-ionization

A 65-fs, 800-nm, 2-TW laser pulse propagating through a nitrogen gas jet has been experimentally studied by 90 Thomson scattering. Time-integrated spectra of scattered light show unprecedented broadening towards the blue which exceeds 300 nm. Images of the scattering region provide for the first time a space- and time-resolved description of the process leading quite regularly to such a large upshift. The mean shifting rate was as high as dk/dt3A ̊/fs, never observed before. Interferometry shows that it occurs after partial laser defocusing. Numerical simulations prove that such an upshift is consistent with a laser-gas late interaction, when laser intensity has decreased well below relativistic values (a0 1) and ionization process involves most of the laser pulse. This kind of interaction makes spectral tuning of ultrashort intense laser pulses possible in a large spectral range. VC 2013 AIP Publishing LLC. [http://dx.doi.org/10.1063/1.4818602

Multi-criteria Resource Allocation in Modal Hard Real-Time Systems

In this paper, a novel resource allocation approach dedicated to hard real-time systems with distinctive operational modes is proposed. The aim of this approach is to reduce the energy dissipation of the computing cores by either powering them off or switching them into energy-saving states while still guaranteeing to meet all timing constraints. The approach is illustrated with two industrial applications, an engine control management and an engine control unit. Moreover, the amount of data to be migrated during the mode change is minimised. Since the number of processing cores and their energy dissipation are often negatively correlated with the amount of data to be migrated during the mode change, there is some trade-off between these values, which is also analysed in this paper

Detection of Mycobacterium leprae DNA from Archaeological Skeletal Remains in Japan Using Whole Genome Amplification and Polymerase Chain Reaction

BACKGROUND: Identification of pathogen DNA from archaeological human remains is a powerful tool in demonstrating that the infectious disease existed in the past. However, it is very difficult to detect trace amounts of DNA remnants attached to the human skeleton, especially from those buried in a humid atmosphere with a relatively high environmental temperature such as in Asia. METHODOLOGY/PRINCIPAL FINDINGS: Here we demonstrate Mycobacterium leprae DNA from archaeological skeletal remains in Japan by polymerase chain reaction, DNA sequencing and single nucleotide polymorphism (SNP) analysis. In addition, we have established a highly sensitive method of detecting DNA using a combination of whole genome amplification and polymerase chain reaction, or WGA-PCR, which provides superior sensitivity and specificity in detecting DNA from trace amounts of skeletal materials. CONCLUSION/SIGNIFICANCE: We have detected M. leprae DNA in archaeological skeletal remains for the first time in the Far East. Its SNP genotype corresponded to type 1; the first detected case worldwide of ancient M. leprae DNA. We also developed a highly sensitive method to detect ancient DNA by utilizing whole genome amplification

Use of Short Tandem Repeat Sequences to Study Mycobacterium leprae in Leprosy Patients in Malawi and India

Molecular typing has provided an important tool for studies of many pathogens. Such methods could be particularly useful in studies of leprosy, given the many outstanding questions about the pathogenesis and epidemiology of this disease. The approach is particularly difficult with leprosy, however, because of the genetic homogeneity of M. leprae and our inability to culture it. This paper describes molecular epidemiological studies carried out on leprosy patients in Malawi and in India, using short tandem repeat sequences (STRS) as markers of M. leprae strains. It reveals evidence for continuous changes in these markers within individual patients over time, and for selection of different STRS-defined strains between different tissues (skin and nerve) in the same patient. Comparisons between patients collected under different circumstances reveal the uses and limitations of the approach—STRS analysis may in some circumstances provide a means to trace short transmission chains, but it does not provide a robust tool for distinguishing between relapse and reinfection. This encourages further work to identify genetic markers with different stability characteristics for incorporation into epidemiological studies of leprosy

X-ray radiation from ions with K-shell vacancies

Abstract New types of space resolved X-ray spectra produced in light matter experiments with high intensity lasers have been investigated experimentally and theoretically. This type of spectra is characterised by the disappearance of distinct resonance line emission and the appearance of very broad emission structures due to the dielectronic satellite transitions associated to the resonance lines. Atomic data calculations have shown, that rather exotic states with K-shell vacancies are involved. For quantitative spectra interpretation we developed a model for dielectronic satellite accumulation (DSA-model) in cold dense optically thick plasmas which are tested by rigorous comparison with space resolved spectra from ns-lasers. In experiments with laser intensities up to 10 19 W/cm 2 focused into nitrogen gas targets, hollow ion configurations are observed by means of soft X-ray spectroscopy. It is shown that transitions in hollow ions can be used for plasma diagnostic. The determination of the electron temperature in the long lasting recombining regime is demonstrated. In Light-matter interaction experiments with extremely high contrast (up to 10 10 ) short pulse (400 fs) lasers electron densities of n e ≈3×10 23 cm −3 at temperatures between kT e =200–300 eV have been determined by means of spectral simulations developed previously for ns-laser produced plasmas. Expansion velocities are determined analysing asymmetric optically thick line emission. Further, the results are checked by observing the spectral windows involving the region about the He α -line and the region from the He β -line to the He-like continuum. Finally, plasmas of solid density are characteristic in experiments with heavy ion beams heating massive targets. We report the first spectroscopic investigations in plasmas of this type with results on solid neon heated by Ar-ions. A spectroscopic method for the determination of the electron temperature in extreme optically thick plasmas is developed