Un nouvel Indice Diatomique Pratique pour l'évaluation de la qualité des eaux en réseau de surveillance

L'Indice de Polluosensibilité Spécifique (IPS) est considéré comme l'un des indices diatomiques les plus performants pour l'évaluation de la qualité des cours d'eau. Son utilisation en réseau de surveillance reste cependant limitée en raison de la nécessité de travailler au niveau spécifique voire infraspécifique et de la systématique en perpétuelle évolution. A l'opposé, l'Indice Diatomique Générique (IDG) est plus accessible dans sa mise en oeuvre mais ne permet pas d'obtenir des résultats très fiables. Un nouvel Indice Diatomique Pratique (IDP) a donc été mis au point sur un bassin versant expérimental à partir d'un jeu de 86 relevés. Dans un premier temps, les inventaires ont été classés en fonction des écarts observés entre IPS et IDG. Dans un second temps, ont été identifiées les espèces responsables de ces écarts en prenant en compte celles présentant une abondance relative supérieure à 5 % et une différence de polluosensibilité avec le genre correspondant supérieure ou égale à 0,4. Plusieurs IDP ont été mis au point et leurs performances, par rapport à l'IPS, étudiées. Il apparaît que la prise en compte des espèces responsables des écarts supérieurs ou égaux à 2 constitue le meilleur compromis entre fiabilité et applicabilité en réseau. Cette méthodologie a été appliquée aux 480 relevés effectués dans le bassin Artois - Picardie et aux 550 espèces inventoriées. Elle permet de proposer un indice diatomique pratique basé sur l'identification de 45 genres et 91 espèces.Macroinvertebrates constitute the main biological support for an evaluation of the quality of water courses and are, therefore, widely put to use in monitoring networks. However, for major water courses and canalized waterways the use of other methodologies is imperative. Diatoms and diatom indices are well adapted to the study of these environments. Among these, the Specific Polluosensitivity Index (SPI) established by CEMAGREF seems to be one of the better performing diatom indices. Calculation of this index relies on the Zelinka & Marvan formula derived from the saprobic system: SPI=[Epsilon]A[inf]j v[inf]j i[inf]j / [Epsilon] A[inf]j v[inf]j where A[inf]j is the relative abundance of the species j, v j is its indicative value ( 1 [smaller or equal] v[inf]j [smaller or equal] 3) and i[inf]j its pollution sensitivity (1 [smaller or equal] i[inf]j [smaller or equal] 5). The values initially falling in the range between 1 and 5 are transformed into values comprised between 1 and 20, in order to make comparisons between the various existing indices easier. Five categories of water quality can be distinguished according to the value of the index: SPI [Bigger or equal] 16: zero pollution or low eutrophication; 13.5 [smaller or equal] SPI < 16: moderate eutrophication; 11 [smaller or equal] SPI < 13.5: moderate pollution or heavy eutrophication; 7 [smaller or equal] SPI < 11: high pollution; SPI < 7 : very heavy pollution. However, the SPI index is rarely used because of two main obstacles: it requires data at a specific or even infraspecific level, and it is based on constantly changing systematics. Progress towards increased accessibility and, therefore, larger application was made with the elaboration of the Generic Diatomic Index (IDG) based on the same principle as the SPI. However, this GDI does not yield reliable results, in so far as certain genera, such as Navicula and Nitzschia, contain species with a widely differing ecologies. In order to provide a methodology that can be used as a matter of routine, a protocol for the elaboration of a Practical Diatomic Index (PDI) was established and tested on 86 inventories from the water basin of the river Aa (North of France). These were first classified into four categories according to the variations observed between SPI and GDI: category 1: |SPI-GDI| [bigger or equal] 3 ; category 2: 2 [smaller or equal] |SPI-GDI|; category 3: 1 [smaller or equal] |SPI-DGI| < 2 ; category 4: |SPI-DGI| < 1. For each of the first three categories, the species responsible for the variations were identified, taking into consideration those with a relative abundance of more than 5%, the pollution sensitivity of which showed, compared to the corresponding genus, a variation higher than or equal to 0.4. Thus, three indices corresponding respectively to category 1 (PDI1), 2 (PDI2), and 3 (PDI3) were proposed and tested against the SPI taken as reference index. The results of this comparative study can be summarized as follows:- GDI=0.57 SPI + 5.47 r=0.801 (242 species), - PDI1=0.86 SPI + 1.12 r=0.972 ( 27 species), - PDI2=0.95 SPI + 0.55 r=0.991 ( 39 species), - PDI3=0.96 SPI + 0.45 r=0.994 ( 42 species). To test the implications of replacing the presently used SPI by this practical index, a comparative study of the classification of inventories in four categories of hydrobiological quality was also carried out. This study shows that the mean, at - 1.76 ± 2.25 for the GDI, is reduced to 0.14 ± 0.94 for PDI1, to - 0.07 ± 0.51 for PDI2, and to - 0.07 ± 0.45 for PDI3. Given the variability of the index at one and the same site and in one sampling, PDI2 considered to be the best compromise between reliability and network applicability. The methodology corresponding to PDI2 was applied to the 480 samplings carried out in the Artois-Picardie basin and a new Practical Diatom Index is thus proposed for the monitoring of the 200 sites making up the monitoring network of the Artois-Picardie water basin. This PDI, built on a base of more than 550 species and varieties, rests on the joint determination of 45 genera and 91 species of which the pollution sensitivity coefficients and the indicative values are given

CD32+CD4+memory T cells are enriched for total HIV-1 DNA in tissues from humanized mice

CD32 has raised conflicting results as a putative marker of the HIV-1 reservoir. We measured CD32 expression in tissues from viremic and virally suppressed humanized mice treated relatively early or late after HIV-1 infection with combined antiretroviral therapy. CD32 was expressed in a small fraction of the memory CD4(+) T-cell subsets from different tissues in viremic and aviremic mice, regardless of treatment initiation time. CD32(+) memory CD4(+) T cells were enriched in cell associated (CA) HIV-1 DNA but not in CA HIV-1 RNA as compared to the CD32(-) CD4(+) fraction. Using multidimensional reduction analysis, several memory CD4(+)CD32(+) T-cell clusters were identified expressing HLA-DR, TIGIT, or PD-1. Importantly, although tissue-resident CD32(+)CD4(+) memory cells were enriched with translation-competent reservoirs, most of it was detected in memory CD32-CD4(+) T cells. Our findings support that CD32 labels highly activated/exhausted memory CD4(+) T-cell subsets that contain only a small proportion of the translation-competent reservoir

Natural Selection and Adaptive Evolution of Leptin in the Ochotona Family Driven by the Cold Environmental Stress

BACKGROUND: Environmental stress can accelerate the evolutionary rate of specific stress-response proteins and create new functions specialized for different environments, enhancing an organism's fitness to stressful environments. Pikas (order Lagomorpha), endemic, non-hibernating mammals in the modern Holarctic Region, live in cold regions at either high altitudes or high latitudes and have a maximum distribution of species diversification confined to the Qinghai-Tibet Plateau. Variations in energy metabolism are remarkable for them living in cold environments. Leptin, an adipocyte-derived hormone, plays important roles in energy homeostasis. METHODOLOGY/PRINCIPAL FINDINGS: To examine the extent of leptin variations within the Ochotona family, we cloned the entire coding sequence of pika leptin from 6 species in two regions (Qinghai-Tibet Plateau and Inner Mongolia steppe in China) and the leptin sequences of plateau pikas (O. curzonia) from different altitudes on Qinghai-Tibet Plateau. We carried out both DNA and amino acid sequence analyses in molecular evolution and compared modeled spatial structures. Our results show that positive selection (PS) acts on pika leptin, while nine PS sites located within the functionally significant segment 85-119 of leptin and one unique motif appeared only in pika lineages-the ATP synthase alpha and beta subunit signature site. To reveal the environmental factors affecting sequence evolution of pika leptin, relative rate test was performed in pikas from different altitudes. Stepwise multiple regression shows that temperature is significantly and negatively correlated with the rates of non-synonymous substitution (Ka) and amino acid substitution (Aa), whereas altitude does not significantly affect synonymous substitution (Ks), Ka and Aa. CONCLUSIONS/SIGNIFICANCE: Our findings support the viewpoint that adaptive evolution may occur in pika leptin, which may play important roles in pikas' ecological adaptation to extreme environmental stress. We speculate that cold, and probably not hypoxia, may be the primary environmental factor for driving adaptive evolution of pika leptin

Gomphonema rhombicum M. SCHMIDT (Bacillariophyta) : Typification et description en microscopie optique

Le matériel original de Gomphonema rhombicum M. SCHMIDT, 1904 a pu être identifié et examiné en microscopie optique. L'observation de quelque 210 individus a donné lieu à une diagnose et une illustration photographique de l'espèce. Un lectotype est proposé parmi les isotypes répartis dans diverses collections

Magnetostriction and anisotropy of CoxFe3xO4 (x≤0.1) single crystals

Using the strain gauge technique, the magnetostriction constants ¿[100] and ¿[111] have been measured on single crystals of CoxFe3-xO4 with compositions 0.0005=x=0.1 in the temperature range between 100 and 300 K and using magnetic fields up to 23 kOe. The presence of Co2+-ions gives rise to a very large negative value of ¿[100] and a fairly large positive value of ¿[111]. A linear relationship is found between the magnetostriction constants and the cobalt concentration. Some conclusions about the anisotropic beheviour of the samples can be made, based on the magnetostriction measurements. The change of the direction of easy magnetization from [111] to [100] in the temperature range just above the Verwey transition, is illustrated and discussed. It turned out to be possible to determine an effective anisotropy constant K'1 through a curve fitting procedure. It is found that 1n K'1 varies linearly with T