99 research outputs found
Cloning and sequence analysis of cDNAs encoding the cytosolic precursors of subunits GapA and GapB of chloroplast glyceraldehyde-3-phosphate dehydrogenase from pea and spinach
Chloroplast glyceraldehyde-3-phosphate dehydrogenase (GAPDH) is composed of two different subunits, GapA and GapB. cDNA clones containing the entire coding sequences of the cytosolic precursors for GapA from pea and for GapB from pea and spinach have been identified, sequenced and the derived amino acid sequences have been compared to the corresponding sequences from tobacco, maize and mustard. These comparisons show that GapB differs from GapA in about 20% of its amino acid residues and by the presence of a flexible and negatively charged C-terminal extension, possibly responsible for the observed association of the enzyme with chloroplast envelopes in vitro. This C-terminal extension (29 or 30 residues) may be susceptible to proteolytic cleavage thereby leading to a conversion of chloroplast GAPDH isoenzyme I into isoenzyme II. Evolutionary rate comparisons at the amino acid sequence level show that chloroplast GapA and GapB evolve roughly two-fold slower than their cytosolic counterpart GapC. GapA and GapB transit peptides evolve about 10 times faster than the corresponding mature subunits. They are relatively long (68 and 83 residues for pea GapA and spinach GapB respectively) and share a similar amino acid framework with other chloroplast transit peptides
Managing Dynamic User Communities in a Grid of Autonomous Resources
One of the fundamental concepts in Grid computing is the creation of Virtual
Organizations (VO's): a set of resource consumers and providers that join
forces to solve a common problem. Typical examples of Virtual Organizations
include collaborations formed around the Large Hadron Collider (LHC)
experiments. To date, Grid computing has been applied on a relatively small
scale, linking dozens of users to a dozen resources, and management of these
VO's was a largely manual operation. With the advance of large collaboration,
linking more than 10000 users with a 1000 sites in 150 counties, a
comprehensive, automated management system is required. It should be simple
enough not to deter users, while at the same time ensuring local site autonomy.
The VO Management Service (VOMS), developed by the EU DataGrid and DataTAG
projects[1, 2], is a secured system for managing authorization for users and
resources in virtual organizations. It extends the existing Grid Security
Infrastructure[3] architecture with embedded VO affiliation assertions that can
be independently verified by all VO members and resource providers. Within the
EU DataGrid project, Grid services for job submission, file- and database
access are being equipped with fine- grained authorization systems that take VO
membership into account. These also give resource owners the ability to ensure
site security and enforce local access policies. This paper will describe the
EU DataGrid security architecture, the VO membership service and the local site
enforcement mechanisms Local Centre Authorization Service (LCAS), Local
Credential Mapping Service(LCMAPS) and the Java Trust and Authorization
Manager.Comment: Talk from the 2003 Computing in High Energy and Nuclear Physics
(CHEP03), La Jolla, Ca, USA, March 2003, 7 pages, LaTeX, 5 eps figures. PSN
TUBT00
Mitochondrial glycolysis in a major lineage of eukaryotes
This is the author accepted manuscript. The final version is freely available from OUP via the DOI in this recordThe establishment of the mitochondrion is seen as a transformational step in the origin of eukaryotes. With the mitochondrion came bioenergetic freedom to explore novel evolutionary space leading to the eukaryotic radiation known today. The tight integration of the bacterial endosymbiont with its archaeal host was accompanied by a massive endosymbiotic gene transfer resulting in a small mitochondrial genome which is just a ghost of the original incoming bacterial genome. This endosymbiotic gene transfer resulted in the loss of many genes, both from the bacterial symbiont as well the archaeal host. Loss of genes encoding redundant functions resulted in a replacement of the bulk of the host's metabolism for those originating from the endosymbiont. Glycolysis is one such metabolic pathway in which the original archaeal enzymes have been replaced by the bacterial enzymes from the endosymbiont. Glycolysis is a major catabolic pathway that provides cellular energy from the breakdown of glucose. The glycolytic pathway of eukaryotes appears to be bacterial in origin, and in well-studied model eukaryotes it takes place in the cytosol. In contrast, here we demonstrate that the latter stages of glycolysis take place in the mitochondria of stramenopiles, a diverse and ecologically important lineage of eukaryotes. Although our work is based on a limited sample of stramenopiles, it leaves open the possibility that the mitochondrial targeting of glycolytic enzymes in stramenopiles might represent the ancestral state for eukaryotes.TAW is supported by a Royal Society University Research Fellowship and
NERC grant NE/P00251X/1. Work in the lab of MvdG was supported by Wellcome Trust grant
078566/A/05/Z. PGK wishes to acknowledge support by the German Research Foundation (DFG, grant
KR 1661/6-1) and the Gordon and Betty Moore Foundation GBMF 4966 (grant DiaEdit)
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